Wall clock time and date at job start Wed Apr 1 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00140 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99999 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99941 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99749 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00247 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47250 * 89.99780 * 9 7 5 11 11 H 1.48505 * 109.46924 * 209.99795 * 9 7 5 12 12 H 1.48497 * 109.46881 * 329.99790 * 9 7 5 13 13 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 14 14 C 1.34777 * 119.99984 * 294.93412 * 13 2 1 15 15 O 1.21284 * 120.00242 * 5.19331 * 14 13 2 16 16 C 1.50698 * 120.00165 * 185.20093 * 14 13 2 17 17 C 1.50699 * 109.47574 * 179.97438 * 16 14 13 18 18 C 1.38253 * 120.03100 * 89.99563 * 17 16 14 19 19 C 1.38102 * 119.93578 * 180.02562 * 18 17 16 20 20 C 1.38502 * 120.21121 * 0.02562 * 19 18 17 21 21 C 1.38216 * 119.85346 * 359.97438 * 20 19 18 22 22 C 1.38097 * 120.03373 * 269.72833 * 17 16 14 23 23 C 1.51366 * 109.76108 * 180.02562 * 21 20 19 24 24 C 1.54349 * 105.16961 * 342.81404 * 23 21 20 25 25 C 1.51369 * 130.38887 * 180.02562 * 20 19 18 26 26 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 27 27 C 1.52997 * 117.51873 * 225.38768 * 26 2 1 28 28 C 1.52999 * 117.49975 * 294.01828 * 26 2 1 29 29 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 31 31 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 32 32 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 33 33 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 34 34 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 35 35 H 0.97004 * 120.00327 * 180.02562 * 8 7 5 36 36 H 0.96992 * 120.00195 * 114.93422 * 13 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 16 14 13 38 38 H 1.09000 * 109.47145 * 59.99592 * 16 14 13 39 39 H 1.08002 * 120.03287 * 0.02738 * 18 17 16 40 40 H 1.07993 * 119.89512 * 179.97438 * 19 18 17 41 41 H 1.08006 * 119.89354 * 359.97438 * 22 17 16 42 42 H 1.08994 * 110.30421 * 223.88853 * 23 21 20 43 43 H 1.08998 * 110.38503 * 101.77675 * 23 21 20 44 44 H 1.09002 * 110.82304 * 268.11684 * 24 23 21 45 45 H 1.09002 * 110.99128 * 144.64547 * 24 23 21 46 46 H 1.09005 * 110.30334 * 316.08355 * 25 20 19 47 47 H 1.09003 * 110.30436 * 78.23779 * 25 20 19 48 48 H 1.09000 * 115.55486 * 79.68439 * 26 2 1 49 49 H 1.09002 * 117.50066 * 214.96678 * 27 26 2 50 50 H 1.09000 * 117.50060 * 359.97438 * 27 26 2 51 51 H 1.09003 * 117.49681 * 359.96892 * 28 26 2 52 52 H 1.08997 * 117.50115 * 144.99672 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1895 2.6286 -0.0013 6 1 3.6495 3.5639 -0.0017 7 6 5.5776 2.6286 -0.0013 8 7 6.2357 3.7685 -0.0024 9 14 6.5117 1.0109 -0.0012 10 1 6.7592 0.5821 -1.4012 11 1 7.8093 1.1886 0.6987 12 1 5.7092 -0.0240 0.6990 13 7 2.0183 -0.6905 1.1962 14 6 1.7790 -0.1735 2.4176 15 8 1.0802 0.8110 2.5332 16 6 2.3798 -0.8186 3.6398 17 6 1.9623 -0.0529 4.8688 18 6 0.8041 -0.3993 5.5396 19 6 0.4231 0.3042 6.6653 20 6 1.1974 1.3566 7.1247 21 6 2.3553 1.7030 6.4541 22 6 2.7391 0.9920 5.3292 23 6 3.0176 2.8740 7.1477 24 6 1.9220 3.4820 8.0489 25 6 1.0026 2.2711 8.3152 26 6 2.0400 -0.7212 -1.2491 27 6 3.1741 -1.7321 -1.0682 28 6 1.7547 -2.2198 -1.3656 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6765 1.9564 -0.8901 33 1 1.6765 1.9565 0.8899 34 1 3.9899 0.6026 -0.0006 35 1 7.2057 3.7686 -0.0028 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 0.1980 -1.2192 5.1837 40 1 -0.4819 0.0333 7.1886 41 1 3.6462 1.2590 4.8073 42 1 3.3539 3.6069 6.4144 43 1 3.8576 2.5317 7.7521 44 1 1.3823 4.2706 7.5245 45 1 2.3464 3.8582 8.9798 46 1 -0.0371 2.5924 8.3792 47 1 1.3001 1.7649 9.2336 48 1 2.0307 -0.1343 -2.1676 49 1 3.9109 -1.8103 -1.8677 50 1 3.5574 -1.8833 -0.0591 51 1 1.2041 -2.6921 -0.5520 52 1 1.5578 -2.6189 -2.3606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715129125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:23 Heat of formation + Delta-G solvation = 27.653659 kcal Electronic energy + Delta-G solvation = -30842.603516 eV Core-core repulsion = 27000.837851 eV Total energy + Delta-G solvation = -3841.765665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46349 -39.85072 -37.83706 -35.86726 -34.63217 -33.37203 -32.21937 -31.41116 -30.60520 -29.95466 -27.77015 -26.28667 -25.89730 -23.33677 -22.54806 -22.31578 -21.73206 -21.16705 -20.78571 -19.79599 -18.97931 -17.55078 -17.33154 -16.14046 -15.85356 -15.52379 -15.19283 -15.09318 -14.73405 -14.50891 -14.41672 -14.06915 -13.66528 -13.19725 -13.11871 -12.95794 -12.86706 -12.78113 -12.49653 -12.41102 -12.31323 -12.18121 -11.68974 -11.63323 -11.54538 -11.44360 -11.21686 -11.15481 -11.05412 -10.89216 -10.85629 -10.72700 -10.62584 -10.24682 -10.04590 -10.00627 -9.52886 -9.36070 -8.78601 -8.63775 -8.58006 -8.27336 -7.09779 -5.69874 -3.02491 1.42131 1.55009 3.00465 3.34279 3.37543 3.40024 3.44354 3.85927 3.92461 4.40106 4.57047 4.62495 4.66181 4.77886 4.94336 4.95189 4.96313 5.02464 5.06067 5.11007 5.23571 5.30508 5.42951 5.49804 5.52042 5.57251 5.61172 5.62363 5.63326 5.67009 5.69856 5.77437 5.83435 5.84764 5.91620 6.01129 6.06256 6.09609 6.11686 6.11709 6.19178 6.28732 6.30102 6.49919 6.51532 6.54201 6.71655 6.76795 6.87046 7.08256 7.13028 7.82438 8.09582 8.49392 8.60856 9.30645 10.02621 10.24912 11.49338 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.003938 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.189014 B = 7108.918353 C = 8915.257112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.197 3.803 3 C 0.146 3.854 4 N -0.749 5.749 5 C -0.231 4.231 6 H 0.088 0.912 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.280 1.280 13 N -0.724 5.724 14 C 0.523 3.477 15 O -0.518 6.518 16 C -0.104 4.104 17 C -0.058 4.058 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.086 4.086 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.080 4.080 26 C -0.139 4.139 27 C -0.184 4.184 28 C -0.181 4.181 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.360 0.640 35 H 0.257 0.743 36 H 0.393 0.607 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -13.107 11.168 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.112 3.888 3 C 0.018 3.982 4 N -0.394 5.394 5 C -0.361 4.361 6 H 0.106 0.894 7 C -0.194 4.194 8 N -0.586 5.586 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.206 1.206 13 N -0.380 5.380 14 C 0.309 3.691 15 O -0.393 6.393 16 C -0.144 4.144 17 C -0.059 4.059 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.158 4.158 25 C -0.117 4.117 26 C -0.158 4.158 27 C -0.221 4.221 28 C -0.218 4.218 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.067 0.933 36 H 0.229 0.771 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.137 0.863 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.854 -12.125 11.250 20.349 hybrid contribution 1.253 -1.561 -0.300 2.024 sum -10.602 -13.686 10.950 20.484 Atomic orbital electron populations 1.22072 0.94007 1.01626 1.03369 1.20108 0.93555 0.93154 0.82019 1.21091 0.85215 0.91620 1.00232 1.42569 1.00719 1.05109 1.91046 1.19091 0.89451 0.85987 1.41602 0.89394 1.24621 0.96040 0.95979 1.02759 1.69700 1.06774 1.23693 1.58462 0.86585 0.79691 0.84821 0.77670 1.21212 1.21943 1.20639 1.46238 1.58644 1.27430 1.05649 1.20235 0.80675 0.84320 0.83916 1.90668 1.37222 1.25270 1.86096 1.20687 1.02824 0.99707 0.91222 1.19071 0.95350 0.96461 0.94991 1.20766 0.96016 1.00175 0.95547 1.20458 0.99426 0.95803 0.97047 1.20544 0.95841 0.96705 0.97296 1.20491 0.96105 0.97250 0.95445 1.20538 1.00150 0.94520 0.95225 1.21053 0.97863 0.95164 0.98086 1.22288 0.96555 0.97290 0.99646 1.21018 1.00360 0.94580 0.95704 1.22503 1.02504 0.91128 0.99623 1.22983 0.92020 1.04331 1.02749 1.22992 0.98850 0.97197 1.02779 0.92976 0.90515 0.91845 0.95244 0.92499 0.80682 0.93269 0.77066 0.88532 0.88047 0.86370 0.86626 0.86047 0.90332 0.90400 0.90900 0.90737 0.91002 0.90590 0.86303 0.88388 0.88981 0.88957 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.37 37.15 0.31 -1.83 16 2 C 0.20 3.11 0.52 -131.82 -0.07 3.04 16 3 C 0.15 3.05 4.89 -4.04 -0.02 3.03 16 4 N -0.75 -18.08 5.03 -59.90 -0.30 -18.38 16 5 C -0.23 -6.74 10.47 -15.06 -0.16 -6.89 16 6 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 7 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 8 N -0.94 -30.02 13.97 55.49 0.78 -29.24 16 9 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 13 N -0.72 -10.65 4.49 -47.61 -0.21 -10.86 16 14 C 0.52 8.48 7.23 -10.99 -0.08 8.40 16 15 O -0.52 -10.27 12.28 5.55 0.07 -10.20 16 16 C -0.10 -1.37 5.83 -29.04 -0.17 -1.54 16 17 C -0.06 -0.85 4.37 -104.67 -0.46 -1.30 16 18 C -0.11 -1.40 9.70 -39.63 -0.38 -1.78 16 19 C -0.11 -1.37 10.04 -39.53 -0.40 -1.77 16 20 C -0.10 -1.36 6.14 -104.20 -0.64 -2.00 16 21 C -0.09 -1.34 6.14 -104.21 -0.64 -1.98 16 22 C -0.09 -1.36 9.69 -39.54 -0.38 -1.74 16 23 C -0.08 -1.03 6.77 -26.85 -0.18 -1.21 16 24 C -0.12 -1.21 7.08 -25.31 -0.18 -1.39 16 25 C -0.08 -0.81 6.77 -26.85 -0.18 -0.99 16 26 C -0.14 -1.95 4.48 -90.63 -0.41 -2.35 16 27 C -0.18 -2.38 8.98 -26.73 -0.24 -2.62 16 28 C -0.18 -1.95 9.53 -26.73 -0.25 -2.21 16 29 H 0.05 0.63 7.72 -51.93 -0.40 0.23 16 30 H 0.08 1.24 6.37 -51.93 -0.33 0.90 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.34 5.99 -51.93 -0.31 1.03 16 34 H 0.36 8.29 4.29 -40.82 -0.18 8.12 16 35 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 36 H 0.39 4.85 5.64 -40.82 -0.23 4.62 16 37 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.10 1.29 8.08 -51.93 -0.42 0.87 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 49 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.09 1.18 5.96 -51.93 -0.31 0.87 16 51 H 0.09 0.91 7.99 -51.93 -0.42 0.49 16 52 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -34.86 406.98 -11.40 -46.26 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -8.52 Total: 15.97 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.62 Total: -17.22 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.26 Total: -58.49 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.86 -11.40 -46.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715129125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.918 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds