Wall clock time and date at job start Wed Apr 1 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47160 * 2 1 4 4 N 1.46510 * 109.47143 * 299.99829 * 3 2 1 5 5 C 1.36941 * 119.99723 * 179.97438 * 4 3 2 6 6 H 1.07996 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99249 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00655 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99389 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47380 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47076 * 120.00316 * 9 7 5 12 12 H 1.48503 * 109.47391 * 240.00059 * 9 7 5 13 13 N 1.46504 * 109.46969 * 239.99857 * 2 1 3 14 14 C 1.34773 * 119.99932 * 174.05911 * 13 2 1 15 15 O 1.21281 * 120.00012 * 355.56816 * 14 13 2 16 16 C 1.50706 * 119.99779 * 175.57385 * 14 13 2 17 17 C 1.50699 * 109.46956 * 179.97438 * 16 14 13 18 18 C 1.38253 * 120.03060 * 269.97836 * 17 16 14 19 19 C 1.38109 * 119.93292 * 180.02562 * 18 17 16 20 20 C 1.38499 * 120.21565 * 0.02562 * 19 18 17 21 21 C 1.38216 * 119.84849 * 359.68150 * 20 19 18 22 22 C 1.38100 * 120.03217 * 89.99646 * 17 16 14 23 23 C 1.51376 * 109.75819 * 179.81556 * 21 20 19 24 24 C 1.54351 * 105.23744 * 343.22672 * 23 21 20 25 25 C 1.51372 * 130.39285 * 179.97438 * 20 19 18 26 26 C 1.53004 * 109.47039 * 120.00197 * 2 1 3 27 27 C 1.53002 * 117.49570 * 122.15745 * 26 2 1 28 28 C 1.52997 * 117.49958 * 53.49771 * 26 2 1 29 29 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46990 * 299.99809 * 1 2 3 31 31 H 1.09003 * 109.47083 * 59.99749 * 1 2 3 32 32 H 1.08999 * 109.47743 * 60.00080 * 3 2 1 33 33 H 1.09007 * 109.47107 * 180.02562 * 3 2 1 34 34 H 0.97001 * 119.99397 * 0.02562 * 4 3 2 35 35 H 0.96994 * 120.00615 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99697 * 354.05961 * 13 2 1 37 37 H 1.09000 * 109.47130 * 60.00062 * 16 14 13 38 38 H 1.09001 * 109.47191 * 299.99505 * 16 14 13 39 39 H 1.07996 * 120.03564 * 0.04295 * 18 17 16 40 40 H 1.08000 * 119.89399 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.89701 * 359.97438 * 22 17 16 42 42 H 1.08995 * 110.46287 * 224.18078 * 23 21 20 43 43 H 1.08993 * 110.15572 * 102.11425 * 23 21 20 44 44 H 1.09000 * 110.82154 * 267.88468 * 24 23 21 45 45 H 1.09002 * 110.98622 * 144.41677 * 24 23 21 46 46 H 1.09002 * 110.30058 * 316.10331 * 25 20 19 47 47 H 1.08994 * 110.30290 * 78.24806 * 25 20 19 48 48 H 1.08993 * 115.54693 * 267.82234 * 26 2 1 49 49 H 1.08998 * 117.50184 * 359.97438 * 27 26 2 50 50 H 1.09000 * 117.49604 * 145.02378 * 27 26 2 51 51 H 1.09003 * 117.49785 * 214.97771 * 28 26 2 52 52 H 1.09002 * 117.50049 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1331 -1.1963 5 6 1.8821 3.4443 -1.4127 6 1 2.5030 3.9691 -0.7017 7 6 1.4189 4.0987 -2.5458 8 7 0.6619 3.4593 -3.4120 9 14 1.8703 5.8871 -2.8414 10 1 2.7250 6.3724 -1.7283 11 1 2.6122 6.0052 -4.1224 12 1 0.6328 6.7053 -2.9090 13 7 2.0183 -0.6907 -1.1962 14 6 3.3375 -0.7102 -1.4717 15 8 4.1118 -0.0893 -0.7748 16 6 3.8503 -1.5037 -2.6459 17 6 5.3478 -1.3596 -2.7339 18 6 5.9017 -0.3360 -3.4802 19 6 7.2744 -0.2062 -3.5599 20 6 8.0987 -1.0987 -2.8949 21 6 7.5448 -2.1183 -2.1439 22 6 6.1680 -2.2501 -2.0696 23 6 8.6449 -2.9539 -1.5251 24 6 9.9199 -2.5979 -2.3189 25 6 9.6089 -1.1730 -2.8237 26 6 2.0400 -0.7213 1.2493 27 6 2.9565 -1.9290 1.0430 28 6 1.5144 -2.1336 1.5136 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 0.9937 1.6617 -1.8345 35 1 0.3380 3.9167 -4.2036 36 1 1.3922 -1.1338 -1.7899 37 1 3.3952 -1.1303 -3.5633 38 1 3.5932 -2.5547 -2.5143 39 1 5.2617 0.3615 -4.0000 40 1 7.7064 0.5934 -4.1433 41 1 5.7346 -3.0493 -1.4867 42 1 8.4201 -4.0155 -1.6268 43 1 8.7686 -2.6930 -0.4741 44 1 10.0598 -3.2832 -3.1549 45 1 10.7960 -2.5968 -1.6703 46 1 10.0421 -1.0189 -3.8119 47 1 9.9914 -0.4314 -2.1224 48 1 2.2319 -0.0857 2.1136 49 1 3.1958 -2.2098 0.0173 50 1 3.7511 -2.0881 1.7720 51 1 1.3608 -2.4273 2.5520 52 1 0.8049 -2.5488 0.7978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715129129.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:25 Heat of formation + Delta-G solvation = 8.438205 kcal Electronic energy + Delta-G solvation = -30783.411816 eV Core-core repulsion = 26940.812906 eV Total energy + Delta-G solvation = -3842.598909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67560 -40.86113 -38.55504 -36.75353 -36.54542 -34.85495 -33.44553 -32.74263 -31.59106 -30.86208 -28.69530 -27.66396 -27.15661 -25.51411 -23.58407 -23.07884 -22.96217 -22.25311 -21.65076 -20.75082 -20.27776 -19.26397 -18.00301 -17.31596 -17.11375 -16.86248 -16.61468 -16.31241 -16.01460 -15.64264 -15.48791 -15.28024 -14.96989 -14.78985 -14.58656 -14.13327 -13.93133 -13.69808 -13.62504 -13.51364 -13.31437 -13.28395 -13.01008 -12.88237 -12.76776 -12.52287 -12.35625 -12.26093 -12.13519 -12.10315 -12.00938 -11.96682 -11.77570 -11.69651 -11.59358 -11.18744 -11.07857 -10.91206 -10.34485 -9.83955 -9.65181 -9.26895 -8.89353 -7.95724 -5.20341 0.40056 0.49931 1.41985 1.42816 1.52799 1.89777 2.32846 2.53828 2.86617 3.00151 3.37642 3.47359 3.68407 3.68849 3.80632 3.96842 4.02119 4.08415 4.15407 4.19115 4.19972 4.21327 4.34773 4.39359 4.41523 4.50799 4.59371 4.60404 4.64578 4.74146 4.81508 4.82683 4.90888 4.92352 4.94619 4.96529 4.98961 5.09400 5.10630 5.23761 5.24103 5.30901 5.32777 5.35731 5.36942 5.38807 5.46795 5.52604 5.69194 5.72010 5.82401 6.13152 6.27935 6.79841 7.34934 7.54693 8.10977 8.39954 9.27494 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.003791 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.308932 B = 7384.560099 C = 9735.528366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.211 3.789 3 C 0.139 3.861 4 N -0.727 5.727 5 C -0.239 4.239 6 H 0.058 0.942 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.288 1.288 13 N -0.711 5.711 14 C 0.520 3.480 15 O -0.556 6.556 16 C -0.099 4.099 17 C -0.068 4.068 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.101 4.101 23 C -0.080 4.080 24 C -0.112 4.112 25 C -0.083 4.083 26 C -0.166 4.166 27 C -0.168 4.168 28 C -0.148 4.148 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.031 0.969 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.408 0.592 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.573 -20.621 3.750 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 C 0.012 3.988 4 N -0.370 5.370 5 C -0.371 4.371 6 H 0.076 0.924 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.794 3.206 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.214 1.214 13 N -0.364 5.364 14 C 0.308 3.692 15 O -0.434 6.434 16 C -0.139 4.139 17 C -0.069 4.069 18 C -0.145 4.145 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.149 4.149 25 C -0.120 4.120 26 C -0.186 4.186 27 C -0.205 4.205 28 C -0.185 4.185 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.048 0.952 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.244 0.756 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.107 0.893 50 H 0.102 0.898 51 H 0.125 0.875 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.211 -20.025 4.317 23.352 hybrid contribution -0.534 1.624 -0.883 1.924 sum 10.677 -18.400 3.434 21.549 Atomic orbital electron populations 1.21917 0.91939 1.03197 1.02624 1.19785 0.94343 0.89599 0.83851 1.21220 0.97726 0.91169 0.88671 1.42282 1.60914 1.09618 1.24195 1.19531 1.24255 0.89203 1.04121 0.92393 1.25353 1.01348 1.01916 0.97449 1.69768 1.40885 1.37205 1.13492 0.85203 0.77225 0.80890 0.77266 1.20088 1.22013 1.21440 1.45929 1.07421 1.56257 1.26792 1.20628 0.82323 0.80759 0.85537 1.90667 1.57040 1.43797 1.51889 1.20736 0.92480 1.02956 0.97699 1.19275 0.94388 0.95606 0.97595 1.21021 0.95374 0.97815 1.00318 1.20745 0.92948 0.99508 1.00790 1.20946 0.97291 0.95736 0.97678 1.20945 0.94150 0.97754 0.98229 1.20595 0.92409 0.99751 0.99170 1.21101 0.91643 0.99384 0.99514 1.22308 0.97365 0.95032 1.00244 1.21125 0.89395 0.98900 1.02534 1.22418 1.06455 0.91363 0.98331 1.22909 0.93898 1.01674 1.02018 1.23058 0.96148 0.96291 1.02965 0.89222 0.91236 0.93370 0.97431 0.95160 0.78913 0.94037 0.75624 0.87734 0.84895 0.87497 0.85828 0.84958 0.89282 0.90140 0.90079 0.88685 0.89866 0.90234 0.88705 0.89252 0.89778 0.87516 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.18 71.98 0.59 -3.41 16 2 C 0.21 6.87 0.55 3.60 0.00 6.88 16 3 C 0.14 6.30 4.81 86.37 0.42 6.71 16 4 N -0.73 -38.49 5.18 -343.44 -1.78 -40.26 16 5 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 6 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.96 -59.11 13.06 21.65 0.28 -58.82 16 9 Si 0.96 48.38 29.55 68.60 2.03 50.40 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 N -0.71 -21.20 4.17 -422.92 -1.76 -22.96 16 14 C 0.52 17.30 4.86 87.66 0.43 17.73 16 15 O -0.56 -23.55 12.37 -3.03 -0.04 -23.59 16 16 C -0.10 -2.59 5.83 29.10 0.17 -2.42 16 17 C -0.07 -2.03 4.37 -19.89 -0.09 -2.12 16 18 C -0.13 -4.19 9.70 22.24 0.22 -3.98 16 19 C -0.12 -3.65 10.04 22.30 0.22 -3.43 16 20 C -0.12 -3.05 6.14 -19.59 -0.12 -3.18 16 21 C -0.11 -2.77 6.14 -19.59 -0.12 -2.89 16 22 C -0.10 -2.69 9.70 22.30 0.22 -2.47 16 23 C -0.08 -1.38 6.77 30.52 0.21 -1.17 16 24 C -0.11 -1.57 7.08 31.51 0.22 -1.35 16 25 C -0.08 -1.54 6.77 30.52 0.21 -1.34 16 26 C -0.17 -4.70 4.89 -10.79 -0.05 -4.75 16 27 C -0.17 -4.26 8.62 30.62 0.26 -4.00 16 28 C -0.15 -2.98 9.68 30.62 0.30 -2.68 16 29 H 0.09 1.88 6.91 -2.38 -0.02 1.87 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.64 6.86 -2.39 -0.02 1.63 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.03 1.57 5.63 -2.38 -0.01 1.56 16 34 H 0.38 20.26 6.35 -92.71 -0.59 19.67 16 35 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.41 9.78 8.48 -92.71 -0.79 9.00 16 37 H 0.10 2.67 8.09 -2.39 -0.02 2.65 16 38 H 0.13 2.38 8.09 -2.39 -0.02 2.36 16 39 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.09 2.87 8.06 -2.39 -0.02 2.85 16 49 H 0.09 2.31 5.21 -2.39 -0.01 2.30 16 50 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.11 1.84 7.20 -2.39 -0.02 1.83 16 Total: -1.00 -76.14 407.88 2.66 -73.48 By element: Atomic # 1 Polarization: 47.06 SS G_CDS: -0.45 Total: 46.61 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.38 Total: -24.86 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -3.26 Total: -122.05 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Total: -76.14 2.66 -73.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715129129.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.917 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds