Wall clock time and date at job start Wed Apr 1 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47279 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47140 * 54.99538 * 5 4 3 7 7 N 1.46503 * 109.46694 * 295.00086 * 5 4 3 8 8 C 1.34776 * 119.99921 * 299.99848 * 7 5 4 9 9 N 1.34781 * 120.00072 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00030 * 359.97438 * 8 7 5 11 11 C 1.50698 * 109.47113 * 175.00039 * 5 4 3 12 12 O 1.21280 * 119.99852 * 100.00270 * 11 5 4 13 13 N 1.34774 * 119.99634 * 279.99324 * 11 5 4 14 14 C 1.46503 * 119.99590 * 179.97438 * 13 11 5 15 15 C 1.53004 * 109.46973 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.50975 * 305.10507 * 15 14 13 17 17 C 1.53290 * 109.51200 * 185.00344 * 15 14 13 18 18 N 1.47154 * 108.38798 * 187.77432 * 17 15 14 19 19 C 1.36938 * 120.98650 * 230.51732 * 18 17 15 20 20 H 1.08002 * 119.99667 * 26.24980 * 19 18 17 21 21 C 1.38808 * 119.99845 * 206.25966 * 19 18 17 22 22 N 1.31621 * 120.00268 * 16.90512 * 21 19 18 23 23 Si 1.86801 * 119.99598 * 196.91014 * 21 19 18 24 24 H 1.48503 * 109.47102 * 89.99737 * 23 21 19 25 25 H 1.48505 * 109.47018 * 209.99475 * 23 21 19 26 26 H 1.48500 * 109.47295 * 329.99431 * 23 21 19 27 27 C 1.47154 * 118.03340 * 50.52999 * 18 17 15 28 28 C 1.53291 * 108.41709 * 309.45449 * 27 18 17 29 29 O 1.42959 * 109.51242 * 65.25611 * 15 14 13 30 30 H 1.08997 * 109.47242 * 59.99621 * 1 2 3 31 31 H 1.08994 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46402 * 299.99468 * 1 2 3 33 33 H 1.09005 * 109.46978 * 240.00713 * 2 1 3 34 34 H 1.08997 * 109.47558 * 120.00824 * 2 1 3 35 35 H 1.09001 * 109.46774 * 59.99993 * 3 2 1 36 36 H 1.08997 * 109.47318 * 300.00332 * 3 2 1 37 37 H 1.08993 * 109.46868 * 59.99888 * 4 3 2 38 38 H 1.09007 * 109.46908 * 300.00221 * 4 3 2 39 39 H 0.97000 * 119.99941 * 120.00730 * 7 5 4 40 40 H 0.96998 * 119.99768 * 359.97438 * 9 8 7 41 41 H 0.97006 * 119.99769 * 180.02562 * 9 8 7 42 42 H 0.96999 * 120.00443 * 0.02562 * 13 11 5 43 43 H 1.09007 * 109.47244 * 60.00572 * 14 13 11 44 44 H 1.09000 * 109.47342 * 300.00515 * 14 13 11 45 45 H 1.09002 * 109.68722 * 68.04917 * 17 15 14 46 46 H 1.09005 * 109.68685 * 307.49699 * 17 15 14 47 47 H 0.97003 * 119.99665 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.67951 * 69.19461 * 27 18 17 49 49 H 1.08992 * 109.68215 * 189.70500 * 27 18 17 50 50 H 1.09003 * 109.51579 * 172.24752 * 28 27 18 51 51 H 1.09007 * 109.51001 * 292.39145 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 7 3.6919 3.5407 -1.2513 8 6 4.1159 3.0459 -2.4311 9 7 3.7593 3.6493 -3.5822 10 8 4.8210 2.0556 -2.4569 11 6 5.5820 2.8867 0.1232 12 8 6.2711 3.0403 -0.8629 13 7 6.1593 2.7177 1.3292 14 6 7.6195 2.7189 1.4489 15 6 8.0113 2.5091 2.9130 16 1 7.5228 3.2617 3.5319 17 6 9.5321 2.6345 3.0590 18 7 9.9005 2.2458 4.4296 19 6 10.6985 3.0491 5.1998 20 1 10.7264 4.1137 5.0206 21 6 11.4715 2.4948 6.2107 22 7 11.7044 1.1995 6.2262 23 14 12.1813 3.5875 7.5493 24 1 11.2182 3.6793 8.6759 25 1 13.4588 3.0074 8.0362 26 1 12.4314 4.9443 7.0000 27 6 9.3862 0.9683 4.9480 28 6 7.8724 0.9235 4.7107 29 8 7.6040 1.2052 3.3342 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9338 0.9285 0.8892 39 1 3.1298 4.3309 -1.2307 40 1 3.1971 4.4395 -3.5616 41 1 4.0642 3.2930 -4.4314 42 1 5.6082 2.5946 2.1179 43 1 8.0119 3.6744 1.1007 44 1 8.0343 1.9133 0.8431 45 1 9.8348 3.6656 2.8759 46 1 10.0252 1.9745 2.3452 47 1 12.2443 0.8122 6.9329 48 1 9.8645 0.1404 4.4244 49 1 9.5928 0.8956 6.0157 50 1 7.4937 -0.0675 4.9611 51 1 7.3835 1.6697 5.3370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715299334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:39 Heat of formation + Delta-G solvation = -98.947879 kcal Electronic energy + Delta-G solvation = -30961.491065 eV Core-core repulsion = 26703.386283 eV Total energy + Delta-G solvation = -4258.104783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.65140 -39.02785 -38.25832 -36.40159 -34.83322 -34.34456 -34.20968 -33.61903 -31.60402 -30.90649 -30.36048 -27.84499 -26.86908 -25.14673 -23.21579 -23.00937 -22.10360 -21.55236 -20.96941 -20.12909 -19.44184 -18.72775 -17.67358 -16.96602 -16.66688 -16.07581 -15.96618 -15.70034 -15.07867 -14.96777 -14.65595 -14.63797 -14.31235 -14.24660 -14.12118 -13.80157 -13.49232 -13.32001 -13.16485 -13.03333 -12.82405 -12.69115 -12.31580 -11.91802 -11.53063 -11.49098 -11.33617 -11.12834 -11.12088 -10.86427 -10.82786 -10.71938 -10.39891 -10.26031 -10.21902 -9.98197 -9.85126 -9.66720 -9.65956 -9.08402 -8.94875 -8.80731 -8.54830 -6.76178 -5.84915 -3.28785 2.57850 2.85760 3.19305 3.33542 3.40249 3.41957 3.48387 4.24794 4.31587 4.42429 4.50906 4.66460 4.72097 4.80861 4.95902 5.07571 5.17007 5.18243 5.32455 5.46497 5.48997 5.53140 5.54247 5.61128 5.66246 5.81827 5.82469 5.90409 5.95617 6.03059 6.06537 6.16532 6.19148 6.29544 6.31606 6.37729 6.49636 6.53490 6.63337 6.77343 6.81866 7.10765 7.51746 7.67073 7.70093 7.84583 7.86874 8.32606 8.41037 8.67513 9.10644 9.73303 10.30377 11.23116 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002237 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.850121 B =12513.269601 C =13587.345213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.136 4.136 5 C 0.156 3.844 6 H 0.107 0.893 7 N -0.733 5.733 8 C 0.710 3.290 9 N -0.872 5.872 10 O -0.561 6.561 11 C 0.495 3.505 12 O -0.510 6.510 13 N -0.723 5.723 14 C 0.133 3.867 15 C 0.067 3.933 16 H 0.058 0.942 17 C 0.121 3.879 18 N -0.594 5.594 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.139 3.861 28 C 0.040 3.960 29 O -0.389 6.389 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.397 0.603 40 H 0.392 0.608 41 H 0.413 0.587 42 H 0.400 0.600 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.255 0.745 48 H 0.028 0.972 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.363 4.270 -12.882 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.175 4.175 5 C 0.046 3.954 6 H 0.125 0.875 7 N -0.390 5.390 8 C 0.408 3.592 9 N -0.441 5.441 10 O -0.435 6.435 11 C 0.279 3.721 12 O -0.384 6.384 13 N -0.376 5.376 14 C 0.009 3.991 15 C 0.007 3.993 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.318 5.318 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.013 3.987 28 C -0.038 4.038 29 O -0.308 6.308 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.219 0.781 41 H 0.244 0.756 42 H 0.234 0.766 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.172 3.291 -13.461 27.000 hybrid contribution -0.025 1.249 1.067 1.643 sum -23.197 4.540 -12.395 26.690 Atomic orbital electron populations 1.21764 0.96008 1.01530 1.01554 1.21523 0.95605 0.96891 1.02348 1.21538 0.94585 0.96989 1.01736 1.22024 0.95884 0.94409 1.05163 1.20691 0.92224 0.96058 0.86428 0.87515 1.44676 1.56694 1.33352 1.04246 1.15842 0.79611 0.83229 0.80505 1.42979 1.58920 1.34409 1.07799 1.90985 1.39822 1.26934 1.85759 1.20829 0.90569 0.77420 0.83326 1.90759 1.64329 1.47014 1.36279 1.45925 1.07998 1.74320 1.09325 1.21360 0.79656 1.02278 0.95795 1.22784 0.97810 0.85794 0.92944 0.92453 1.21450 0.91056 0.99327 0.88782 1.44078 1.56902 1.21671 1.09150 1.19210 1.18172 0.89596 1.11441 0.91322 1.25058 0.97519 0.96032 1.01106 1.70040 1.40689 1.10418 1.33523 0.86232 0.78204 0.79880 0.82099 1.21390 1.21674 1.20384 1.21445 0.88121 0.87635 1.01467 1.23329 0.99564 0.99400 0.81500 1.87813 1.82728 1.32577 1.27690 0.92998 0.92859 0.92798 0.92001 0.91800 0.92107 0.92104 0.88621 0.90440 0.76915 0.78133 0.75558 0.76626 0.90432 0.90820 0.91840 0.95223 0.93489 0.95375 0.88795 0.90054 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.11 -0.81 5.10 -26.73 -0.14 -0.95 16 4 C -0.14 -1.33 4.54 -26.73 -0.12 -1.46 16 5 C 0.16 1.49 3.01 -69.08 -0.21 1.28 16 6 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 7 N -0.73 -6.27 4.66 -59.81 -0.28 -6.55 16 8 C 0.71 8.26 7.59 -86.92 -0.66 7.60 16 9 N -0.87 -6.28 8.88 27.64 0.25 -6.03 16 10 O -0.56 -9.49 13.03 -18.20 -0.24 -9.72 16 11 C 0.50 6.96 6.82 -10.99 -0.07 6.88 16 12 O -0.51 -9.50 13.68 -17.94 -0.25 -9.75 16 13 N -0.72 -9.58 5.51 -60.29 -0.33 -9.91 16 14 C 0.13 2.09 5.34 -4.04 -0.02 2.07 16 15 C 0.07 1.17 2.81 -26.58 -0.07 1.09 16 16 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 17 C 0.12 2.56 6.02 -3.53 -0.02 2.54 16 18 N -0.59 -14.91 3.05 -171.83 -0.52 -15.43 16 19 C -0.25 -6.93 9.65 -15.06 -0.15 -7.07 16 20 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 21 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 22 N -0.90 -26.01 11.14 55.49 0.62 -25.40 16 23 Si 0.91 21.41 29.59 -169.99 -5.03 16.38 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.14 3.32 5.44 -3.53 -0.02 3.30 16 28 C 0.04 0.76 6.99 37.31 0.26 1.02 16 29 O -0.39 -7.30 10.34 -35.23 -0.36 -7.66 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.45 7.75 -51.93 -0.40 0.04 16 37 H 0.10 1.28 6.04 -51.93 -0.31 0.97 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 1.92 8.84 -40.82 -0.36 1.56 16 40 H 0.39 1.41 8.84 -40.82 -0.36 1.05 16 41 H 0.41 2.80 8.93 -40.82 -0.36 2.43 16 42 H 0.40 4.42 8.47 -40.82 -0.35 4.07 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 49 H 0.09 2.45 6.14 -51.93 -0.32 2.13 16 50 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 51 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 406.61 15.07 6.13 6.13 Total: -1.00 -36.79 406.61 -9.89 -46.68 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.77 Total: 6.74 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -1.10 Total: 14.53 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.27 Total: -63.33 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.85 Total: -27.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.79 -9.89 -46.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715299334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.272 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds