Wall clock time and date at job start Wed Apr 1 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47279 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47140 * 54.99538 * 5 4 3 7 7 N 1.46503 * 109.46694 * 295.00086 * 5 4 3 8 8 C 1.34776 * 119.99921 * 299.99848 * 7 5 4 9 9 N 1.34781 * 120.00072 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00030 * 359.97438 * 8 7 5 11 11 C 1.50698 * 109.47113 * 175.00039 * 5 4 3 12 12 O 1.21280 * 119.99852 * 100.00270 * 11 5 4 13 13 N 1.34774 * 119.99634 * 279.99324 * 11 5 4 14 14 C 1.46503 * 119.99590 * 179.97438 * 13 11 5 15 15 C 1.53004 * 109.46973 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.50975 * 305.10507 * 15 14 13 17 17 C 1.53290 * 109.51200 * 185.00344 * 15 14 13 18 18 N 1.47154 * 108.38798 * 187.77432 * 17 15 14 19 19 C 1.36938 * 120.98650 * 230.51732 * 18 17 15 20 20 H 1.08002 * 119.99667 * 26.24980 * 19 18 17 21 21 C 1.38808 * 119.99845 * 206.25966 * 19 18 17 22 22 N 1.31621 * 120.00268 * 16.90512 * 21 19 18 23 23 Si 1.86801 * 119.99598 * 196.91014 * 21 19 18 24 24 H 1.48503 * 109.47102 * 89.99737 * 23 21 19 25 25 H 1.48505 * 109.47018 * 209.99475 * 23 21 19 26 26 H 1.48500 * 109.47295 * 329.99431 * 23 21 19 27 27 C 1.47154 * 118.03340 * 50.52999 * 18 17 15 28 28 C 1.53291 * 108.41709 * 309.45449 * 27 18 17 29 29 O 1.42959 * 109.51242 * 65.25611 * 15 14 13 30 30 H 1.08997 * 109.47242 * 59.99621 * 1 2 3 31 31 H 1.08994 * 109.46739 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46402 * 299.99468 * 1 2 3 33 33 H 1.09005 * 109.46978 * 240.00713 * 2 1 3 34 34 H 1.08997 * 109.47558 * 120.00824 * 2 1 3 35 35 H 1.09001 * 109.46774 * 59.99993 * 3 2 1 36 36 H 1.08997 * 109.47318 * 300.00332 * 3 2 1 37 37 H 1.08993 * 109.46868 * 59.99888 * 4 3 2 38 38 H 1.09007 * 109.46908 * 300.00221 * 4 3 2 39 39 H 0.97000 * 119.99941 * 120.00730 * 7 5 4 40 40 H 0.96998 * 119.99768 * 359.97438 * 9 8 7 41 41 H 0.97006 * 119.99769 * 180.02562 * 9 8 7 42 42 H 0.96999 * 120.00443 * 0.02562 * 13 11 5 43 43 H 1.09007 * 109.47244 * 60.00572 * 14 13 11 44 44 H 1.09000 * 109.47342 * 300.00515 * 14 13 11 45 45 H 1.09002 * 109.68722 * 68.04917 * 17 15 14 46 46 H 1.09005 * 109.68685 * 307.49699 * 17 15 14 47 47 H 0.97003 * 119.99665 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.67951 * 69.19461 * 27 18 17 49 49 H 1.08992 * 109.68215 * 189.70500 * 27 18 17 50 50 H 1.09003 * 109.51579 * 172.24752 * 28 27 18 51 51 H 1.09007 * 109.51001 * 292.39145 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 7 3.6919 3.5407 -1.2513 8 6 4.1159 3.0459 -2.4311 9 7 3.7593 3.6493 -3.5822 10 8 4.8210 2.0556 -2.4569 11 6 5.5820 2.8867 0.1232 12 8 6.2711 3.0403 -0.8629 13 7 6.1593 2.7177 1.3292 14 6 7.6195 2.7189 1.4489 15 6 8.0113 2.5091 2.9130 16 1 7.5228 3.2617 3.5319 17 6 9.5321 2.6345 3.0590 18 7 9.9005 2.2458 4.4296 19 6 10.6985 3.0491 5.1998 20 1 10.7264 4.1137 5.0206 21 6 11.4715 2.4948 6.2107 22 7 11.7044 1.1995 6.2262 23 14 12.1813 3.5875 7.5493 24 1 11.2182 3.6793 8.6759 25 1 13.4588 3.0074 8.0362 26 1 12.4314 4.9443 7.0000 27 6 9.3862 0.9683 4.9480 28 6 7.8724 0.9235 4.7107 29 8 7.6040 1.2052 3.3342 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9338 0.9285 0.8892 39 1 3.1298 4.3309 -1.2307 40 1 3.1971 4.4395 -3.5616 41 1 4.0642 3.2930 -4.4314 42 1 5.6082 2.5946 2.1179 43 1 8.0119 3.6744 1.1007 44 1 8.0343 1.9133 0.8431 45 1 9.8348 3.6656 2.8759 46 1 10.0252 1.9745 2.3452 47 1 12.2443 0.8122 6.9329 48 1 9.8645 0.1404 4.4244 49 1 9.5928 0.8956 6.0157 50 1 7.4937 -0.0675 4.9611 51 1 7.3835 1.6697 5.3370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715299334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:38 Heat of formation + Delta-G solvation = -128.692020 kcal Electronic energy + Delta-G solvation = -30962.780868 eV Core-core repulsion = 26703.386283 eV Total energy + Delta-G solvation = -4259.394585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58673 -40.34294 -39.57614 -37.15121 -36.48364 -35.70422 -35.13851 -34.37100 -33.37289 -32.41275 -31.25722 -29.34784 -28.08770 -26.57103 -24.96719 -23.85520 -23.39574 -22.54669 -21.79066 -21.51365 -20.69204 -19.51290 -18.92066 -18.43887 -17.68378 -17.47506 -17.09061 -16.84655 -16.50501 -16.16611 -15.98341 -15.69495 -15.50807 -15.44753 -15.18453 -14.98010 -14.93955 -14.61811 -14.52276 -14.11947 -14.10452 -13.56316 -13.41556 -13.21800 -13.00317 -12.72411 -12.69032 -12.52912 -12.17536 -12.15951 -12.07272 -11.99223 -11.87581 -11.74655 -11.43170 -11.34357 -11.20594 -10.80846 -10.78549 -10.55444 -10.43212 -10.03493 -9.82632 -8.76841 -7.91673 -5.39756 1.47311 1.47703 1.57386 1.68282 1.90296 2.28479 2.46613 2.56008 2.78540 3.23049 3.48439 3.70103 3.75335 3.93289 4.00518 4.04642 4.08791 4.20007 4.24630 4.30691 4.45856 4.48650 4.52792 4.58415 4.62162 4.70703 4.78223 4.86862 4.89912 4.90956 5.03627 5.06001 5.06867 5.23848 5.26445 5.35697 5.42343 5.46749 5.53961 5.54767 5.57264 5.60607 6.01515 6.14627 6.25674 6.33293 6.64747 7.05163 7.24965 7.36997 7.73023 7.89910 8.27098 9.14356 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002237 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.850121 B =12513.269601 C =13587.345213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.130 4.130 5 C 0.161 3.839 6 H 0.156 0.844 7 N -0.718 5.718 8 C 0.699 3.301 9 N -0.855 5.855 10 O -0.619 6.619 11 C 0.489 3.511 12 O -0.560 6.560 13 N -0.712 5.712 14 C 0.145 3.855 15 C 0.083 3.917 16 H 0.076 0.924 17 C 0.115 3.885 18 N -0.612 5.612 19 C -0.266 4.266 20 H 0.074 0.926 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.974 3.026 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.142 3.858 28 C 0.055 3.945 29 O -0.390 6.390 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.419 0.581 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.414 0.586 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.011 0.989 47 H 0.252 0.748 48 H -0.005 1.005 49 H 0.069 0.931 50 H 0.108 0.892 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.400 6.471 -12.083 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.138 4.138 4 C -0.169 4.169 5 C 0.051 3.949 6 H 0.174 0.826 7 N -0.376 5.376 8 C 0.398 3.602 9 N -0.425 5.425 10 O -0.498 6.498 11 C 0.275 3.725 12 O -0.437 6.437 13 N -0.366 5.366 14 C 0.019 3.981 15 C 0.024 3.976 16 H 0.094 0.906 17 C -0.011 4.011 18 N -0.337 5.337 19 C -0.395 4.395 20 H 0.092 0.908 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.802 3.198 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.192 1.192 27 C 0.016 3.984 28 C -0.023 4.023 29 O -0.309 6.309 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.256 0.744 40 H 0.242 0.758 41 H 0.247 0.753 42 H 0.251 0.749 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.029 0.971 47 H 0.061 0.939 48 H 0.013 0.987 49 H 0.087 0.913 50 H 0.126 0.874 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.302 5.562 -12.672 29.721 hybrid contribution 0.960 0.547 0.724 1.322 sum -25.342 6.109 -11.948 28.675 Atomic orbital electron populations 1.21737 0.94795 1.01781 1.02221 1.21536 0.96655 0.97124 1.01354 1.21476 0.92389 0.96898 1.03048 1.21930 0.97679 0.94125 1.03174 1.20814 0.88940 0.96802 0.88303 0.82622 1.44506 1.56248 1.33758 1.03121 1.16212 0.79265 0.82830 0.81926 1.42790 1.58352 1.34565 1.06755 1.90958 1.42509 1.29597 1.86731 1.21718 0.92478 0.75893 0.82420 1.90744 1.65869 1.49198 1.37859 1.45794 1.06856 1.73871 1.10066 1.21058 0.81478 1.01589 0.93930 1.22608 0.95043 0.85767 0.94220 0.90644 1.21611 0.93684 0.99265 0.86548 1.44363 1.57062 1.21708 1.10552 1.19572 1.18103 0.90179 1.11694 0.90845 1.25872 0.98310 0.97277 1.03285 1.70206 1.41753 1.12171 1.34164 0.85170 0.77009 0.78402 0.79261 1.20673 1.22387 1.19243 1.21327 0.91382 0.86304 0.99347 1.23171 0.95715 1.01525 0.81862 1.87830 1.82242 1.33310 1.27566 0.92694 0.92922 0.91691 0.93925 0.92007 0.89475 0.91887 0.92682 0.90461 0.74369 0.75807 0.75298 0.74919 0.89863 0.93420 0.90968 0.97085 0.93938 0.98700 0.91309 0.87373 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.80 5.93 30.60 0.18 -1.62 16 3 C -0.10 -1.21 5.10 30.59 0.16 -1.06 16 4 C -0.13 -2.37 4.54 30.59 0.14 -2.23 16 5 C 0.16 2.66 3.01 44.24 0.13 2.80 16 6 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 7 N -0.72 -10.63 4.66 -461.41 -2.15 -12.78 16 8 C 0.70 15.76 7.59 179.05 1.36 17.12 16 9 N -0.86 -11.21 8.88 -184.74 -1.64 -12.85 16 10 O -0.62 -21.57 13.03 18.47 0.24 -21.33 16 11 C 0.49 13.16 6.82 87.66 0.60 13.75 16 12 O -0.56 -21.00 13.68 19.43 0.27 -20.73 16 13 N -0.71 -17.58 5.51 -463.05 -2.55 -20.13 16 14 C 0.14 4.44 5.34 86.38 0.46 4.90 16 15 C 0.08 2.80 2.81 30.69 0.09 2.89 16 16 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.12 4.88 6.02 86.35 0.52 5.40 16 18 N -0.61 -30.98 3.05 -697.54 -2.13 -33.11 16 19 C -0.27 -14.47 9.65 84.03 0.81 -13.66 16 20 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 21 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 22 N -0.94 -55.37 11.14 21.65 0.24 -55.13 16 23 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.14 6.89 5.44 86.35 0.47 7.36 16 28 C 0.05 2.01 6.99 72.08 0.50 2.51 16 29 O -0.39 -14.04 10.34 -148.98 -1.54 -15.58 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.75 7.75 -2.39 -0.02 0.73 16 37 H 0.05 1.51 6.04 -2.39 -0.01 1.49 16 38 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.42 2.53 8.84 -92.71 -0.82 1.71 16 40 H 0.41 2.00 8.84 -92.71 -0.82 1.18 16 41 H 0.42 5.34 8.93 -92.70 -0.83 4.51 16 42 H 0.41 7.82 8.47 -92.71 -0.79 7.04 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 2.88 7.96 -2.39 -0.02 2.86 16 46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 49 H 0.07 3.67 6.14 -2.39 -0.01 3.66 16 50 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 51 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -84.31 406.61 -2.96 -87.27 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -2.28 Total: 23.38 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 6.55 Total: 34.83 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -8.22 Total: -133.99 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -1.03 Total: -57.64 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -84.31 -2.96 -87.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715299334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.427 kcal (2) G-P(sol) polarization free energy of solvation -84.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds