Wall clock time and date at job start Wed Apr 1 2020 01:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.53003 * 109.47273 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47273 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47081 * 55.00027 * 5 4 3 7 7 N 1.46499 * 109.47162 * 295.00317 * 5 4 3 8 8 C 1.34775 * 120.00125 * 299.99813 * 7 5 4 9 9 N 1.34779 * 120.00584 * 180.02562 * 8 7 5 10 10 O 1.21597 * 119.99989 * 0.02562 * 8 7 5 11 11 C 1.50698 * 109.47270 * 175.00347 * 5 4 3 12 12 O 1.21283 * 120.00346 * 99.99984 * 11 5 4 13 13 N 1.34788 * 119.99557 * 280.00166 * 11 5 4 14 14 C 1.46499 * 119.99811 * 179.97438 * 13 11 5 15 15 C 1.52991 * 109.47082 * 179.97438 * 14 13 11 16 16 H 1.08992 * 109.51702 * 60.10035 * 15 14 13 17 17 C 1.53295 * 109.51162 * 180.25567 * 15 14 13 18 18 N 1.47156 * 108.38530 * 172.22796 * 17 15 14 19 19 C 1.36932 * 120.98272 * 129.48521 * 18 17 15 20 20 H 1.08006 * 119.99897 * 206.20482 * 19 18 17 21 21 C 1.38809 * 120.00448 * 26.20875 * 19 18 17 22 22 N 1.31621 * 119.99962 * 16.92639 * 21 19 18 23 23 Si 1.86801 * 120.00162 * 196.93008 * 21 19 18 24 24 H 1.48499 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47113 * 120.00144 * 23 21 19 26 26 H 1.48506 * 109.46886 * 239.99831 * 23 21 19 27 27 C 1.47150 * 118.03386 * 309.46040 * 18 17 15 28 28 C 1.53296 * 108.38324 * 50.53582 * 27 18 17 29 29 O 1.42961 * 109.22418 * 307.69695 * 28 27 18 30 30 H 1.09002 * 109.47260 * 300.00112 * 1 2 3 31 31 H 1.08999 * 109.47206 * 60.00115 * 1 2 3 32 32 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47093 * 240.00414 * 2 1 3 34 34 H 1.08999 * 109.47206 * 119.99885 * 2 1 3 35 35 H 1.09002 * 109.47155 * 59.99823 * 3 2 1 36 36 H 1.08999 * 109.46996 * 300.00013 * 3 2 1 37 37 H 1.09001 * 109.46955 * 60.00394 * 4 3 2 38 38 H 1.08999 * 109.47174 * 299.99970 * 4 3 2 39 39 H 0.97002 * 120.00274 * 120.00018 * 7 5 4 40 40 H 0.96994 * 119.99512 * 359.97438 * 9 8 7 41 41 H 0.97000 * 120.00106 * 180.02562 * 9 8 7 42 42 H 0.96992 * 119.99999 * 359.97438 * 13 11 5 43 43 H 1.09003 * 109.47245 * 300.00354 * 14 13 11 44 44 H 1.09000 * 109.46981 * 59.99840 * 14 13 11 45 45 H 1.08999 * 109.68416 * 291.94520 * 17 15 14 46 46 H 1.09000 * 109.68298 * 52.50268 * 17 15 14 47 47 H 0.96995 * 120.00152 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.68156 * 290.81365 * 27 18 17 49 49 H 1.09002 * 109.71550 * 170.27477 * 27 18 17 50 50 H 1.09006 * 109.51009 * 187.77051 * 28 27 18 51 51 H 1.09003 * 109.55622 * 67.65116 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8413 7 7 3.6929 3.5393 -1.2523 8 6 4.1178 3.0432 -2.4312 9 7 3.7622 3.6454 -3.5833 10 8 4.8222 2.0523 -2.4554 11 6 5.5818 2.8869 0.1244 12 8 6.2718 3.0394 -0.8613 13 7 6.1582 2.7192 1.3312 14 6 7.6182 2.7205 1.4521 15 6 8.0088 2.5136 2.9167 16 1 7.6181 1.5581 3.2663 17 6 9.5364 2.5212 3.0452 18 7 9.8819 2.5093 4.4756 19 6 10.7782 1.6036 4.9768 20 1 10.7233 1.3067 6.0138 21 6 11.7574 1.0670 4.1522 22 7 12.0465 1.6500 3.0081 23 14 12.6650 -0.4828 4.6662 24 1 12.1582 -0.9387 5.9854 25 1 12.4405 -1.5464 3.6545 26 1 14.1184 -0.1947 4.7673 27 6 9.2361 3.5000 5.3513 28 6 7.7232 3.4448 5.1104 29 8 7.4646 3.5710 3.7101 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8892 38 1 3.9329 0.9289 0.8908 39 1 3.1307 4.3296 -1.2331 40 1 3.2000 4.4356 -3.5641 41 1 4.0678 3.2881 -4.4318 42 1 5.6064 2.5977 2.1195 43 1 8.0336 1.9143 0.8474 44 1 8.0108 3.6756 1.1031 45 1 9.9500 1.6369 2.5605 46 1 9.9397 3.4193 2.5775 47 1 12.7310 1.2753 2.4321 48 1 9.6092 4.4967 5.1157 49 1 9.4506 3.2646 6.3937 50 1 7.2393 4.2622 5.6452 51 1 7.3312 2.4929 5.4687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715299336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:45 Heat of formation + Delta-G solvation = -128.945875 kcal Electronic energy + Delta-G solvation = -31140.088135 eV Core-core repulsion = 26880.682542 eV Total energy + Delta-G solvation = -4259.405593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.60071 -40.34831 -39.58234 -37.15733 -36.44502 -35.76676 -35.14986 -34.38436 -33.26478 -32.56957 -31.26268 -29.19267 -28.16238 -26.59326 -25.05730 -23.83469 -23.34791 -22.55742 -21.77794 -21.49472 -20.73773 -19.53132 -18.96034 -18.43611 -17.70791 -17.48734 -17.09027 -16.85895 -16.49329 -16.12265 -15.98159 -15.76874 -15.50503 -15.35182 -15.19809 -15.02511 -14.96710 -14.62760 -14.54813 -14.12242 -14.11071 -13.59372 -13.43131 -13.16676 -13.02099 -12.73202 -12.70595 -12.51084 -12.19147 -12.17139 -12.07335 -11.99384 -11.87864 -11.74797 -11.43454 -11.32839 -11.20921 -10.84022 -10.78500 -10.56504 -10.44647 -10.05162 -9.83939 -8.77056 -7.92722 -5.40353 1.44180 1.46286 1.56806 1.66379 1.90869 2.25854 2.45440 2.53329 2.79551 3.22508 3.49313 3.68870 3.73868 3.93796 4.04894 4.06365 4.07011 4.19819 4.26421 4.30118 4.44844 4.47219 4.52340 4.57676 4.61558 4.68745 4.82483 4.87182 4.90474 4.98117 5.03483 5.06841 5.07537 5.22948 5.25867 5.35488 5.41770 5.44774 5.51351 5.53474 5.56589 5.58918 6.00199 6.13263 6.25693 6.32201 6.64944 7.03639 7.23566 7.36899 7.73310 7.88452 8.26684 9.13192 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.002452 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.396085 B =11414.298201 C =11748.768371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.101 4.101 4 C -0.130 4.130 5 C 0.163 3.837 6 H 0.156 0.844 7 N -0.719 5.719 8 C 0.700 3.300 9 N -0.855 5.855 10 O -0.619 6.619 11 C 0.487 3.513 12 O -0.562 6.562 13 N -0.709 5.709 14 C 0.148 3.852 15 C 0.081 3.919 16 H 0.065 0.935 17 C 0.159 3.841 18 N -0.614 5.614 19 C -0.263 4.263 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.100 3.900 28 C 0.057 3.943 29 O -0.386 6.386 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.419 0.581 40 H 0.412 0.588 41 H 0.415 0.585 42 H 0.415 0.585 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.063 0.937 46 H -0.003 1.003 47 H 0.250 0.750 48 H 0.014 0.986 49 H 0.073 0.927 50 H 0.124 0.876 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.405 4.728 -4.587 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.169 4.169 5 C 0.053 3.947 6 H 0.174 0.826 7 N -0.377 5.377 8 C 0.398 3.602 9 N -0.424 5.424 10 O -0.498 6.498 11 C 0.273 3.727 12 O -0.439 6.439 13 N -0.363 5.363 14 C 0.022 3.978 15 C 0.021 3.979 16 H 0.083 0.917 17 C 0.032 3.968 18 N -0.339 5.339 19 C -0.393 4.393 20 H 0.094 0.906 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.185 1.185 25 H -0.218 1.218 26 H -0.220 1.220 27 C -0.025 4.025 28 C -0.020 4.020 29 O -0.306 6.306 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.256 0.744 40 H 0.242 0.758 41 H 0.247 0.753 42 H 0.252 0.748 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.092 0.908 50 H 0.142 0.858 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.315 4.129 -5.303 28.130 hybrid contribution 1.202 -0.412 -0.131 1.277 sum -26.113 3.717 -5.434 26.930 Atomic orbital electron populations 1.21738 0.94793 1.01790 1.02229 1.21531 0.96657 0.97032 1.01397 1.21482 0.92284 0.96985 1.03093 1.21948 0.97785 0.93914 1.03293 1.20816 0.88621 0.97029 0.88262 0.82640 1.44509 1.56217 1.33787 1.03148 1.16215 0.79229 0.82854 0.81932 1.42781 1.58356 1.34576 1.06735 1.90956 1.42513 1.29610 1.86746 1.21821 0.92627 0.75865 0.82404 1.90750 1.65905 1.49159 1.38097 1.45752 1.06578 1.73956 1.09991 1.20947 0.81563 1.01213 0.94043 1.22675 0.94753 0.90573 0.89870 0.91703 1.21076 0.90728 0.99421 0.85586 1.44367 1.48881 1.36352 1.04302 1.19599 1.06565 1.16424 0.96669 0.90594 1.25876 0.98109 1.02863 0.98071 1.70196 1.33806 1.40286 1.14068 0.85168 0.77651 0.79334 0.78071 1.18490 1.21807 1.22015 1.21856 0.93715 0.91524 0.95388 1.23098 0.94970 1.02706 0.81249 1.87783 1.76328 1.47646 1.18796 0.91641 0.92759 0.92888 0.93941 0.91869 0.89392 0.91943 0.92618 0.90198 0.74374 0.75795 0.75285 0.74787 0.92073 0.92914 0.91855 0.98476 0.94051 0.96753 0.90830 0.85786 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.81 5.93 30.59 0.18 -1.62 16 3 C -0.10 -1.26 5.10 30.59 0.16 -1.11 16 4 C -0.13 -2.46 4.54 30.59 0.14 -2.32 16 5 C 0.16 2.99 3.01 44.24 0.13 3.12 16 6 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 7 N -0.72 -12.05 4.66 -461.41 -2.15 -14.20 16 8 C 0.70 17.09 7.59 179.05 1.36 18.45 16 9 N -0.85 -12.71 8.88 -184.74 -1.64 -14.35 16 10 O -0.62 -22.74 13.03 18.44 0.24 -22.50 16 11 C 0.49 14.57 6.82 87.65 0.60 15.16 16 12 O -0.56 -23.16 13.68 19.42 0.27 -22.89 16 13 N -0.71 -19.91 5.45 -463.06 -2.52 -22.43 16 14 C 0.15 5.38 5.37 86.38 0.46 5.84 16 15 C 0.08 3.07 2.87 30.69 0.09 3.16 16 16 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 17 C 0.16 7.88 4.73 86.35 0.41 8.29 16 18 N -0.61 -31.01 3.05 -697.54 -2.13 -33.14 16 19 C -0.26 -14.37 9.65 84.03 0.81 -13.56 16 20 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 21 C -0.05 -3.04 4.95 84.86 0.42 -2.62 16 22 N -0.94 -56.77 11.14 21.65 0.24 -56.52 16 23 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 C 0.10 4.03 6.73 86.35 0.58 4.61 16 28 C 0.06 1.77 6.98 72.08 0.50 2.27 16 29 O -0.39 -13.28 10.13 -148.98 -1.51 -14.79 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 37 H 0.06 1.56 6.04 -2.39 -0.01 1.55 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 3.33 8.84 -92.71 -0.82 2.51 16 40 H 0.41 2.68 8.84 -92.71 -0.82 1.86 16 41 H 0.42 6.03 8.93 -92.71 -0.83 5.20 16 42 H 0.42 8.87 8.35 -92.71 -0.77 8.10 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 3.54 6.14 -2.39 -0.01 3.53 16 46 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 50 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 51 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -85.95 406.29 -2.89 -88.83 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -2.27 Total: 26.07 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 6.56 Total: 38.78 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -8.20 Total: -140.64 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -1.00 Total: -60.18 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -85.95 -2.89 -88.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715299336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.112 kcal (2) G-P(sol) polarization free energy of solvation -85.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds