Wall clock time and date at job start Wed Apr 1 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39564 * 120.13918 * 262.71817 * 3 2 1 5 5 C 1.37947 * 119.84784 * 180.27452 * 4 3 2 6 6 C 1.38367 * 120.14981 * 359.72174 * 5 4 3 7 7 C 1.38316 * 120.28360 * 0.02562 * 6 5 4 8 8 C 1.37995 * 120.14260 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.07145 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47178 * 264.99871 * 9 8 7 11 11 O 1.21280 * 120.00401 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00125 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99837 * 0.02562 * 12 10 9 14 14 C 1.46493 * 120.00498 * 180.02562 * 12 10 9 15 15 C 1.53005 * 109.47092 * 89.99850 * 14 12 10 16 16 C 1.52999 * 109.47150 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47352 * 305.00326 * 16 15 14 18 18 N 1.46506 * 109.47091 * 64.99957 * 16 15 14 19 19 C 1.36939 * 120.00073 * 204.72442 * 18 16 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47227 * 89.99498 * 23 21 19 25 25 H 1.48496 * 109.47434 * 209.99930 * 23 21 19 26 26 H 1.48507 * 109.46769 * 330.00032 * 23 21 19 27 27 C 1.52995 * 109.47197 * 185.00058 * 16 15 14 28 28 C 1.53001 * 109.47249 * 305.00127 * 27 16 15 29 29 C 1.52999 * 109.47182 * 65.00413 * 27 16 15 30 30 H 4.52083 * 14.02243 * 359.97438 * 4 2 1 31 31 H 1.07995 * 120.07317 * 359.96990 * 4 3 2 32 32 H 1.08002 * 119.92366 * 179.74313 * 5 4 3 33 33 H 1.07996 * 119.85584 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.93012 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46996 * 144.99806 * 9 8 7 36 36 H 1.09000 * 109.47037 * 25.00403 * 9 8 7 37 37 H 1.08999 * 109.47102 * 270.00088 * 13 12 10 38 38 H 1.09008 * 109.46619 * 29.99846 * 13 12 10 39 39 H 1.09001 * 109.47137 * 149.99844 * 13 12 10 40 40 H 1.09006 * 109.47104 * 330.00469 * 14 12 10 41 41 H 1.09000 * 109.47564 * 210.00270 * 14 12 10 42 42 H 1.08996 * 109.46681 * 60.00306 * 15 14 12 43 43 H 1.09004 * 109.47038 * 300.00156 * 15 14 12 44 44 H 0.97005 * 119.99811 * 25.00235 * 18 16 15 45 45 H 0.97000 * 120.00679 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.47136 * 184.99976 * 27 16 15 47 47 H 1.09000 * 109.47175 * 59.99873 * 28 27 16 48 48 H 1.08996 * 109.47185 * 179.97438 * 28 27 16 49 49 H 1.08995 * 109.47016 * 299.99750 * 28 27 16 50 50 H 1.08997 * 109.47211 * 59.99787 * 29 27 16 51 51 H 1.08996 * 109.47269 * 179.97438 * 29 27 16 52 52 H 1.09000 * 109.46729 * 299.99812 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.1539 1.1972 5 6 4.6861 0.1594 1.1895 6 6 5.3751 0.0075 -0.0008 7 6 4.6866 -0.1501 -1.1900 8 6 3.3066 -0.1573 -1.1960 9 6 2.5581 -0.3297 -2.4927 10 6 2.1945 1.0238 -3.0466 11 8 2.5124 2.0294 -2.4479 12 7 1.5170 1.1168 -4.2080 13 6 1.1335 -0.0980 -4.9317 14 6 1.1641 2.4325 -4.7469 15 6 2.2882 2.9284 -5.6588 16 6 1.9198 4.3028 -6.2211 17 1 0.9511 4.2447 -6.7175 18 7 1.8505 5.2753 -5.1275 19 6 1.0799 6.3996 -5.2589 20 1 0.5230 6.5693 -6.1686 21 6 1.0146 7.3212 -4.2229 22 7 1.6929 7.1142 -3.1141 23 14 -0.0371 8.8546 -4.4018 24 1 -1.4090 8.5744 -3.9075 25 1 0.5591 9.9591 -3.6082 26 1 -0.0974 9.2493 -5.8322 27 6 2.9836 4.7434 -7.2286 28 6 4.3616 4.7051 -6.5649 29 6 2.9701 3.7974 -8.4310 30 1 -1.0500 0.0005 -0.0002 31 1 2.7701 0.2730 2.1269 32 1 5.2296 0.2821 2.1148 33 1 6.4550 0.0120 -0.0012 34 1 5.2301 -0.2678 -2.1158 35 1 1.6497 -0.9051 -2.3140 36 1 3.1879 -0.8581 -3.2083 37 1 1.9267 -0.3723 -5.6271 38 1 0.9764 -0.9097 -4.2212 39 1 0.2122 0.0842 -5.4848 40 1 1.0253 3.1360 -3.9259 41 1 0.2396 2.3548 -5.3190 42 1 2.4270 2.2249 -6.4797 43 1 3.2126 3.0062 -5.0866 44 1 2.3536 5.1246 -4.3119 45 1 1.6476 7.7583 -2.3903 46 1 2.7693 5.7586 -7.5627 47 1 4.5759 3.6899 -6.2309 48 1 5.1195 5.0186 -7.2829 49 1 4.3712 5.3791 -5.7084 50 1 1.9884 3.8247 -8.9038 51 1 3.7276 4.1116 -9.1490 52 1 3.1844 2.7823 -8.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717516687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:24 Heat of formation + Delta-G solvation = 46.439079 kcal Electronic energy + Delta-G solvation = -30196.199550 eV Core-core repulsion = 26355.248482 eV Total energy + Delta-G solvation = -3840.951068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.17336 -38.92652 -37.34106 -35.27555 -33.97428 -33.07217 -32.82483 -31.13696 -30.26352 -29.60188 -27.75722 -26.70591 -26.56017 -24.82225 -23.37266 -22.98668 -22.18151 -21.45409 -19.16471 -18.60243 -18.30381 -17.15060 -16.82866 -16.45782 -15.96183 -15.77789 -15.15506 -15.08561 -14.66779 -14.18878 -13.85890 -13.75246 -13.63440 -13.35720 -13.25376 -13.11821 -12.92817 -12.81198 -12.74626 -12.34685 -12.11656 -11.99067 -11.72584 -11.51820 -11.43425 -11.28932 -11.16137 -11.05656 -10.87551 -10.79851 -10.44951 -10.42371 -10.28726 -10.13450 -10.02845 -9.72231 -9.49354 -9.43905 -8.86135 -8.78854 -8.48975 -8.36901 -6.80660 -5.62969 -2.91970 0.90591 1.29129 2.72827 2.90227 3.00086 3.23421 3.49538 3.54380 3.56515 3.93843 4.25948 4.55890 4.68591 4.72103 4.79199 4.94541 5.04818 5.12297 5.28605 5.30855 5.36733 5.46789 5.49217 5.51995 5.54450 5.59255 5.61710 5.72193 5.76952 5.86289 5.91411 5.99941 6.03422 6.04085 6.15870 6.27149 6.33590 6.38090 6.38866 6.39691 6.46131 6.50625 6.51342 6.75695 6.82538 6.87190 6.90484 6.97859 7.14951 7.20273 7.51902 7.61339 7.80305 8.47557 8.54377 9.65520 10.25688 10.60456 11.58728 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003242 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.743557 B = 8634.698431 C = 9752.413605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.024 3.976 4 C -0.096 4.096 5 C -0.121 4.121 6 C -0.109 4.109 7 C -0.106 4.106 8 C -0.041 4.041 9 C -0.103 4.103 10 C 0.509 3.491 11 O -0.509 6.509 12 N -0.619 5.619 13 C 0.078 3.922 14 C 0.119 3.881 15 C -0.135 4.135 16 C 0.186 3.814 17 H 0.044 0.956 18 N -0.720 5.720 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.011 4.011 22 N -0.927 5.927 23 Si 0.901 3.099 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.283 1.283 27 C -0.115 4.115 28 C -0.136 4.136 29 C -0.144 4.144 30 H 0.223 0.777 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.387 0.613 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.042 0.958 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -22.214 0.636 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.024 3.976 4 C -0.114 4.114 5 C -0.139 4.139 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.041 4.041 9 C -0.143 4.143 10 C 0.295 3.705 11 O -0.382 6.382 12 N -0.354 5.354 13 C -0.066 4.066 14 C -0.002 4.002 15 C -0.174 4.174 16 C 0.075 3.925 17 H 0.062 0.938 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.575 5.575 23 Si 0.732 3.268 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.136 4.136 28 C -0.193 4.193 29 C -0.202 4.202 30 H 0.240 0.760 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.175 -21.517 0.938 21.770 hybrid contribution -0.611 0.929 0.027 1.112 sum 2.563 -20.588 0.965 20.770 Atomic orbital electron populations 1.24851 0.95745 0.99470 0.99541 1.19963 0.92017 1.01197 1.01063 1.15771 0.86540 1.01920 0.93409 1.21143 0.94261 0.99076 0.96890 1.21043 0.93833 1.00578 0.98403 1.21196 1.00031 0.99060 0.92420 1.20904 0.92925 1.00141 0.98460 1.19348 0.93443 0.98657 0.92662 1.20734 1.01595 0.96688 0.95270 1.20344 0.78514 0.90908 0.80697 1.90835 1.51707 1.37604 1.58093 1.47956 1.57087 1.07637 1.22705 1.21775 1.00686 0.87149 0.96941 1.21598 0.96909 0.82767 0.98964 1.22225 0.99176 0.97569 0.98437 1.20159 0.95252 0.87660 0.89403 0.93831 1.42489 1.56021 1.21994 1.15569 1.19191 1.20213 0.97633 0.99875 0.91434 1.24714 1.00632 0.98923 0.96505 1.69687 1.45235 1.36822 1.05740 0.86289 0.80020 0.83448 0.77017 1.21912 1.21940 1.20918 1.21791 0.97084 0.99384 0.95378 1.21722 0.95911 1.01025 1.00675 1.21883 1.00524 0.99578 0.98169 0.76049 0.85686 0.85609 0.85697 0.85662 0.88250 0.88113 0.92815 0.91553 0.91027 0.88340 0.91344 0.92493 0.91563 0.77885 0.93634 0.91332 0.93804 0.94661 0.91703 0.93426 0.93915 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.14 -2.02 11.80 -38.84 -0.46 -2.47 16 3 C 0.02 0.34 5.72 -107.00 -0.61 -0.28 16 4 C -0.10 -1.19 9.75 -39.19 -0.38 -1.58 16 5 C -0.12 -1.32 10.03 -39.64 -0.40 -1.71 16 6 C -0.11 -1.18 10.04 -39.51 -0.40 -1.58 16 7 C -0.11 -1.27 9.67 -39.64 -0.38 -1.65 16 8 C -0.04 -0.54 4.41 -104.23 -0.46 -1.00 16 9 C -0.10 -1.22 3.89 -29.03 -0.11 -1.33 16 10 C 0.51 8.19 7.66 -10.99 -0.08 8.11 16 11 O -0.51 -10.99 15.61 5.56 0.09 -10.91 16 12 N -0.62 -8.81 2.87 -181.56 -0.52 -9.33 16 13 C 0.08 0.71 10.29 59.85 0.62 1.33 16 14 C 0.12 2.04 5.34 -4.04 -0.02 2.02 16 15 C -0.13 -2.31 4.28 -26.73 -0.11 -2.43 16 16 C 0.19 3.69 2.06 -67.93 -0.14 3.55 16 17 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 18 N -0.72 -18.19 4.03 -53.42 -0.22 -18.41 16 19 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 23 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.11 -2.09 2.87 -90.62 -0.26 -2.35 16 28 C -0.14 -2.46 8.59 37.16 0.32 -2.14 16 29 C -0.14 -2.07 8.95 37.16 0.33 -1.74 16 30 H 0.22 1.85 7.80 -54.09 -0.42 1.43 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.10 1.03 6.55 -51.93 -0.34 0.69 16 36 H 0.10 0.89 8.02 -51.93 -0.42 0.48 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.48 6.44 -51.92 -0.33 0.14 16 39 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 40 H 0.10 2.18 7.03 -51.93 -0.37 1.81 16 41 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 42 H 0.06 0.83 6.35 -51.93 -0.33 0.50 16 43 H 0.07 1.28 6.65 -51.93 -0.35 0.94 16 44 H 0.39 10.87 7.80 -40.82 -0.32 10.55 16 45 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.04 0.74 6.46 -51.93 -0.34 0.40 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.38 7.75 -51.93 -0.40 0.98 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.05 0.65 6.46 -51.93 -0.34 0.32 16 LS Contribution 426.73 15.07 6.43 6.43 Total: -1.00 -35.45 426.73 -9.29 -44.73 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.54 Total: 12.04 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.23 Total: -14.11 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.01 Total: -56.13 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -35.45 -9.29 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717516687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.173 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds