Wall clock time and date at job start Wed Apr 1 2020 02:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39564 * 120.13918 * 262.71817 * 3 2 1 5 5 C 1.37947 * 119.84784 * 180.27452 * 4 3 2 6 6 C 1.38367 * 120.14981 * 359.72174 * 5 4 3 7 7 C 1.38316 * 120.28360 * 0.02562 * 6 5 4 8 8 C 1.37995 * 120.14260 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.07145 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47178 * 264.99871 * 9 8 7 11 11 O 1.21280 * 120.00401 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00125 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99837 * 0.02562 * 12 10 9 14 14 C 1.46493 * 120.00498 * 180.02562 * 12 10 9 15 15 C 1.53005 * 109.47092 * 89.99850 * 14 12 10 16 16 C 1.52999 * 109.47150 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47352 * 305.00326 * 16 15 14 18 18 N 1.46506 * 109.47091 * 64.99957 * 16 15 14 19 19 C 1.36939 * 120.00073 * 204.72442 * 18 16 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47227 * 89.99498 * 23 21 19 25 25 H 1.48496 * 109.47434 * 209.99930 * 23 21 19 26 26 H 1.48507 * 109.46769 * 330.00032 * 23 21 19 27 27 C 1.52995 * 109.47197 * 185.00058 * 16 15 14 28 28 C 1.53001 * 109.47249 * 305.00127 * 27 16 15 29 29 C 1.52999 * 109.47182 * 65.00413 * 27 16 15 30 30 H 4.52083 * 14.02243 * 359.97438 * 4 2 1 31 31 H 1.07995 * 120.07317 * 359.96990 * 4 3 2 32 32 H 1.08002 * 119.92366 * 179.74313 * 5 4 3 33 33 H 1.07996 * 119.85584 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.93012 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46996 * 144.99806 * 9 8 7 36 36 H 1.09000 * 109.47037 * 25.00403 * 9 8 7 37 37 H 1.08999 * 109.47102 * 270.00088 * 13 12 10 38 38 H 1.09008 * 109.46619 * 29.99846 * 13 12 10 39 39 H 1.09001 * 109.47137 * 149.99844 * 13 12 10 40 40 H 1.09006 * 109.47104 * 330.00469 * 14 12 10 41 41 H 1.09000 * 109.47564 * 210.00270 * 14 12 10 42 42 H 1.08996 * 109.46681 * 60.00306 * 15 14 12 43 43 H 1.09004 * 109.47038 * 300.00156 * 15 14 12 44 44 H 0.97005 * 119.99811 * 25.00235 * 18 16 15 45 45 H 0.97000 * 120.00679 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.47136 * 184.99976 * 27 16 15 47 47 H 1.09000 * 109.47175 * 59.99873 * 28 27 16 48 48 H 1.08996 * 109.47185 * 179.97438 * 28 27 16 49 49 H 1.08995 * 109.47016 * 299.99750 * 28 27 16 50 50 H 1.08997 * 109.47211 * 59.99787 * 29 27 16 51 51 H 1.08996 * 109.47269 * 179.97438 * 29 27 16 52 52 H 1.09000 * 109.46729 * 299.99812 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.1539 1.1972 5 6 4.6861 0.1594 1.1895 6 6 5.3751 0.0075 -0.0008 7 6 4.6866 -0.1501 -1.1900 8 6 3.3066 -0.1573 -1.1960 9 6 2.5581 -0.3297 -2.4927 10 6 2.1945 1.0238 -3.0466 11 8 2.5124 2.0294 -2.4479 12 7 1.5170 1.1168 -4.2080 13 6 1.1335 -0.0980 -4.9317 14 6 1.1641 2.4325 -4.7469 15 6 2.2882 2.9284 -5.6588 16 6 1.9198 4.3028 -6.2211 17 1 0.9511 4.2447 -6.7175 18 7 1.8505 5.2753 -5.1275 19 6 1.0799 6.3996 -5.2589 20 1 0.5230 6.5693 -6.1686 21 6 1.0146 7.3212 -4.2229 22 7 1.6929 7.1142 -3.1141 23 14 -0.0371 8.8546 -4.4018 24 1 -1.4090 8.5744 -3.9075 25 1 0.5591 9.9591 -3.6082 26 1 -0.0974 9.2493 -5.8322 27 6 2.9836 4.7434 -7.2286 28 6 4.3616 4.7051 -6.5649 29 6 2.9701 3.7974 -8.4310 30 1 -1.0500 0.0005 -0.0002 31 1 2.7701 0.2730 2.1269 32 1 5.2296 0.2821 2.1148 33 1 6.4550 0.0120 -0.0012 34 1 5.2301 -0.2678 -2.1158 35 1 1.6497 -0.9051 -2.3140 36 1 3.1879 -0.8581 -3.2083 37 1 1.9267 -0.3723 -5.6271 38 1 0.9764 -0.9097 -4.2212 39 1 0.2122 0.0842 -5.4848 40 1 1.0253 3.1360 -3.9259 41 1 0.2396 2.3548 -5.3190 42 1 2.4270 2.2249 -6.4797 43 1 3.2126 3.0062 -5.0866 44 1 2.3536 5.1246 -4.3119 45 1 1.6476 7.7583 -2.3903 46 1 2.7693 5.7586 -7.5627 47 1 4.5759 3.6899 -6.2309 48 1 5.1195 5.0186 -7.2829 49 1 4.3712 5.3791 -5.7084 50 1 1.9884 3.8247 -8.9038 51 1 3.7276 4.1116 -9.1490 52 1 3.1844 2.7823 -8.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717516687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:23 Heat of formation + Delta-G solvation = 26.093572 kcal Electronic energy + Delta-G solvation = -30197.081797 eV Core-core repulsion = 26355.248482 eV Total energy + Delta-G solvation = -3841.833315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26773 -39.96948 -38.89192 -36.54096 -35.06103 -34.90457 -33.82202 -32.66851 -31.40187 -31.12719 -28.80842 -27.94698 -27.71770 -26.41451 -24.81652 -24.23425 -23.56419 -22.51986 -20.24000 -19.85790 -19.56744 -19.21515 -18.03420 -17.42819 -17.05424 -16.83237 -16.70242 -16.16579 -16.02711 -15.65629 -15.52238 -15.08700 -14.88916 -14.62256 -14.50778 -14.28420 -14.07263 -14.01443 -13.73710 -13.63344 -13.27113 -13.09247 -12.91861 -12.86895 -12.79727 -12.74193 -12.45970 -12.38914 -12.20054 -12.17727 -12.10805 -12.06883 -11.81223 -11.66480 -11.39887 -11.35526 -11.19232 -10.86596 -10.78295 -9.77466 -9.58645 -9.40779 -8.90661 -7.88180 -5.16053 -0.01222 0.38932 1.43908 1.46247 1.54430 1.71371 1.74181 2.05015 2.14497 2.57844 2.99257 3.38597 3.43806 3.62606 3.80636 3.88771 3.94356 4.06995 4.13145 4.14113 4.27039 4.29634 4.37221 4.42780 4.46140 4.53329 4.54708 4.61410 4.65335 4.72688 4.74490 4.77125 4.86651 4.91235 4.95834 4.97510 5.07148 5.12863 5.16812 5.19890 5.31470 5.37339 5.42470 5.46651 5.52359 5.52385 5.55300 5.64085 5.65208 5.72188 6.01357 6.32246 6.49347 6.55387 7.30211 7.37452 8.18106 8.39608 9.35254 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003242 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.743557 B = 8634.698431 C = 9752.413605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.184 4.184 3 C -0.007 4.007 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.062 4.062 9 C -0.090 4.090 10 C 0.502 3.498 11 O -0.578 6.578 12 N -0.615 5.615 13 C 0.068 3.932 14 C 0.126 3.874 15 C -0.116 4.116 16 C 0.180 3.820 17 H 0.047 0.953 18 N -0.730 5.730 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.967 3.033 24 H -0.289 1.289 25 H -0.301 1.301 26 H -0.267 1.267 27 C -0.111 4.111 28 C -0.129 4.129 29 C -0.133 4.133 30 H 0.255 0.745 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.368 0.632 45 H 0.245 0.755 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.019 0.981 50 H 0.057 0.943 51 H 0.057 0.943 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -24.773 -2.002 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C -0.007 4.007 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.063 4.063 9 C -0.130 4.130 10 C 0.291 3.709 11 O -0.457 6.457 12 N -0.348 5.348 13 C -0.073 4.073 14 C 0.003 3.997 15 C -0.155 4.155 16 C 0.071 3.929 17 H 0.065 0.935 18 N -0.369 5.369 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.797 3.203 24 H -0.217 1.217 25 H -0.228 1.228 26 H -0.191 1.191 27 C -0.132 4.132 28 C -0.186 4.186 29 C -0.191 4.191 30 H 0.271 0.729 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.199 0.801 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.039 -24.147 -1.798 24.404 hybrid contribution -0.582 1.650 0.801 1.925 sum 2.456 -22.497 -0.997 22.652 Atomic orbital electron populations 1.25692 0.96567 0.98198 0.98112 1.20489 0.92870 1.02530 1.02514 1.16155 0.87062 1.03004 0.94502 1.21417 0.95288 0.99618 0.96956 1.21415 0.93402 0.99538 0.99774 1.21606 1.01540 0.97997 0.92040 1.21261 0.92729 0.99831 0.99762 1.19638 0.94305 0.99300 0.93040 1.20733 1.02789 0.94191 0.95250 1.21133 0.77542 0.91697 0.80504 1.90810 1.54596 1.40170 1.60108 1.48025 1.56102 1.08130 1.22525 1.22160 1.02150 0.85282 0.97690 1.21283 0.97874 0.83518 0.96988 1.22045 0.97775 0.96654 0.99043 1.20455 0.96090 0.87972 0.88393 0.93530 1.42677 1.55383 1.22489 1.16391 1.19616 1.18996 0.97904 0.99514 0.90539 1.25521 1.02776 1.02399 0.96491 1.69890 1.47873 1.37899 1.06741 0.85220 0.78081 0.79492 0.77506 1.21659 1.22797 1.19142 1.21662 0.96048 0.99021 0.96487 1.21644 0.96768 1.00737 0.99472 1.21782 1.01835 0.99185 0.96312 0.72928 0.85007 0.82974 0.82930 0.83806 0.86723 0.84565 0.90418 0.89232 0.89627 0.94330 0.89376 0.88501 0.94122 0.80103 0.94574 0.94176 0.92476 0.92561 0.96162 0.92365 0.92375 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 19.25 74.32 1.43 -2.69 16 2 C -0.18 -5.39 11.80 30.01 0.35 -5.04 16 3 C -0.01 -0.21 5.72 -21.41 -0.12 -0.33 16 4 C -0.11 -2.98 9.75 22.52 0.22 -2.76 16 5 C -0.12 -2.67 10.03 22.23 0.22 -2.44 16 6 C -0.11 -2.38 10.04 22.32 0.22 -2.16 16 7 C -0.12 -2.75 9.67 22.23 0.21 -2.54 16 8 C -0.06 -1.68 4.41 -19.61 -0.09 -1.77 16 9 C -0.09 -2.03 3.89 29.10 0.11 -1.92 16 10 C 0.50 16.26 7.66 87.65 0.67 16.94 16 11 O -0.58 -26.55 15.61 -3.03 -0.05 -26.60 16 12 N -0.61 -16.74 2.87 -846.73 -2.43 -19.17 16 13 C 0.07 0.99 10.29 127.77 1.31 2.30 16 14 C 0.13 4.34 5.34 86.38 0.46 4.80 16 15 C -0.12 -3.88 4.28 30.60 0.13 -3.75 16 16 C 0.18 7.09 2.06 44.99 0.09 7.18 16 17 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 18 N -0.73 -38.47 4.03 -322.93 -1.30 -39.77 16 19 C -0.23 -13.11 9.93 84.03 0.83 -12.28 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 22 N -0.97 -64.37 13.06 21.65 0.28 -64.09 16 23 Si 0.97 48.59 29.55 68.60 2.03 50.62 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 27 C -0.11 -3.92 2.87 -10.80 -0.03 -3.95 16 28 C -0.13 -4.63 8.59 71.98 0.62 -4.01 16 29 C -0.13 -3.34 8.95 71.98 0.64 -2.70 16 30 H 0.25 3.91 7.80 -4.42 -0.03 3.87 16 31 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.11 2.18 6.55 -2.39 -0.02 2.17 16 36 H 0.14 2.00 8.02 -2.39 -0.02 1.98 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.92 6.44 -2.38 -0.02 0.90 16 39 H 0.09 1.04 7.89 -2.39 -0.02 1.02 16 40 H 0.04 1.81 7.03 -2.38 -0.02 1.79 16 41 H 0.09 2.61 7.89 -2.39 -0.02 2.59 16 42 H 0.10 2.46 6.35 -2.39 -0.02 2.44 16 43 H 0.04 1.58 6.65 -2.39 -0.02 1.57 16 44 H 0.37 22.09 7.80 -92.70 -0.72 21.37 16 45 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.06 1.87 6.46 -2.39 -0.02 1.86 16 48 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.02 0.87 7.75 -2.39 -0.02 0.85 16 50 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 Total: -1.00 -85.23 426.73 6.48 -78.75 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.17 Total: 41.78 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 7.77 Total: -21.51 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -3.45 Total: -123.03 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -85.23 6.48 -78.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717516687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.841 kcal (2) G-P(sol) polarization free energy of solvation -85.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds