Wall clock time and date at job start Wed Apr 1 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39561 * 120.14316 * 173.83875 * 3 2 1 5 5 C 1.37949 * 119.85672 * 180.27505 * 4 3 2 6 6 C 1.38360 * 120.14491 * 359.72775 * 5 4 3 7 7 C 1.38326 * 120.28400 * 359.97438 * 6 5 4 8 8 C 1.37991 * 120.14422 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.07609 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47365 * 265.00474 * 9 8 7 11 11 O 1.21282 * 119.99442 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00079 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00063 * 359.97438 * 12 10 9 14 14 C 1.46503 * 120.00160 * 180.02562 * 12 10 9 15 15 C 1.52997 * 109.47297 * 89.99879 * 14 12 10 16 16 C 1.52999 * 109.47080 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.47434 * 54.99895 * 16 15 14 18 18 N 1.46498 * 109.46963 * 294.99494 * 16 15 14 19 19 C 1.36943 * 119.99752 * 154.72381 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.52997 * 109.47114 * 174.99701 * 16 15 14 28 28 C 1.53003 * 109.47435 * 179.97438 * 27 16 15 29 29 C 1.53003 * 109.47241 * 300.00025 * 27 16 15 30 30 H 4.52081 * 14.02107 * 359.97438 * 4 2 1 31 31 H 1.08000 * 120.07114 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.92800 * 179.74679 * 5 4 3 33 33 H 1.08003 * 119.86132 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.92600 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47006 * 144.99890 * 9 8 7 36 36 H 1.09005 * 109.46742 * 25.00597 * 9 8 7 37 37 H 1.09005 * 109.47177 * 269.99953 * 13 12 10 38 38 H 1.09000 * 109.47271 * 30.00397 * 13 12 10 39 39 H 1.08998 * 109.47275 * 150.00022 * 13 12 10 40 40 H 1.09002 * 109.46404 * 329.99577 * 14 12 10 41 41 H 1.08998 * 109.47180 * 209.99833 * 14 12 10 42 42 H 1.08997 * 109.47302 * 59.99802 * 15 14 12 43 43 H 1.09007 * 109.46917 * 300.00336 * 15 14 12 44 44 H 0.97001 * 120.00384 * 335.00737 * 18 16 15 45 45 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 46 46 H 1.09009 * 109.47238 * 59.99946 * 27 16 15 47 47 H 1.09001 * 109.46678 * 59.99591 * 28 27 16 48 48 H 1.08997 * 109.47244 * 180.02562 * 28 27 16 49 49 H 1.09007 * 109.46677 * 300.00047 * 28 27 16 50 50 H 1.08997 * 109.47066 * 59.99753 * 29 27 16 51 51 H 1.09000 * 109.47191 * 180.02562 * 29 27 16 52 52 H 1.08995 * 109.46928 * 299.99922 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3062 1.2009 -0.1295 5 6 4.6857 1.1940 -0.1345 6 6 5.3751 0.0013 -0.0058 7 6 4.6870 -1.1910 0.1292 8 6 3.3071 -1.1979 0.1356 9 6 2.5590 -2.4977 0.2833 10 6 2.1964 -3.0265 -1.0805 11 8 2.5138 -2.4083 -2.0745 12 7 1.5195 -4.1861 -1.1956 13 6 1.1366 -4.9331 0.0052 14 6 1.1674 -4.7004 -2.5214 15 6 2.2920 -5.6024 -3.0337 16 6 1.9246 -6.1389 -4.4186 17 1 1.6994 -5.3050 -5.0835 18 7 0.7502 -7.0078 -4.3099 19 6 -0.0703 -7.1886 -5.3913 20 1 0.1510 -6.6942 -6.3256 21 6 -1.1863 -8.0073 -5.2866 22 7 -1.4563 -8.6095 -4.1478 23 14 -2.3051 -8.2545 -6.7620 24 1 -1.7855 -7.4739 -7.9134 25 1 -2.3432 -9.6956 -7.1184 26 1 -3.6756 -7.7910 -6.4271 27 6 3.1000 -6.9387 -4.9841 28 6 2.7324 -7.4758 -6.3687 29 6 4.3267 -6.0313 -5.0976 30 1 -1.0500 -0.0010 -0.0004 31 1 2.7693 2.1325 -0.2305 32 1 5.2287 2.1217 -0.2388 33 1 6.4551 0.0013 -0.0098 34 1 5.2309 -2.1187 0.2288 35 1 1.6503 -2.3303 0.8616 36 1 3.1890 -3.2230 0.7985 37 1 1.9302 -5.6334 0.2659 38 1 0.9792 -4.2386 0.8304 39 1 0.2155 -5.4831 -0.1874 40 1 1.0285 -3.8664 -3.2094 41 1 0.2432 -5.2744 -2.4549 42 1 2.4310 -6.4363 -2.3457 43 1 3.2164 -5.0284 -3.1003 44 1 0.5513 -7.4519 -3.4707 45 1 -2.2359 -9.1819 -4.0747 46 1 3.3254 -7.7727 -4.3193 47 1 2.5068 -6.6421 -7.0337 48 1 3.5697 -8.0459 -6.7713 49 1 1.8586 -8.1224 -6.2874 50 1 4.5884 -5.6490 -4.1110 51 1 5.1639 -6.6009 -5.5009 52 1 4.1014 -5.1973 -5.7623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717516688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:27 Heat of formation + Delta-G solvation = 43.328039 kcal Electronic energy + Delta-G solvation = -29830.146160 eV Core-core repulsion = 25989.060187 eV Total energy + Delta-G solvation = -3841.085973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.28468 -39.02681 -37.30045 -35.35220 -34.09547 -33.02619 -32.95173 -31.39810 -30.38615 -29.70325 -27.95394 -26.88142 -26.11326 -24.96255 -23.48766 -23.08423 -22.00991 -21.01287 -19.31635 -19.09065 -18.67148 -17.15279 -16.98282 -16.54161 -16.05432 -15.80957 -15.19478 -15.03002 -14.96194 -14.01009 -13.88760 -13.83466 -13.61863 -13.58743 -13.36221 -13.13070 -13.04740 -12.81402 -12.60521 -12.22836 -12.18383 -11.91867 -11.69027 -11.58892 -11.54075 -11.41823 -11.28736 -11.13226 -10.90777 -10.75477 -10.55781 -10.43550 -10.22531 -10.18589 -9.99367 -9.87990 -9.64492 -9.40740 -8.99081 -8.85531 -8.61705 -8.42224 -6.90642 -5.75252 -3.01624 0.77733 1.16125 2.61682 2.76543 2.88069 3.18171 3.43536 3.50834 3.51730 3.82989 4.13568 4.45591 4.61425 4.61907 4.71213 4.81787 4.99124 5.11681 5.20825 5.25766 5.36990 5.40083 5.46689 5.48888 5.53546 5.56998 5.68958 5.72572 5.74818 5.81494 5.89954 5.91680 6.02483 6.18062 6.18949 6.21562 6.26360 6.27085 6.34310 6.35255 6.47752 6.50424 6.61400 6.72638 6.74456 6.81161 6.87810 6.92316 7.21517 7.37494 7.40482 7.55316 7.75395 8.33192 8.44001 9.55384 10.13209 10.48900 11.47560 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002595 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.146562 B =10786.091931 C =11775.059100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 C 0.024 3.976 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.039 4.039 9 C -0.105 4.105 10 C 0.514 3.486 11 O -0.530 6.530 12 N -0.614 5.614 13 C 0.075 3.925 14 C 0.120 3.880 15 C -0.134 4.134 16 C 0.185 3.815 17 H 0.048 0.952 18 N -0.722 5.722 19 C -0.225 4.225 20 H 0.072 0.928 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.900 3.100 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.109 4.109 28 C -0.140 4.140 29 C -0.146 4.146 30 H 0.223 0.777 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.382 0.618 45 H 0.253 0.747 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.028 0.972 49 H 0.085 0.915 50 H 0.049 0.951 51 H 0.041 0.959 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 15.166 13.763 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.024 3.976 4 C -0.115 4.115 5 C -0.139 4.139 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.040 4.040 9 C -0.145 4.145 10 C 0.301 3.699 11 O -0.406 6.406 12 N -0.347 5.347 13 C -0.068 4.068 14 C -0.001 4.001 15 C -0.174 4.174 16 C 0.074 3.926 17 H 0.066 0.934 18 N -0.363 5.363 19 C -0.357 4.357 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.731 3.269 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.131 4.131 28 C -0.197 4.197 29 C -0.203 4.203 30 H 0.240 0.760 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.215 0.785 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.104 0.896 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.259 15.498 13.057 23.183 hybrid contribution -0.933 -0.547 -0.526 1.202 sum 10.325 14.951 12.532 22.073 Atomic orbital electron populations 1.24899 0.95786 0.99339 0.99271 1.19957 0.92013 1.01250 1.01365 1.15775 0.86545 0.93340 1.01984 1.21144 0.94252 0.96835 0.99239 1.21043 0.93824 0.98365 1.00717 1.21206 1.00043 0.92377 0.99134 1.20927 0.92939 0.98516 1.00081 1.19372 0.93440 0.92711 0.98460 1.20750 1.01793 0.95330 0.96626 1.20317 0.78133 0.80650 0.90803 1.90720 1.53099 1.57671 1.39091 1.47979 1.56227 1.22325 1.08146 1.21841 1.01449 0.96542 0.86961 1.21594 0.98703 0.97941 0.81871 1.22195 0.98241 0.98645 0.98286 1.20217 0.87305 0.92310 0.92764 0.93444 1.42464 1.25811 1.54860 1.13122 1.19276 1.02511 1.22339 0.91542 0.91028 1.24685 0.98923 1.00649 0.96883 1.69659 1.29216 1.35462 1.23995 0.86214 0.80912 0.77408 0.82320 1.20587 1.22048 1.22046 1.21741 0.95339 0.98172 0.97828 1.21831 1.01520 1.00837 0.95519 1.21917 0.97947 0.99652 1.00829 0.75978 0.85701 0.85618 0.85686 0.85599 0.88066 0.87915 0.92537 0.91571 0.90271 0.90423 0.89112 0.92424 0.91808 0.78455 0.93754 0.92382 0.94141 0.95263 0.89613 0.93227 0.93954 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.15 -1.85 11.79 -38.84 -0.46 -2.31 16 3 C 0.02 0.30 5.72 -107.00 -0.61 -0.32 16 4 C -0.10 -1.03 9.75 -39.19 -0.38 -1.42 16 5 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 6 C -0.11 -1.01 10.04 -39.50 -0.40 -1.40 16 7 C -0.11 -1.11 9.67 -39.64 -0.38 -1.49 16 8 C -0.04 -0.47 4.40 -104.24 -0.46 -0.93 16 9 C -0.11 -1.16 3.89 -29.04 -0.11 -1.27 16 10 C 0.51 7.61 7.66 -10.99 -0.08 7.52 16 11 O -0.53 -9.96 15.61 5.56 0.09 -9.88 16 12 N -0.61 -8.68 2.87 -181.57 -0.52 -9.20 16 13 C 0.08 0.79 10.28 59.85 0.62 1.41 16 14 C 0.12 2.05 5.34 -4.04 -0.02 2.03 16 15 C -0.13 -2.30 4.86 -26.73 -0.13 -2.43 16 16 C 0.18 3.63 2.02 -67.93 -0.14 3.50 16 17 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 18 N -0.72 -16.97 4.45 -53.43 -0.24 -17.21 16 19 C -0.23 -5.93 7.58 -15.06 -0.11 -6.04 16 20 H 0.07 1.88 7.41 -52.49 -0.39 1.49 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 23 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 C -0.11 -2.00 2.69 -90.62 -0.24 -2.24 16 28 C -0.14 -2.69 8.27 37.16 0.31 -2.38 16 29 C -0.15 -2.28 8.85 37.16 0.33 -1.95 16 30 H 0.22 1.62 7.80 -54.09 -0.42 1.20 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.10 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 39 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 40 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 41 H 0.09 1.67 7.51 -51.93 -0.39 1.29 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.09 6.17 -51.93 -0.32 0.76 16 44 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 1.91 6.02 -51.92 -0.31 1.60 16 50 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 51 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 425.45 15.07 6.41 6.41 Total: -1.00 -32.46 425.45 -9.34 -41.80 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.57 Total: 10.55 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.21 Total: -13.13 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.03 Total: -52.84 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -32.46 -9.34 -41.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717516688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.125 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds