Wall clock time and date at job start Wed Apr 1 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39561 * 120.14316 * 173.83875 * 3 2 1 5 5 C 1.37949 * 119.85672 * 180.27505 * 4 3 2 6 6 C 1.38360 * 120.14491 * 359.72775 * 5 4 3 7 7 C 1.38326 * 120.28400 * 359.97438 * 6 5 4 8 8 C 1.37991 * 120.14422 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.07609 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47365 * 265.00474 * 9 8 7 11 11 O 1.21282 * 119.99442 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00079 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00063 * 359.97438 * 12 10 9 14 14 C 1.46503 * 120.00160 * 180.02562 * 12 10 9 15 15 C 1.52997 * 109.47297 * 89.99879 * 14 12 10 16 16 C 1.52999 * 109.47080 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.47434 * 54.99895 * 16 15 14 18 18 N 1.46498 * 109.46963 * 294.99494 * 16 15 14 19 19 C 1.36943 * 119.99752 * 154.72381 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.52997 * 109.47114 * 174.99701 * 16 15 14 28 28 C 1.53003 * 109.47435 * 179.97438 * 27 16 15 29 29 C 1.53003 * 109.47241 * 300.00025 * 27 16 15 30 30 H 4.52081 * 14.02107 * 359.97438 * 4 2 1 31 31 H 1.08000 * 120.07114 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.92800 * 179.74679 * 5 4 3 33 33 H 1.08003 * 119.86132 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.92600 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47006 * 144.99890 * 9 8 7 36 36 H 1.09005 * 109.46742 * 25.00597 * 9 8 7 37 37 H 1.09005 * 109.47177 * 269.99953 * 13 12 10 38 38 H 1.09000 * 109.47271 * 30.00397 * 13 12 10 39 39 H 1.08998 * 109.47275 * 150.00022 * 13 12 10 40 40 H 1.09002 * 109.46404 * 329.99577 * 14 12 10 41 41 H 1.08998 * 109.47180 * 209.99833 * 14 12 10 42 42 H 1.08997 * 109.47302 * 59.99802 * 15 14 12 43 43 H 1.09007 * 109.46917 * 300.00336 * 15 14 12 44 44 H 0.97001 * 120.00384 * 335.00737 * 18 16 15 45 45 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 46 46 H 1.09009 * 109.47238 * 59.99946 * 27 16 15 47 47 H 1.09001 * 109.46678 * 59.99591 * 28 27 16 48 48 H 1.08997 * 109.47244 * 180.02562 * 28 27 16 49 49 H 1.09007 * 109.46677 * 300.00047 * 28 27 16 50 50 H 1.08997 * 109.47066 * 59.99753 * 29 27 16 51 51 H 1.09000 * 109.47191 * 180.02562 * 29 27 16 52 52 H 1.08995 * 109.46928 * 299.99922 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3062 1.2009 -0.1295 5 6 4.6857 1.1940 -0.1345 6 6 5.3751 0.0013 -0.0058 7 6 4.6870 -1.1910 0.1292 8 6 3.3071 -1.1979 0.1356 9 6 2.5590 -2.4977 0.2833 10 6 2.1964 -3.0265 -1.0805 11 8 2.5138 -2.4083 -2.0745 12 7 1.5195 -4.1861 -1.1956 13 6 1.1366 -4.9331 0.0052 14 6 1.1674 -4.7004 -2.5214 15 6 2.2920 -5.6024 -3.0337 16 6 1.9246 -6.1389 -4.4186 17 1 1.6994 -5.3050 -5.0835 18 7 0.7502 -7.0078 -4.3099 19 6 -0.0703 -7.1886 -5.3913 20 1 0.1510 -6.6942 -6.3256 21 6 -1.1863 -8.0073 -5.2866 22 7 -1.4563 -8.6095 -4.1478 23 14 -2.3051 -8.2545 -6.7620 24 1 -1.7855 -7.4739 -7.9134 25 1 -2.3432 -9.6956 -7.1184 26 1 -3.6756 -7.7910 -6.4271 27 6 3.1000 -6.9387 -4.9841 28 6 2.7324 -7.4758 -6.3687 29 6 4.3267 -6.0313 -5.0976 30 1 -1.0500 -0.0010 -0.0004 31 1 2.7693 2.1325 -0.2305 32 1 5.2287 2.1217 -0.2388 33 1 6.4551 0.0013 -0.0098 34 1 5.2309 -2.1187 0.2288 35 1 1.6503 -2.3303 0.8616 36 1 3.1890 -3.2230 0.7985 37 1 1.9302 -5.6334 0.2659 38 1 0.9792 -4.2386 0.8304 39 1 0.2155 -5.4831 -0.1874 40 1 1.0285 -3.8664 -3.2094 41 1 0.2432 -5.2744 -2.4549 42 1 2.4310 -6.4363 -2.3457 43 1 3.2164 -5.0284 -3.1003 44 1 0.5513 -7.4519 -3.4707 45 1 -2.2359 -9.1819 -4.0747 46 1 3.3254 -7.7727 -4.3193 47 1 2.5068 -6.6421 -7.0337 48 1 3.5697 -8.0459 -6.7713 49 1 1.8586 -8.1224 -6.2874 50 1 4.5884 -5.6490 -4.1110 51 1 5.1639 -6.6009 -5.5009 52 1 4.1014 -5.1973 -5.7623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717516688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:26 Heat of formation + Delta-G solvation = 26.831203 kcal Electronic energy + Delta-G solvation = -29830.861516 eV Core-core repulsion = 25989.060187 eV Total energy + Delta-G solvation = -3841.801329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.29376 -39.96697 -38.86266 -36.59116 -34.93924 -34.89217 -33.86376 -32.83706 -31.47345 -31.13187 -28.95789 -28.02802 -27.49012 -26.45286 -24.85618 -24.21371 -23.09245 -22.27269 -20.79961 -20.20108 -19.55847 -19.12701 -18.09451 -17.41126 -17.00440 -16.82043 -16.78394 -16.07169 -16.00290 -15.74045 -15.28880 -15.20473 -14.98671 -14.61565 -14.55894 -14.17239 -14.07609 -13.96483 -13.73419 -13.55321 -13.22099 -13.18921 -12.98593 -12.91843 -12.88072 -12.73022 -12.51639 -12.37256 -12.20328 -12.16667 -12.09895 -11.98401 -11.72384 -11.69707 -11.41915 -11.37955 -11.21188 -10.90261 -10.78935 -9.76466 -9.64178 -9.40054 -8.89187 -7.87590 -5.11993 -0.00255 0.40378 1.46444 1.48602 1.56381 1.64781 1.75279 2.03883 2.11754 2.59524 3.00860 3.37890 3.45179 3.62628 3.75850 3.89152 3.92729 3.96606 4.15001 4.20911 4.23943 4.27267 4.34061 4.42218 4.47464 4.52130 4.54837 4.65186 4.68544 4.71363 4.75052 4.75598 4.78538 4.91070 4.93555 5.03268 5.07627 5.11085 5.16773 5.18476 5.20111 5.34068 5.41082 5.48388 5.54303 5.56926 5.57890 5.59499 5.67003 5.75635 6.02547 6.35146 6.44983 6.56022 7.20023 7.42454 8.16486 8.42736 9.35876 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002595 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.146562 B =10786.091931 C =11775.059100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C -0.005 4.005 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.061 4.061 9 C -0.095 4.095 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.613 5.613 13 C 0.070 3.930 14 C 0.131 3.869 15 C -0.117 4.117 16 C 0.184 3.816 17 H 0.029 0.971 18 N -0.726 5.726 19 C -0.211 4.211 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.297 1.297 26 H -0.297 1.297 27 C -0.105 4.105 28 C -0.136 4.136 29 C -0.137 4.137 30 H 0.252 0.748 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.374 0.626 45 H 0.247 0.753 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.148 15.792 14.661 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.183 4.183 3 C -0.006 4.006 4 C -0.130 4.130 5 C -0.139 4.139 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.062 4.062 9 C -0.134 4.134 10 C 0.300 3.700 11 O -0.456 6.456 12 N -0.346 5.346 13 C -0.072 4.072 14 C 0.008 3.992 15 C -0.157 4.157 16 C 0.075 3.925 17 H 0.048 0.952 18 N -0.365 5.365 19 C -0.343 4.343 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.786 3.214 24 H -0.196 1.196 25 H -0.225 1.225 26 H -0.225 1.225 27 C -0.126 4.126 28 C -0.193 4.193 29 C -0.194 4.194 30 H 0.268 0.732 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.231 16.138 13.967 25.111 hybrid contribution -1.475 -0.658 -0.812 1.808 sum 11.755 15.480 13.156 23.471 Atomic orbital electron populations 1.25680 0.96598 0.98160 0.98300 1.20484 0.92866 1.02463 1.02457 1.16122 0.86865 0.94412 1.03153 1.21406 0.95247 0.96799 0.99551 1.21416 0.93351 0.99718 0.99449 1.21603 1.01536 0.91915 0.97921 1.21249 0.92596 0.99849 0.99761 1.19583 0.94299 0.92780 0.99498 1.20748 1.02813 0.95682 0.94186 1.20997 0.77147 0.79998 0.91839 1.90691 1.55024 1.58911 1.40968 1.48027 1.55944 1.22606 1.07974 1.22089 1.01685 0.97285 0.86161 1.21223 0.97979 0.96593 0.83366 1.22007 0.98272 0.98677 0.96700 1.20345 0.86690 0.91309 0.94199 0.95248 1.42542 1.26774 1.55167 1.12053 1.19467 1.02198 1.20730 0.91937 0.91268 1.25295 1.00636 1.01580 0.99019 1.69781 1.29717 1.36737 1.25539 0.85334 0.79051 0.76916 0.80147 1.19644 1.22452 1.22509 1.21631 0.95732 0.98276 0.97007 1.21749 1.00935 1.00357 0.96266 1.21818 0.96989 0.99107 1.01530 0.73221 0.84907 0.82912 0.82910 0.83921 0.87025 0.84848 0.90757 0.88624 0.91051 0.93120 0.90971 0.91642 0.91147 0.79355 0.94380 0.92672 0.94331 0.92950 0.93088 0.92342 0.91975 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 19.25 74.32 1.43 -2.23 16 2 C -0.18 -4.66 11.79 30.01 0.35 -4.31 16 3 C -0.01 -0.14 5.72 -21.41 -0.12 -0.26 16 4 C -0.11 -2.35 9.75 22.52 0.22 -2.13 16 5 C -0.12 -2.02 10.03 22.23 0.22 -1.80 16 6 C -0.11 -1.81 10.04 22.32 0.22 -1.59 16 7 C -0.12 -2.23 9.67 22.23 0.21 -2.01 16 8 C -0.06 -1.41 4.40 -19.61 -0.09 -1.49 16 9 C -0.10 -1.94 3.89 29.10 0.11 -1.83 16 10 C 0.51 14.80 7.66 87.66 0.67 15.47 16 11 O -0.58 -21.94 15.61 -3.04 -0.05 -21.99 16 12 N -0.61 -16.95 2.87 -846.75 -2.43 -19.39 16 13 C 0.07 1.34 10.28 127.77 1.31 2.65 16 14 C 0.13 4.56 5.34 86.38 0.46 5.02 16 15 C -0.12 -3.97 4.86 30.59 0.15 -3.82 16 16 C 0.18 7.25 2.02 44.99 0.09 7.34 16 17 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 18 N -0.73 -34.69 4.45 -322.94 -1.44 -36.13 16 19 C -0.21 -11.28 7.58 84.03 0.64 -10.64 16 20 H 0.07 3.68 7.41 -2.91 -0.02 3.66 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 22 N -0.97 -57.24 13.06 21.65 0.28 -56.95 16 23 Si 0.95 46.14 29.55 68.60 2.03 48.17 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 27 C -0.11 -3.74 2.69 -10.79 -0.03 -3.77 16 28 C -0.14 -5.11 8.27 71.98 0.60 -4.51 16 29 C -0.14 -3.97 8.85 71.98 0.64 -3.33 16 30 H 0.25 3.34 7.80 -4.42 -0.03 3.30 16 31 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.11 2.02 6.55 -2.39 -0.02 2.00 16 36 H 0.13 1.83 8.02 -2.38 -0.02 1.81 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.28 6.44 -2.39 -0.02 1.26 16 39 H 0.07 1.50 7.89 -2.39 -0.02 1.49 16 40 H 0.05 2.02 7.42 -2.39 -0.02 2.00 16 41 H 0.07 2.76 7.51 -2.39 -0.02 2.74 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.32 6.17 -2.38 -0.01 2.30 16 44 H 0.37 19.06 7.80 -92.71 -0.72 18.33 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.05 2.27 6.02 -2.38 -0.01 2.26 16 50 H 0.06 1.60 6.32 -2.39 -0.02 1.58 16 51 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.31 425.45 6.13 -66.18 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.17 Total: 36.98 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 7.56 Total: -16.88 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -3.59 Total: -112.47 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.31 6.13 -66.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717516688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.015 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds