Wall clock time and date at job start Wed Apr 1 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46507 * 119.99684 * 90.00564 * 8 7 6 10 10 C 1.34775 * 120.00627 * 270.00542 * 8 7 6 11 11 O 1.21279 * 119.99415 * 359.97438 * 10 8 7 12 12 C 1.50696 * 120.00387 * 179.97438 * 10 8 7 13 13 C 1.47201 * 109.47279 * 179.97438 * 12 10 8 14 14 C 8.41974 * 147.20642 * 175.84654 * 2 1 3 15 15 C 9.44720 * 143.10486 * 184.49092 * 2 1 3 16 16 C 1.39539 * 120.13432 * 150.21036 * 15 14 13 17 17 C 1.37981 * 119.84765 * 179.78822 * 16 15 14 18 18 C 1.38336 * 120.14546 * 0.46640 * 17 16 15 19 19 C 1.38342 * 120.28627 * 359.78579 * 18 17 16 20 20 C 1.37975 * 120.14474 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 31 31 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 33 33 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 34 34 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 36 36 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 41 41 H 1.08994 * 109.46995 * 89.99917 * 9 8 7 42 42 H 1.08998 * 109.46745 * 210.00320 * 9 8 7 43 43 H 1.08999 * 109.46852 * 329.99885 * 9 8 7 44 44 H 1.08997 * 109.47231 * 300.00344 * 12 10 8 45 45 H 1.09012 * 109.46831 * 59.99900 * 12 10 8 46 46 H 1.08001 * 120.07615 * 0.02562 * 16 15 14 47 47 H 1.08001 * 119.92364 * 180.25585 * 17 16 15 48 48 H 1.07999 * 119.85678 * 179.76164 * 18 17 16 49 49 H 1.08006 * 119.93171 * 179.97438 * 19 18 17 50 50 H 1.07997 * 120.07338 * 179.97438 * 20 19 18 51 51 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 52 52 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 6 4.0800 -1.5492 2.4305 8 7 5.5450 -1.5502 2.4298 9 6 6.2785 -0.5112 3.1570 10 6 6.2180 -2.5069 1.7603 11 8 5.6107 -3.3672 1.1588 12 6 7.7250 -2.5075 1.7592 13 6 8.2146 -3.6453 0.9638 14 6 8.6078 -4.5483 0.3303 15 6 9.0852 -5.6542 -0.4441 16 6 10.1518 -5.4825 -1.3272 17 6 10.6099 -6.5532 -2.0673 18 6 10.0079 -7.7925 -1.9422 19 6 8.9467 -7.9680 -1.0723 20 6 8.4822 -6.9067 -0.3229 21 7 1.5518 -0.0307 2.4454 22 6 0.3079 -0.3170 2.9415 23 1 -0.3113 -1.0552 2.4535 24 6 -0.1571 0.3414 4.0716 25 7 0.5974 1.2414 4.6660 26 14 -1.8535 -0.0496 4.7487 27 1 -2.4954 -1.0898 3.9054 28 1 -1.7274 -0.5504 6.1411 29 1 -2.6862 1.1799 4.7384 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9330 -1.1564 0.3175 38 1 3.9337 0.3018 1.3382 39 1 3.7170 -1.1147 3.3618 40 1 3.7163 -2.5728 2.3412 41 1 6.4604 -0.8427 4.1793 42 1 7.2308 -0.3240 2.6608 43 1 5.6900 0.4062 3.1718 44 1 8.0884 -1.5765 1.3242 45 1 8.0890 -2.5968 2.7828 46 1 10.6203 -4.5147 -1.4285 47 1 11.4380 -6.4227 -2.7481 48 1 10.3677 -8.6264 -2.5265 49 1 8.4807 -8.9379 -0.9795 50 1 7.6534 -7.0449 0.3556 51 1 2.1078 0.6323 2.8837 52 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717517697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:30 Heat of formation + Delta-G solvation = 38.053099 kcal Electronic energy + Delta-G solvation = -28576.104272 eV Core-core repulsion = 24734.789561 eV Total energy + Delta-G solvation = -3841.314711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.89218 -39.37347 -37.43993 -35.49717 -34.52616 -32.82628 -32.16741 -31.25063 -31.14438 -29.58032 -28.43810 -26.93937 -26.28245 -25.06606 -23.35283 -22.97947 -22.79189 -21.40245 -19.37243 -18.61783 -18.30574 -17.23209 -17.05699 -16.57037 -16.00734 -15.83111 -15.25870 -15.01162 -14.61886 -14.26128 -14.00141 -13.86366 -13.77375 -13.74181 -13.44559 -13.36338 -13.17091 -13.00695 -12.67248 -12.53220 -12.44314 -12.06144 -11.73597 -11.57092 -11.49069 -11.28364 -11.06764 -11.03863 -10.87695 -10.73761 -10.47135 -10.34856 -10.33216 -10.14778 -9.98734 -9.81620 -9.59763 -9.38334 -9.27364 -8.87647 -8.68947 -8.48529 -6.90915 -5.75794 -3.01710 0.66815 1.08840 2.37898 2.60198 2.74956 3.20057 3.43240 3.50754 3.51444 3.74648 3.87031 4.55808 4.61171 4.64916 4.66107 4.79000 4.99765 5.01292 5.10137 5.16087 5.23938 5.28102 5.33695 5.46717 5.51112 5.57059 5.69434 5.71576 5.73649 5.77365 5.79629 5.92423 6.04830 6.10615 6.11615 6.17749 6.18802 6.22899 6.38032 6.39283 6.46457 6.57362 6.63606 6.67685 6.78502 6.82045 6.93134 6.95656 7.14083 7.35699 7.41772 7.50458 7.75161 8.21900 8.43418 9.55064 10.12583 10.48513 11.46912 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.001877 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.374184 B =14914.493274 C =15111.919621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.182 3.818 5 H 0.048 0.952 6 C -0.133 4.133 7 C 0.119 3.881 8 N -0.612 5.612 9 C 0.073 3.927 10 C 0.511 3.489 11 O -0.531 6.531 12 C -0.026 4.026 13 C -0.132 4.132 14 C -0.136 4.136 15 C 0.023 3.977 16 C -0.100 4.100 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.094 4.094 21 N -0.718 5.718 22 C -0.225 4.225 23 H 0.072 0.928 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.900 3.100 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.124 0.876 49 H 0.127 0.873 50 H 0.128 0.872 51 H 0.382 0.618 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.418 -9.480 -9.338 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.194 4.194 4 C 0.071 3.929 5 H 0.066 0.934 6 C -0.172 4.172 7 C -0.002 4.002 8 N -0.345 5.345 9 C -0.070 4.070 10 C 0.298 3.702 11 O -0.407 6.407 12 C -0.065 4.065 13 C -0.132 4.132 14 C -0.136 4.136 15 C 0.023 3.977 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.112 4.112 21 N -0.359 5.359 22 C -0.356 4.356 23 H 0.090 0.910 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.146 0.854 51 H 0.216 0.784 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.906 -10.014 -9.595 25.088 hybrid contribution -0.812 0.276 0.593 1.042 sum 20.094 -9.738 -9.002 24.076 Atomic orbital electron populations 1.21851 0.95415 1.00748 1.01835 1.21670 0.96473 0.96478 0.98441 1.21735 0.99373 0.96949 1.01335 1.20221 0.89884 0.95297 0.87459 0.93422 1.22157 0.97540 0.99767 0.97737 1.21619 0.76303 1.01892 1.00407 1.47979 1.07951 1.27720 1.50860 1.21876 0.96930 0.91831 0.96358 1.20254 0.89030 0.81626 0.79302 1.90737 1.69921 1.37117 1.42892 1.18706 0.93187 0.94408 1.00159 1.21132 0.98474 0.95855 0.97779 1.18895 1.00715 0.95170 0.98797 1.15903 0.96196 0.89781 0.95848 1.21234 0.95732 0.99323 0.95462 1.21076 1.00299 0.92817 0.99706 1.21271 0.96217 0.97447 0.98427 1.21117 0.97100 0.98891 0.96594 1.21313 0.99267 0.91543 0.99085 1.42420 1.17692 1.47494 1.28313 1.19274 0.92588 1.17199 1.06558 0.91035 1.24673 0.98235 0.99548 0.98691 1.69654 1.36709 1.29388 1.22548 0.86216 0.84568 0.77338 0.78728 1.20628 1.22095 1.22096 0.95294 0.94223 0.89439 0.93701 0.94024 0.94706 0.91348 0.92359 0.91928 0.88856 0.90286 0.92283 0.91356 0.90129 0.86479 0.86481 0.85646 0.85591 0.85807 0.85489 0.85378 0.78413 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.25 37.16 0.31 -2.39 16 2 C -0.11 -1.98 2.80 -90.62 -0.25 -2.24 16 3 C -0.14 -2.36 8.68 37.16 0.32 -2.04 16 4 C 0.18 3.51 2.19 -67.93 -0.15 3.37 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 C -0.13 -2.21 4.58 -26.73 -0.12 -2.33 16 7 C 0.12 1.95 5.29 -4.04 -0.02 1.92 16 8 N -0.61 -8.12 2.87 -181.58 -0.52 -8.65 16 9 C 0.07 0.68 10.24 59.85 0.61 1.29 16 10 C 0.51 7.26 7.66 -10.99 -0.08 7.18 16 11 O -0.53 -9.95 15.61 5.56 0.09 -9.86 16 12 C -0.03 -0.26 4.74 -30.67 -0.15 -0.40 16 13 C -0.13 -1.70 12.56 -37.16 -0.47 -2.16 16 14 C -0.14 -1.80 13.22 -38.87 -0.51 -2.31 16 15 C 0.02 0.26 5.72 -107.00 -0.61 -0.35 16 16 C -0.10 -0.94 9.75 -39.19 -0.38 -1.32 16 17 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 18 C -0.12 -0.87 10.04 -39.51 -0.40 -1.26 16 19 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 20 C -0.09 -1.00 9.75 -39.20 -0.38 -1.38 16 21 N -0.72 -16.33 3.69 -53.43 -0.20 -16.53 16 22 C -0.22 -5.80 7.55 -15.06 -0.11 -5.92 16 23 H 0.07 1.85 7.38 -52.49 -0.39 1.46 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -26.73 13.06 55.49 0.72 -26.00 16 26 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.93 5.99 -51.93 -0.31 1.62 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.35 7.60 -51.93 -0.39 0.96 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.01 6.71 -51.93 -0.35 0.66 16 39 H 0.09 1.65 7.68 -51.94 -0.40 1.25 16 40 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 43 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.12 0.84 7.40 -51.93 -0.38 0.45 16 45 H 0.12 0.85 8.11 -51.92 -0.42 0.43 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 50 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 51 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 52 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 427.40 15.07 6.44 6.44 Total: -1.00 -32.22 427.40 -10.43 -42.65 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.65 Total: 8.65 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.29 Total: -13.62 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.01 Total: -51.18 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -32.22 -10.43 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717517697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.705 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds