Wall clock time and date at job start Wed Apr 1 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.46507 * 119.99684 * 90.00564 * 8 7 6 10 10 C 1.34775 * 120.00627 * 270.00542 * 8 7 6 11 11 O 1.21279 * 119.99415 * 359.97438 * 10 8 7 12 12 C 1.50696 * 120.00387 * 179.97438 * 10 8 7 13 13 C 1.47201 * 109.47279 * 179.97438 * 12 10 8 14 14 C 8.41974 * 147.20642 * 175.84654 * 2 1 3 15 15 C 9.44720 * 143.10486 * 184.49092 * 2 1 3 16 16 C 1.39539 * 120.13432 * 150.21036 * 15 14 13 17 17 C 1.37981 * 119.84765 * 179.78822 * 16 15 14 18 18 C 1.38336 * 120.14546 * 0.46640 * 17 16 15 19 19 C 1.38342 * 120.28627 * 359.78579 * 18 17 16 20 20 C 1.37975 * 120.14474 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 31 31 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 33 33 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 34 34 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 36 36 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 41 41 H 1.08994 * 109.46995 * 89.99917 * 9 8 7 42 42 H 1.08998 * 109.46745 * 210.00320 * 9 8 7 43 43 H 1.08999 * 109.46852 * 329.99885 * 9 8 7 44 44 H 1.08997 * 109.47231 * 300.00344 * 12 10 8 45 45 H 1.09012 * 109.46831 * 59.99900 * 12 10 8 46 46 H 1.08001 * 120.07615 * 0.02562 * 16 15 14 47 47 H 1.08001 * 119.92364 * 180.25585 * 17 16 15 48 48 H 1.07999 * 119.85678 * 179.76164 * 18 17 16 49 49 H 1.08006 * 119.93171 * 179.97438 * 19 18 17 50 50 H 1.07997 * 120.07338 * 179.97438 * 20 19 18 51 51 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 52 52 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 6 4.0800 -1.5492 2.4305 8 7 5.5450 -1.5502 2.4298 9 6 6.2785 -0.5112 3.1570 10 6 6.2180 -2.5069 1.7603 11 8 5.6107 -3.3672 1.1588 12 6 7.7250 -2.5075 1.7592 13 6 8.2146 -3.6453 0.9638 14 6 8.6078 -4.5483 0.3303 15 6 9.0852 -5.6542 -0.4441 16 6 10.1518 -5.4825 -1.3272 17 6 10.6099 -6.5532 -2.0673 18 6 10.0079 -7.7925 -1.9422 19 6 8.9467 -7.9680 -1.0723 20 6 8.4822 -6.9067 -0.3229 21 7 1.5518 -0.0307 2.4454 22 6 0.3079 -0.3170 2.9415 23 1 -0.3113 -1.0552 2.4535 24 6 -0.1571 0.3414 4.0716 25 7 0.5974 1.2414 4.6660 26 14 -1.8535 -0.0496 4.7487 27 1 -2.4954 -1.0898 3.9054 28 1 -1.7274 -0.5504 6.1411 29 1 -2.6862 1.1799 4.7384 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9330 -1.1564 0.3175 38 1 3.9337 0.3018 1.3382 39 1 3.7170 -1.1147 3.3618 40 1 3.7163 -2.5728 2.3412 41 1 6.4604 -0.8427 4.1793 42 1 7.2308 -0.3240 2.6608 43 1 5.6900 0.4062 3.1718 44 1 8.0884 -1.5765 1.3242 45 1 8.0890 -2.5968 2.7828 46 1 10.6203 -4.5147 -1.4285 47 1 11.4380 -6.4227 -2.7481 48 1 10.3677 -8.6264 -2.5265 49 1 8.4807 -8.9379 -0.9795 50 1 7.6534 -7.0449 0.3556 51 1 2.1078 0.6323 2.8837 52 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717517697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:29 Heat of formation + Delta-G solvation = 22.068910 kcal Electronic energy + Delta-G solvation = -28576.797399 eV Core-core repulsion = 24734.789561 eV Total energy + Delta-G solvation = -3842.007838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02813 -40.04484 -39.01109 -36.68965 -35.41518 -34.74590 -33.24520 -32.31809 -31.90706 -31.26217 -29.41249 -28.10496 -27.62345 -26.49752 -25.03649 -23.90099 -23.45025 -22.79390 -20.49492 -20.17570 -19.16994 -19.07670 -18.15571 -17.44683 -16.98428 -16.78547 -16.58296 -16.03409 -15.96825 -15.58486 -15.39883 -15.26366 -14.74288 -14.61197 -14.56599 -14.39811 -14.36781 -14.09510 -13.93839 -13.83173 -13.60724 -13.13697 -12.95340 -12.88216 -12.77791 -12.72275 -12.38119 -12.35129 -12.24143 -12.12713 -12.03204 -11.89427 -11.82243 -11.70814 -11.29518 -11.21596 -11.17155 -10.84627 -10.73811 -9.94173 -9.65773 -9.43459 -8.86134 -7.85475 -5.08593 -0.06725 0.42175 1.42384 1.46953 1.49697 1.56809 1.57179 1.85342 2.22723 2.60981 2.98326 3.06398 3.47657 3.64471 3.93650 3.99715 4.01506 4.04155 4.18284 4.21368 4.25093 4.30738 4.35720 4.39977 4.45954 4.48774 4.49548 4.54498 4.62900 4.65676 4.74637 4.79119 4.90056 4.96383 5.01046 5.04154 5.06311 5.08184 5.11213 5.19640 5.28355 5.38822 5.43495 5.45901 5.52313 5.53650 5.56035 5.60459 5.64967 5.81453 5.99952 6.36461 6.37764 6.53746 7.13651 7.45226 8.19393 8.46364 9.37732 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.001877 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.374184 B =14914.493274 C =15111.919621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C -0.128 4.128 4 C 0.180 3.820 5 H 0.029 0.971 6 C -0.116 4.116 7 C 0.129 3.871 8 N -0.609 5.609 9 C 0.065 3.935 10 C 0.506 3.494 11 O -0.587 6.587 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.012 4.012 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.117 4.117 21 N -0.717 5.717 22 C -0.209 4.209 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.964 5.964 26 Si 0.952 3.048 27 H -0.273 1.273 28 H -0.299 1.299 29 H -0.299 1.299 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.147 0.853 50 H 0.115 0.885 51 H 0.376 0.624 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.762 -9.638 -10.996 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.185 4.185 4 C 0.070 3.930 5 H 0.047 0.953 6 C -0.155 4.155 7 C 0.006 3.994 8 N -0.341 5.341 9 C -0.076 4.076 10 C 0.295 3.705 11 O -0.467 6.467 12 C -0.054 4.054 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.012 4.012 16 C -0.125 4.125 17 C -0.137 4.137 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.135 4.135 21 N -0.358 5.358 22 C -0.341 4.341 23 H 0.087 0.913 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.784 3.216 27 H -0.198 1.198 28 H -0.227 1.227 29 H -0.226 1.226 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.173 0.827 45 H 0.169 0.831 46 H 0.154 0.846 47 H 0.174 0.826 48 H 0.173 0.827 49 H 0.165 0.835 50 H 0.133 0.867 51 H 0.208 0.792 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 23.272 -10.170 -11.267 27.784 hybrid contribution -1.488 0.231 1.006 1.811 sum 21.784 -9.938 -10.261 26.050 Atomic orbital electron populations 1.21772 0.96114 1.00358 1.01212 1.21630 0.95872 0.97232 0.98162 1.21636 1.00379 0.95799 1.00709 1.20345 0.91744 0.94000 0.86874 0.95268 1.21960 0.95320 1.00361 0.97835 1.21253 0.78803 0.99936 0.99448 1.48013 1.06659 1.28557 1.50854 1.22191 0.98012 0.90226 0.97182 1.21015 0.90798 0.80589 0.78100 1.90714 1.71378 1.39271 1.45343 1.18874 0.89470 0.95021 1.01995 1.21846 0.98679 0.96554 0.98175 1.19605 1.01001 0.95908 0.99467 1.16204 0.97829 0.89829 0.97291 1.21452 0.95210 1.00586 0.95215 1.21474 1.00652 0.92272 0.99276 1.21694 0.95183 0.98387 0.97654 1.21404 0.97434 0.99034 0.96176 1.21388 0.99650 0.92329 1.00099 1.42436 1.16681 1.47381 1.29281 1.19461 0.93275 1.15709 1.05665 0.91347 1.25245 1.01062 1.00457 0.99720 1.69769 1.37949 1.30827 1.23036 0.85361 0.81543 0.76893 0.77790 1.19800 1.22672 1.22629 0.93129 0.94484 0.92752 0.91743 0.92355 0.92952 0.94266 0.92166 0.90790 0.90455 0.93039 0.90988 0.87353 0.90731 0.82748 0.83138 0.84620 0.82592 0.82672 0.83493 0.86671 0.79164 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.25 71.98 0.59 -4.55 16 2 C -0.11 -3.80 2.80 -10.80 -0.03 -3.83 16 3 C -0.13 -4.21 8.68 71.98 0.63 -3.58 16 4 C 0.18 6.97 2.19 44.99 0.10 7.07 16 5 H 0.03 1.24 8.08 -2.39 -0.02 1.23 16 6 C -0.12 -3.80 4.58 30.60 0.14 -3.66 16 7 C 0.13 4.28 5.29 86.38 0.46 4.73 16 8 N -0.61 -15.58 2.87 -846.77 -2.43 -18.02 16 9 C 0.07 1.05 10.24 127.77 1.31 2.35 16 10 C 0.51 14.03 7.66 87.66 0.67 14.70 16 11 O -0.59 -22.68 15.61 -3.03 -0.05 -22.72 16 12 C -0.02 -0.28 4.74 28.04 0.13 -0.14 16 13 C -0.15 -3.87 12.56 31.16 0.39 -3.48 16 14 C -0.16 -4.37 13.22 30.05 0.40 -3.97 16 15 C -0.01 -0.28 5.72 -21.41 -0.12 -0.40 16 16 C -0.11 -1.94 9.75 22.52 0.22 -1.72 16 17 C -0.12 -1.57 10.03 22.23 0.22 -1.35 16 18 C -0.11 -1.40 10.04 22.32 0.22 -1.18 16 19 C -0.12 -1.96 10.03 22.23 0.22 -1.74 16 20 C -0.12 -2.59 9.75 22.52 0.22 -2.37 16 21 N -0.72 -33.22 3.69 -322.94 -1.19 -34.41 16 22 C -0.21 -10.96 7.55 84.03 0.63 -10.33 16 23 H 0.07 3.59 7.38 -2.91 -0.02 3.57 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.96 -56.30 13.06 21.65 0.28 -56.02 16 26 Si 0.95 45.93 29.55 68.60 2.03 47.96 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 2.40 5.99 -2.39 -0.01 2.39 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.70 6.55 -2.39 -0.02 1.69 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.52 7.60 -2.39 -0.02 1.50 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.28 6.71 -2.39 -0.02 2.26 16 39 H 0.08 2.81 7.68 -2.39 -0.02 2.80 16 40 H 0.05 1.98 7.42 -2.39 -0.02 1.97 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.11 0.88 6.44 -2.39 -0.02 0.87 16 43 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 44 H 0.16 1.58 7.40 -2.39 -0.02 1.57 16 45 H 0.15 1.67 8.11 -2.38 -0.02 1.65 16 46 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 48 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 49 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 51 H 0.38 18.48 7.80 -92.71 -0.72 17.76 16 52 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -73.84 427.40 5.69 -68.15 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.18 Total: 32.07 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 6.87 Total: -17.00 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.34 Total: -108.45 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.84 5.69 -68.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717517697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.216 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds