Wall clock time and date at job start Wed Apr 1 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47078 * 2 1 4 4 H 1.09000 * 109.47064 * 54.89833 * 3 2 1 5 5 C 1.53003 * 109.46673 * 174.89850 * 3 2 1 6 6 C 1.50705 * 109.46804 * 186.02578 * 5 3 2 7 7 O 1.21280 * 119.99784 * 5.36484 * 6 5 3 8 8 N 1.34771 * 120.00386 * 185.36374 * 6 5 3 9 9 C 1.46493 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.47286 * 180.02562 * 9 8 6 11 11 H 1.08996 * 115.51542 * 330.58596 * 10 9 8 12 12 C 1.52997 * 117.44122 * 185.16497 * 10 9 8 13 13 H 1.08991 * 119.54142 * 4.16767 * 12 10 9 14 14 C 1.54396 * 118.11688 * 160.85220 * 12 10 9 15 15 N 1.47826 * 104.68789 * 87.25948 * 14 12 10 16 16 C 1.36943 * 127.86538 * 140.39448 * 15 14 12 17 17 H 1.07997 * 119.99673 * 351.73209 * 16 15 14 18 18 C 1.38810 * 120.00113 * 171.73592 * 16 15 14 19 19 N 1.31615 * 119.99880 * 350.87635 * 18 16 15 20 20 Si 1.86794 * 119.99910 * 170.88057 * 18 16 15 21 21 H 1.48499 * 109.47499 * 59.99572 * 20 18 16 22 22 H 1.48502 * 109.47357 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47263 * 299.99680 * 20 18 16 24 24 C 1.48143 * 104.29982 * 320.38612 * 15 14 12 25 25 C 1.52998 * 117.43955 * 115.99832 * 10 9 8 26 26 H 1.08998 * 119.54524 * 355.83837 * 25 10 9 27 27 C 1.50698 * 109.46905 * 294.89491 * 3 2 1 28 28 C 1.38227 * 120.00378 * 299.72266 * 27 3 2 29 29 C 1.38234 * 120.00119 * 179.81185 * 28 27 3 30 30 C 1.38242 * 119.99804 * 0.40118 * 29 28 27 31 31 C 1.38237 * 120.00030 * 359.85358 * 30 29 28 32 32 C 1.38232 * 119.99814 * 359.96036 * 31 30 29 33 33 H 1.08995 * 109.47341 * 178.20332 * 1 2 3 34 34 H 1.08998 * 109.47699 * 298.21185 * 1 2 3 35 35 H 1.09006 * 109.47124 * 58.21060 * 1 2 3 36 36 H 1.09000 * 109.47193 * 240.00562 * 2 1 3 37 37 H 1.08997 * 109.47196 * 120.00014 * 2 1 3 38 38 H 1.08999 * 109.47380 * 66.02831 * 5 3 2 39 39 H 1.09000 * 109.46950 * 306.01869 * 5 3 2 40 40 H 0.97004 * 119.99501 * 359.97438 * 8 6 5 41 41 H 1.09001 * 109.47466 * 60.00566 * 9 8 6 42 42 H 1.09004 * 109.47140 * 300.00271 * 9 8 6 43 43 H 1.09000 * 110.40725 * 205.97254 * 14 12 10 44 44 H 1.08993 * 110.41209 * 328.40754 * 14 12 10 45 45 H 0.97003 * 120.00125 * 180.02562 * 19 18 16 46 46 H 1.08997 * 110.41375 * 280.81131 * 24 15 14 47 47 H 1.09001 * 110.41187 * 158.37682 * 24 15 14 48 48 H 1.07998 * 120.00316 * 0.02562 * 28 27 3 49 49 H 1.08004 * 120.00444 * 180.23711 * 29 28 27 50 50 H 1.08004 * 119.99897 * 179.83724 * 30 29 28 51 51 H 1.07999 * 119.99704 * 179.97438 * 31 30 29 52 52 H 1.08000 * 119.99921 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6039 1.9821 0.8408 5 6 3.5646 1.4444 0.1283 6 6 4.0545 2.8618 0.2771 7 8 3.2583 3.7711 0.3780 8 7 5.3772 3.1190 0.2980 9 6 5.8534 4.4969 0.4421 10 6 7.3834 4.5111 0.4355 11 1 7.8629 3.6124 0.8232 12 6 8.0771 5.8494 0.6972 13 1 7.4783 6.7257 0.9452 14 6 9.5563 5.8281 1.1392 15 7 10.3247 5.8096 -0.1235 16 6 11.4840 6.4791 -0.4119 17 1 11.8693 7.2140 0.2793 18 6 12.1638 6.2131 -1.5926 19 7 11.7993 5.1985 -2.3475 20 14 13.5959 7.2951 -2.1098 21 1 14.6535 7.2478 -1.0684 22 1 14.1470 6.8043 -3.3984 23 1 13.1253 8.6940 -2.2741 24 6 9.5557 4.9021 -1.0065 25 6 8.0767 5.2387 -0.7181 26 1 7.4776 5.6595 -1.5256 27 6 1.6435 2.1155 -1.2888 28 6 2.0856 1.6100 -2.4970 29 6 1.7187 2.2250 -3.6793 30 6 0.9164 3.3505 -3.6530 31 6 0.4785 3.8591 -2.4445 32 6 0.8423 3.2418 -1.2624 33 1 -0.3634 -1.0271 -0.0322 34 1 -0.3634 0.4858 0.9055 35 1 -0.3634 0.5414 -0.8735 36 1 1.8933 -0.5137 -0.8900 37 1 1.8933 -0.5138 0.8899 38 1 4.0049 0.9996 -0.7642 39 1 3.8561 0.8654 1.0046 40 1 6.0140 2.3917 0.2176 41 1 5.4899 4.9104 1.3828 42 1 5.4812 5.0985 -0.3872 43 1 9.7942 6.7232 1.7139 44 1 9.7651 4.9328 1.7247 45 1 12.2745 5.0124 -3.1724 46 1 9.7644 3.8618 -0.7569 47 1 9.7930 5.0979 -2.0522 48 1 2.7149 0.7326 -2.5174 49 1 2.0610 1.8279 -4.6236 50 1 0.6319 3.8325 -4.5767 51 1 -0.1479 4.7386 -2.4240 52 1 0.5006 3.6393 -0.3182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717604736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:10 Heat of formation + Delta-G solvation = 30.618313 kcal Electronic energy + Delta-G solvation = -29156.143183 eV Core-core repulsion = 25314.506075 eV Total energy + Delta-G solvation = -3841.637108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.33507 -39.23428 -38.59340 -36.02393 -34.86748 -33.33455 -31.31529 -30.96664 -30.83796 -29.91100 -27.40166 -27.05914 -25.34056 -24.14606 -23.12381 -22.41446 -21.13534 -20.77380 -20.08077 -19.55198 -19.25171 -17.16970 -17.03627 -16.81085 -16.02493 -15.88321 -15.23292 -14.95596 -14.76062 -14.52952 -14.30475 -14.19197 -13.91223 -13.65471 -13.39842 -13.31961 -12.99406 -12.78285 -12.65457 -12.58070 -12.48735 -12.02804 -11.81155 -11.57392 -11.45630 -11.29655 -11.23683 -11.06701 -10.82466 -10.80788 -10.77298 -10.69783 -10.27376 -10.17544 -9.86930 -9.72010 -9.37906 -9.08908 -8.94775 -8.90181 -8.70423 -8.66125 -6.93055 -5.77208 -3.12258 1.30468 1.38345 2.68307 3.16739 3.38271 3.42971 3.44102 3.72883 4.16388 4.42042 4.45161 4.46492 4.63196 4.87103 4.91329 4.92817 4.95616 5.00853 5.04886 5.17930 5.23314 5.33643 5.36273 5.39776 5.43959 5.44332 5.51278 5.53592 5.58069 5.66597 5.68094 5.79094 5.90164 5.93540 5.94159 5.94613 5.97615 6.00341 6.05931 6.25628 6.41005 6.42154 6.47219 6.56689 6.61216 6.65054 6.73202 6.91858 6.96169 7.35947 7.53098 7.54259 7.74133 8.23651 8.26110 9.11312 9.74153 10.48301 11.33967 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.001984 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.779656 B =14108.664336 C =14731.766077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.035 4.035 4 H 0.087 0.913 5 C -0.137 4.137 6 C 0.510 3.490 7 O -0.537 6.537 8 N -0.726 5.726 9 C 0.156 3.844 10 C -0.150 4.150 11 H 0.101 0.899 12 C -0.167 4.167 13 H 0.103 0.897 14 C 0.156 3.844 15 N -0.596 5.596 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.173 3.827 25 C -0.165 4.165 26 H 0.101 0.899 27 C -0.063 4.063 28 C -0.121 4.121 29 C -0.123 4.123 30 C -0.127 4.127 31 C -0.123 4.123 32 C -0.090 4.090 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.024 0.976 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.117 0.883 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.317 -11.424 2.974 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.054 4.054 4 H 0.106 0.894 5 C -0.177 4.177 6 C 0.296 3.704 7 O -0.414 6.414 8 N -0.378 5.378 9 C 0.033 3.967 10 C -0.169 4.169 11 H 0.119 0.881 12 C -0.187 4.187 13 H 0.121 0.879 14 C 0.030 3.970 15 N -0.319 5.319 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.567 5.567 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.047 3.953 25 C -0.185 4.185 26 H 0.119 0.881 27 C -0.063 4.063 28 C -0.139 4.139 29 C -0.141 4.141 30 C -0.145 4.145 31 C -0.141 4.141 32 C -0.108 4.108 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.124 0.876 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.135 0.865 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.639 -10.707 2.864 26.108 hybrid contribution 1.128 0.308 -0.399 1.236 sum -22.511 -10.399 2.464 24.919 Atomic orbital electron populations 1.21754 0.95494 1.01456 1.02160 1.21606 0.96444 0.95086 1.02238 1.20024 0.93306 0.95902 0.96128 0.89418 1.21805 0.96770 0.94681 1.04419 1.20585 0.82205 0.91386 0.76218 1.90692 1.54517 1.47059 1.49108 1.46053 1.07068 1.09961 1.74701 1.20812 0.91890 0.82457 1.01530 1.22530 0.92231 0.97153 1.05030 0.88058 1.23830 0.98208 0.94796 1.01896 0.87882 1.21071 0.87527 0.98473 0.89978 1.45178 1.25057 1.53200 1.08480 1.19007 0.97671 1.14695 1.03719 0.90377 1.24809 0.99309 0.98116 0.98373 1.69804 1.42875 1.28620 1.15364 0.86158 0.81721 0.79898 0.77759 1.21065 1.21536 1.21127 1.21322 0.82922 0.91726 0.99287 1.24358 1.00135 1.03229 0.90827 0.88111 1.19642 0.97048 0.95579 0.94049 1.20940 1.00588 1.00231 0.92169 1.21072 0.98631 0.96387 0.97976 1.21104 0.98743 0.96808 0.97833 1.21131 1.00460 0.99810 0.92694 1.20995 0.97186 0.94686 0.97944 0.92845 0.92745 0.92411 0.91638 0.91540 0.88851 0.88484 0.76482 0.91516 0.91610 0.93137 0.95867 0.93532 0.96430 0.87571 0.86485 0.86413 0.86536 0.86480 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.76 37.15 0.36 -0.66 16 2 C -0.12 -0.76 5.30 -26.73 -0.14 -0.90 16 3 C -0.03 -0.30 1.69 -91.77 -0.16 -0.45 16 4 H 0.09 0.85 7.57 -51.93 -0.39 0.46 16 5 C -0.14 -1.12 5.07 -27.88 -0.14 -1.26 16 6 C 0.51 6.12 7.52 -10.99 -0.08 6.04 16 7 O -0.54 -8.26 14.46 5.56 0.08 -8.17 16 8 N -0.73 -8.44 5.56 -60.29 -0.33 -8.77 16 9 C 0.16 2.15 5.95 -4.04 -0.02 2.13 16 10 C -0.15 -2.31 5.40 -90.62 -0.49 -2.80 16 11 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 12 C -0.17 -2.98 6.85 -89.29 -0.61 -3.59 16 13 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 14 C 0.16 3.26 7.02 -2.58 -0.02 3.24 16 15 N -0.60 -15.28 3.38 -169.12 -0.57 -15.86 16 16 C -0.22 -6.21 10.38 -15.06 -0.16 -6.37 16 17 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 18 C -0.01 -0.28 5.44 -17.43 -0.09 -0.38 16 19 N -0.92 -26.74 10.51 55.49 0.58 -26.15 16 20 Si 0.91 21.94 29.56 -169.99 -5.03 16.91 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.17 4.14 5.89 -2.41 -0.01 4.13 16 25 C -0.17 -3.16 6.74 -89.29 -0.60 -3.76 16 26 H 0.10 1.88 8.12 -51.93 -0.42 1.46 16 27 C -0.06 -0.65 2.81 -104.63 -0.29 -0.94 16 28 C -0.12 -1.19 8.58 -39.59 -0.34 -1.53 16 29 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 30 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 31 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 32 C -0.09 -1.01 8.81 -39.58 -0.35 -1.36 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 7.33 -51.93 -0.38 0.07 16 36 H 0.06 0.41 7.24 -51.93 -0.38 0.03 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.66 7.18 -51.93 -0.37 0.29 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.40 3.80 8.40 -40.82 -0.34 3.46 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.11 2.88 5.98 -51.93 -0.31 2.57 16 48 H 0.12 0.94 7.04 -52.49 -0.37 0.57 16 49 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 50 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 51 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 52 H 0.12 1.31 7.95 -52.49 -0.42 0.89 16 LS Contribution 414.53 15.07 6.25 6.25 Total: -1.00 -32.21 414.53 -12.20 -44.41 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.83 Total: 4.88 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -4.34 Total: -13.49 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.32 Total: -50.78 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.21 -12.20 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717604736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.028 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds