Wall clock time and date at job start Wed Apr 1 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47078 * 2 1 4 4 H 1.09000 * 109.47064 * 54.89833 * 3 2 1 5 5 C 1.53003 * 109.46673 * 174.89850 * 3 2 1 6 6 C 1.50705 * 109.46804 * 186.02578 * 5 3 2 7 7 O 1.21280 * 119.99784 * 5.36484 * 6 5 3 8 8 N 1.34771 * 120.00386 * 185.36374 * 6 5 3 9 9 C 1.46493 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.47286 * 180.02562 * 9 8 6 11 11 H 1.08996 * 115.51542 * 330.58596 * 10 9 8 12 12 C 1.52997 * 117.44122 * 185.16497 * 10 9 8 13 13 H 1.08991 * 119.54142 * 4.16767 * 12 10 9 14 14 C 1.54396 * 118.11688 * 160.85220 * 12 10 9 15 15 N 1.47826 * 104.68789 * 87.25948 * 14 12 10 16 16 C 1.36943 * 127.86538 * 140.39448 * 15 14 12 17 17 H 1.07997 * 119.99673 * 351.73209 * 16 15 14 18 18 C 1.38810 * 120.00113 * 171.73592 * 16 15 14 19 19 N 1.31615 * 119.99880 * 350.87635 * 18 16 15 20 20 Si 1.86794 * 119.99910 * 170.88057 * 18 16 15 21 21 H 1.48499 * 109.47499 * 59.99572 * 20 18 16 22 22 H 1.48502 * 109.47357 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47263 * 299.99680 * 20 18 16 24 24 C 1.48143 * 104.29982 * 320.38612 * 15 14 12 25 25 C 1.52998 * 117.43955 * 115.99832 * 10 9 8 26 26 H 1.08998 * 119.54524 * 355.83837 * 25 10 9 27 27 C 1.50698 * 109.46905 * 294.89491 * 3 2 1 28 28 C 1.38227 * 120.00378 * 299.72266 * 27 3 2 29 29 C 1.38234 * 120.00119 * 179.81185 * 28 27 3 30 30 C 1.38242 * 119.99804 * 0.40118 * 29 28 27 31 31 C 1.38237 * 120.00030 * 359.85358 * 30 29 28 32 32 C 1.38232 * 119.99814 * 359.96036 * 31 30 29 33 33 H 1.08995 * 109.47341 * 178.20332 * 1 2 3 34 34 H 1.08998 * 109.47699 * 298.21185 * 1 2 3 35 35 H 1.09006 * 109.47124 * 58.21060 * 1 2 3 36 36 H 1.09000 * 109.47193 * 240.00562 * 2 1 3 37 37 H 1.08997 * 109.47196 * 120.00014 * 2 1 3 38 38 H 1.08999 * 109.47380 * 66.02831 * 5 3 2 39 39 H 1.09000 * 109.46950 * 306.01869 * 5 3 2 40 40 H 0.97004 * 119.99501 * 359.97438 * 8 6 5 41 41 H 1.09001 * 109.47466 * 60.00566 * 9 8 6 42 42 H 1.09004 * 109.47140 * 300.00271 * 9 8 6 43 43 H 1.09000 * 110.40725 * 205.97254 * 14 12 10 44 44 H 1.08993 * 110.41209 * 328.40754 * 14 12 10 45 45 H 0.97003 * 120.00125 * 180.02562 * 19 18 16 46 46 H 1.08997 * 110.41375 * 280.81131 * 24 15 14 47 47 H 1.09001 * 110.41187 * 158.37682 * 24 15 14 48 48 H 1.07998 * 120.00316 * 0.02562 * 28 27 3 49 49 H 1.08004 * 120.00444 * 180.23711 * 29 28 27 50 50 H 1.08004 * 119.99897 * 179.83724 * 30 29 28 51 51 H 1.07999 * 119.99704 * 179.97438 * 31 30 29 52 52 H 1.08000 * 119.99921 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6039 1.9821 0.8408 5 6 3.5646 1.4444 0.1283 6 6 4.0545 2.8618 0.2771 7 8 3.2583 3.7711 0.3780 8 7 5.3772 3.1190 0.2980 9 6 5.8534 4.4969 0.4421 10 6 7.3834 4.5111 0.4355 11 1 7.8629 3.6124 0.8232 12 6 8.0771 5.8494 0.6972 13 1 7.4783 6.7257 0.9452 14 6 9.5563 5.8281 1.1392 15 7 10.3247 5.8096 -0.1235 16 6 11.4840 6.4791 -0.4119 17 1 11.8693 7.2140 0.2793 18 6 12.1638 6.2131 -1.5926 19 7 11.7993 5.1985 -2.3475 20 14 13.5959 7.2951 -2.1098 21 1 14.6535 7.2478 -1.0684 22 1 14.1470 6.8043 -3.3984 23 1 13.1253 8.6940 -2.2741 24 6 9.5557 4.9021 -1.0065 25 6 8.0767 5.2387 -0.7181 26 1 7.4776 5.6595 -1.5256 27 6 1.6435 2.1155 -1.2888 28 6 2.0856 1.6100 -2.4970 29 6 1.7187 2.2250 -3.6793 30 6 0.9164 3.3505 -3.6530 31 6 0.4785 3.8591 -2.4445 32 6 0.8423 3.2418 -1.2624 33 1 -0.3634 -1.0271 -0.0322 34 1 -0.3634 0.4858 0.9055 35 1 -0.3634 0.5414 -0.8735 36 1 1.8933 -0.5137 -0.8900 37 1 1.8933 -0.5138 0.8899 38 1 4.0049 0.9996 -0.7642 39 1 3.8561 0.8654 1.0046 40 1 6.0140 2.3917 0.2176 41 1 5.4899 4.9104 1.3828 42 1 5.4812 5.0985 -0.3872 43 1 9.7942 6.7232 1.7139 44 1 9.7651 4.9328 1.7247 45 1 12.2745 5.0124 -3.1724 46 1 9.7644 3.8618 -0.7569 47 1 9.7930 5.0979 -2.0522 48 1 2.7149 0.7326 -2.5174 49 1 2.0610 1.8279 -4.6236 50 1 0.6319 3.8325 -4.5767 51 1 -0.1479 4.7386 -2.4240 52 1 0.5006 3.6393 -0.3182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717604736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:09 Heat of formation + Delta-G solvation = 13.993677 kcal Electronic energy + Delta-G solvation = -29156.864081 eV Core-core repulsion = 25314.506075 eV Total energy + Delta-G solvation = -3842.358006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20527 -40.49805 -39.71698 -36.76161 -36.18068 -34.93855 -32.77454 -31.81411 -31.71170 -30.77043 -28.95096 -28.66247 -26.81150 -25.15664 -23.79929 -23.14100 -22.83537 -21.87245 -21.15265 -20.83973 -20.48263 -18.87528 -17.92215 -17.88527 -17.08452 -16.79880 -16.63088 -16.12786 -15.92826 -15.60320 -15.32912 -15.13132 -14.97533 -14.80174 -14.60793 -14.43139 -14.26059 -14.13666 -13.72068 -13.36941 -13.30229 -13.19446 -13.15857 -12.88021 -12.69339 -12.66096 -12.36455 -12.20735 -12.05602 -11.97079 -11.95037 -11.91318 -11.72003 -11.47248 -11.39190 -10.97498 -10.91367 -10.63233 -10.52538 -9.96784 -9.72060 -9.46287 -8.95835 -7.87768 -5.24882 0.55122 0.60290 1.45977 1.49478 1.55724 1.77834 2.20441 2.48417 2.76088 2.96770 3.26558 3.62653 3.70333 3.77621 3.79983 3.85572 3.89468 4.16486 4.20619 4.21764 4.27669 4.32485 4.37573 4.41912 4.45341 4.53317 4.57082 4.66609 4.68659 4.72544 4.72753 4.75215 4.88631 4.92613 5.01034 5.01740 5.08219 5.14699 5.23343 5.23789 5.28576 5.33936 5.39058 5.44749 5.47898 5.52524 5.54728 5.66039 5.70134 5.72106 5.86673 6.21603 6.22037 6.65571 7.02206 7.36591 7.69737 8.45190 9.22218 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.001984 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.779656 B =14108.664336 C =14731.766077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.032 4.032 4 H 0.071 0.929 5 C -0.130 4.130 6 C 0.505 3.495 7 O -0.574 6.574 8 N -0.721 5.721 9 C 0.166 3.834 10 C -0.106 4.106 11 H 0.112 0.888 12 C -0.161 4.161 13 H 0.122 0.878 14 C 0.151 3.849 15 N -0.622 5.622 16 C -0.238 4.238 17 H 0.083 0.917 18 C -0.067 4.067 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.178 3.822 25 C -0.180 4.180 26 H 0.103 0.897 27 C -0.067 4.067 28 C -0.129 4.129 29 C -0.132 4.132 30 C -0.140 4.140 31 C -0.138 4.138 32 C -0.112 4.112 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.414 0.586 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.030 0.970 45 H 0.249 0.751 46 H 0.003 0.997 47 H 0.069 0.931 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.131 0.869 51 H 0.125 0.875 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.729 -12.634 3.810 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.051 4.051 4 H 0.090 0.910 5 C -0.170 4.170 6 C 0.293 3.707 7 O -0.454 6.454 8 N -0.374 5.374 9 C 0.042 3.958 10 C -0.125 4.125 11 H 0.130 0.870 12 C -0.181 4.181 13 H 0.140 0.860 14 C 0.026 3.974 15 N -0.346 5.346 16 C -0.367 4.367 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.205 1.205 24 C 0.053 3.947 25 C -0.200 4.200 26 H 0.121 0.879 27 C -0.067 4.067 28 C -0.147 4.147 29 C -0.150 4.150 30 C -0.158 4.158 31 C -0.156 4.156 32 C -0.130 4.130 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.250 0.750 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.087 0.913 48 H 0.156 0.844 49 H 0.153 0.847 50 H 0.149 0.851 51 H 0.143 0.857 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.061 -11.935 3.731 27.116 hybrid contribution 1.216 0.682 -0.616 1.525 sum -22.844 -11.253 3.114 25.655 Atomic orbital electron populations 1.21747 0.95968 1.01832 1.01307 1.21586 0.95978 0.93693 1.03510 1.20021 0.93654 0.96847 0.94616 0.91023 1.21862 0.96195 0.92302 1.06592 1.21282 0.81706 0.92633 0.75041 1.90690 1.55391 1.48571 1.50724 1.45984 1.07521 1.09372 1.74504 1.20573 0.90187 0.83779 1.01272 1.22434 0.93087 0.96224 1.00737 0.86987 1.23775 0.97047 0.97112 1.00196 0.86022 1.21222 0.88770 0.98973 0.88477 1.45499 1.25184 1.53301 1.10659 1.19393 0.98542 1.14818 1.03931 0.89955 1.25656 1.02205 0.99531 0.98592 1.70024 1.44012 1.30140 1.15482 0.85122 0.78779 0.78144 0.77110 1.20062 1.21916 1.20536 1.21053 0.85889 0.90725 0.97075 1.24029 0.97862 1.06040 0.92019 0.87897 1.19868 0.96477 0.95185 0.95148 1.21218 1.00748 1.00862 0.91852 1.21400 0.98348 0.96275 0.98986 1.21363 0.98992 0.97263 0.98220 1.21348 1.00899 1.00345 0.92980 1.21105 0.98373 0.95747 0.97795 0.91743 0.93016 0.93974 0.90746 0.89767 0.87050 0.85524 0.74976 0.90988 0.92962 0.92531 0.95246 0.94144 0.97957 0.91306 0.84391 0.84692 0.85082 0.85690 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.76 71.98 0.70 -1.13 16 2 C -0.11 -1.16 5.30 30.59 0.16 -1.00 16 3 C -0.03 -0.50 1.69 -11.54 -0.02 -0.52 16 4 H 0.07 1.34 7.57 -2.39 -0.02 1.32 16 5 C -0.13 -1.74 5.07 29.85 0.15 -1.58 16 6 C 0.51 11.07 7.52 87.66 0.66 11.73 16 7 O -0.57 -17.18 14.46 -3.03 -0.04 -17.22 16 8 N -0.72 -14.87 5.56 -463.06 -2.57 -17.45 16 9 C 0.17 4.19 5.95 86.38 0.51 4.71 16 10 C -0.11 -3.02 5.40 -10.79 -0.06 -3.08 16 11 H 0.11 3.05 8.04 -2.39 -0.02 3.03 16 12 C -0.16 -5.47 6.85 -9.93 -0.07 -5.53 16 13 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 14 C 0.15 6.16 7.02 86.60 0.61 6.76 16 15 N -0.62 -32.20 3.38 -688.96 -2.33 -34.53 16 16 C -0.24 -13.40 10.38 84.03 0.87 -12.53 16 17 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 18 C -0.07 -3.80 5.44 84.86 0.46 -3.34 16 19 N -0.95 -56.63 10.51 21.65 0.23 -56.41 16 20 Si 0.98 45.55 29.56 68.60 2.03 47.57 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C 0.18 8.70 5.89 86.54 0.51 9.21 16 25 C -0.18 -6.74 6.74 -9.93 -0.07 -6.81 16 26 H 0.10 3.82 8.12 -2.39 -0.02 3.80 16 27 C -0.07 -1.31 2.81 -19.87 -0.06 -1.37 16 28 C -0.13 -2.32 8.58 22.27 0.19 -2.13 16 29 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 30 C -0.14 -2.81 10.05 22.27 0.22 -2.58 16 31 C -0.14 -2.99 10.05 22.27 0.22 -2.77 16 32 C -0.11 -2.57 8.81 22.27 0.20 -2.37 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.04 0.64 7.33 -2.38 -0.02 0.62 16 36 H 0.07 0.68 7.24 -2.39 -0.02 0.66 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 1.14 7.18 -2.39 -0.02 1.12 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 6.48 8.40 -92.71 -0.78 5.70 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.51 7.94 -2.38 -0.02 1.49 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.07 3.88 5.98 -2.39 -0.01 3.87 16 48 H 0.14 1.81 7.04 -2.91 -0.02 1.79 16 49 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 50 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 51 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 52 H 0.11 2.59 7.95 -2.91 -0.02 2.56 16 Total: -1.00 -71.72 414.53 2.86 -68.87 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.12 Total: 25.74 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 5.43 Total: -16.58 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -4.67 Total: -108.38 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.04 Total: -17.22 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.72 2.86 -68.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717604736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.860 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds