Wall clock time and date at job start Wed Apr 1 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47581 * 2 1 4 4 C 1.52998 * 109.47581 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46797 * 304.99939 * 5 4 3 7 7 F 1.39899 * 109.47187 * 64.99997 * 5 4 3 8 8 C 1.50699 * 109.46971 * 185.00002 * 5 4 3 9 9 O 1.21273 * 120.00067 * 9.99919 * 8 5 4 10 10 N 1.34779 * 119.99764 * 189.99443 * 8 5 4 11 11 C 1.46497 * 119.99883 * 179.97438 * 10 8 5 12 12 C 1.53005 * 109.47085 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51766 * 307.79390 * 12 11 10 14 14 C 1.55059 * 110.58197 * 184.99868 * 12 11 10 15 15 C 1.55030 * 102.12935 * 204.93083 * 14 12 11 16 16 C 1.53322 * 103.78366 * 20.86698 * 15 14 12 17 17 C 1.52652 * 115.56243 * 133.64213 * 16 15 14 18 18 N 1.47222 * 87.77949 * 90.04529 * 17 16 15 19 19 C 1.36932 * 135.96431 * 206.41651 * 18 17 16 20 20 H 1.08004 * 120.00066 * 6.79093 * 19 18 17 21 21 C 1.38808 * 119.99884 * 186.79269 * 19 18 17 22 22 N 1.31629 * 119.99858 * 172.34298 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 352.34104 * 21 19 18 24 24 H 1.48502 * 109.47471 * 175.35206 * 23 21 19 25 25 H 1.48504 * 109.47042 * 55.35242 * 23 21 19 26 26 H 1.48501 * 109.47081 * 295.35483 * 23 21 19 27 27 C 1.47219 * 88.06699 * 26.66772 * 18 17 16 28 28 O 1.42842 * 108.32807 * 1.60437 * 16 15 14 29 29 H 1.09002 * 109.46795 * 300.00108 * 1 2 3 30 30 H 1.08995 * 109.46809 * 60.00062 * 1 2 3 31 31 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47637 * 239.99562 * 2 1 3 33 33 H 1.09004 * 109.47348 * 120.00199 * 2 1 3 34 34 H 1.08998 * 109.46638 * 59.99574 * 3 2 1 35 35 H 1.08995 * 109.46729 * 300.00301 * 3 2 1 36 36 H 1.09003 * 109.46951 * 59.99363 * 4 3 2 37 37 H 1.09004 * 109.46823 * 300.00207 * 4 3 2 38 38 H 1.09004 * 109.47036 * 299.99780 * 6 5 4 39 39 H 1.08997 * 109.47260 * 60.00217 * 6 5 4 40 40 H 1.09007 * 109.47131 * 179.97438 * 6 5 4 41 41 H 0.96994 * 119.99774 * 0.02562 * 10 8 5 42 42 H 1.09002 * 109.47350 * 60.00170 * 11 10 8 43 43 H 1.09006 * 109.47215 * 300.00587 * 11 10 8 44 44 H 1.09008 * 110.87007 * 86.77543 * 14 12 11 45 45 H 1.08998 * 111.05506 * 323.17713 * 14 12 11 46 46 H 1.08993 * 110.56812 * 262.29252 * 15 14 12 47 47 H 1.08997 * 110.68568 * 139.49791 * 15 14 12 48 48 H 1.09002 * 113.50148 * 335.31600 * 17 16 15 49 49 H 1.09005 * 113.56183 * 204.78256 * 17 16 15 50 50 H 0.96991 * 120.00047 * 4.89162 * 22 21 19 51 51 H 1.09004 * 113.49685 * 88.06070 * 27 18 17 52 52 H 1.08993 * 113.49991 * 218.60291 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 6 3.4705 3.6418 -1.1804 7 9 3.7095 3.5101 1.1967 8 6 5.5821 2.8867 -0.1219 9 8 6.1702 1.8589 -0.3835 10 7 6.2716 4.0306 0.0586 11 6 7.7317 4.0322 -0.0607 12 6 8.2623 5.4454 0.1893 13 1 7.7456 6.1653 -0.4455 14 6 9.7926 5.5040 -0.0535 15 6 10.2167 6.7058 0.8293 16 6 9.0713 6.8389 1.8399 17 6 9.4947 7.0129 3.2962 18 7 9.4902 8.4667 3.0639 19 6 10.1306 9.5514 3.6010 20 1 10.9179 9.4091 4.3266 21 6 9.7678 10.8338 3.2130 22 7 10.2740 11.8775 3.8352 23 14 8.5615 11.0785 1.8080 24 1 8.2548 12.5244 1.6649 25 1 7.3096 10.3330 2.0949 26 1 9.1609 10.5725 0.5471 27 6 8.4912 8.2443 2.0057 28 8 8.1237 5.8012 1.5839 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9338 0.9284 -0.8891 37 1 3.9330 0.9287 0.8909 38 1 3.7593 3.1548 -2.1118 39 1 2.3842 3.6406 -1.0913 40 1 3.8335 4.6697 -1.1797 41 1 5.8012 4.8525 0.2681 42 1 8.0149 3.7093 -1.0625 43 1 8.1571 3.3493 0.6749 44 1 10.0122 5.6970 -1.1036 45 1 10.2775 4.5866 0.2804 46 1 10.3038 7.6107 0.2281 47 1 11.1559 6.4953 1.3408 48 1 10.4843 6.6103 3.5122 49 1 8.7404 6.6847 4.0114 50 1 10.9532 11.7537 4.5164 51 1 7.4638 8.2503 2.3698 52 1 8.6338 8.8810 1.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724869587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:34 Heat of formation + Delta-G solvation = -87.103956 kcal Electronic energy + Delta-G solvation = -30707.384843 eV Core-core repulsion = 26429.873690 eV Total energy + Delta-G solvation = -4277.511153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.19596 -40.41143 -39.81280 -37.13122 -36.50012 -34.81870 -33.32711 -32.36040 -32.06069 -29.86888 -28.90729 -27.22634 -25.88801 -25.55742 -24.11916 -22.62177 -21.59981 -21.33065 -21.20709 -20.08965 -19.18288 -18.07089 -17.50551 -16.93963 -16.46069 -16.37690 -15.81673 -15.73048 -15.41118 -15.20644 -14.78595 -14.60070 -14.29172 -14.07150 -13.75843 -13.62751 -13.37212 -13.20464 -13.12613 -12.96932 -12.92037 -12.63086 -12.60652 -12.37148 -12.09924 -11.70871 -11.62878 -11.59196 -11.47328 -11.43732 -11.28867 -11.11319 -11.03571 -10.88132 -10.72702 -10.45606 -10.37102 -9.99141 -9.88403 -9.37643 -9.24949 -8.90329 -8.84915 -7.19474 -6.36359 -3.27161 2.15866 2.69451 3.35350 3.40743 3.61135 3.74609 3.94669 4.05833 4.14886 4.36615 4.52043 4.55370 4.60270 4.64142 4.66898 4.76736 4.81034 4.84524 4.92283 4.97342 5.07688 5.09773 5.23367 5.29723 5.32458 5.36181 5.36651 5.41531 5.42690 5.52061 5.56576 5.60362 5.65556 5.74143 5.78390 5.83400 5.90060 5.96661 6.08259 6.12018 6.18388 6.18840 6.27932 6.29943 6.34589 6.52371 7.03294 7.12555 7.26851 7.78617 8.19558 8.93442 9.45358 10.30975 11.16587 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002204 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.095104 B =12702.804035 C =13418.144083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.106 3.894 6 C -0.176 4.176 7 F -0.191 7.191 8 C 0.500 3.500 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.127 3.873 12 C 0.061 3.939 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.113 4.113 16 C 0.060 3.940 17 C 0.133 3.867 18 N -0.620 5.620 19 C -0.302 4.302 20 H 0.084 0.916 21 C -0.024 4.024 22 N -0.932 5.932 23 Si 1.070 2.930 24 H -0.294 1.294 25 H -0.286 1.286 26 H -0.295 1.295 27 C 0.090 3.910 28 O -0.354 6.354 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.409 0.591 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.046 0.954 50 H 0.261 0.739 51 H 0.052 0.948 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -22.049 -13.794 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.163 4.163 5 C 0.085 3.915 6 C -0.233 4.233 7 F -0.172 7.172 8 C 0.284 3.716 9 O -0.404 6.404 10 N -0.364 5.364 11 C 0.004 3.996 12 C 0.002 3.998 13 H 0.095 0.905 14 C -0.183 4.183 15 C -0.151 4.151 16 C 0.019 3.981 17 C 0.007 3.993 18 N -0.350 5.350 19 C -0.428 4.428 20 H 0.102 0.898 21 C -0.223 4.223 22 N -0.575 5.575 23 Si 0.903 3.097 24 H -0.222 1.222 25 H -0.213 1.213 26 H -0.223 1.223 27 C -0.036 4.036 28 O -0.272 6.272 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.124 -21.488 -14.522 30.023 hybrid contribution 0.774 -0.508 1.101 1.438 sum -14.350 -21.996 -13.421 29.494 Atomic orbital electron populations 1.21774 0.95742 1.01641 1.01882 1.21505 0.95918 0.96454 1.02273 1.21725 0.93998 0.97566 1.02871 1.21986 0.96352 0.92773 1.05211 1.21191 0.91485 0.95477 0.83364 1.22462 1.03042 1.01004 0.96797 1.92937 1.92447 1.84051 1.47774 1.20793 0.89486 0.83847 0.77480 1.90723 1.70296 1.31761 1.47645 1.45946 1.08051 1.11656 1.70698 1.21512 0.79233 0.96400 1.02503 1.23369 0.96188 0.94822 0.85380 0.90527 1.23140 0.94412 0.99813 1.00969 1.22386 0.98334 0.98050 0.96336 1.23709 0.88980 0.87854 0.97578 1.22365 0.98739 0.86026 0.92206 1.45705 1.46305 1.02339 1.40632 1.20092 1.16188 0.83456 1.23081 0.89788 1.25737 1.03247 0.90421 1.02885 1.70923 1.29654 1.30082 1.26793 0.83696 0.76002 0.74840 0.75163 1.22158 1.21254 1.22290 1.23195 0.94644 0.92763 0.92991 1.88793 1.59026 1.55079 1.24325 0.92652 0.92750 0.92755 0.91885 0.91866 0.91238 0.91264 0.89060 0.90169 0.89966 0.89566 0.90747 0.75596 0.89852 0.90205 0.90040 0.90168 0.90112 0.89875 0.93162 0.93617 0.92861 0.93061 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.81 4.64 -26.73 -0.12 -0.94 16 4 C -0.13 -1.03 4.02 -26.73 -0.11 -1.14 16 5 C 0.11 0.97 1.20 -91.77 -0.11 0.86 16 6 C -0.18 -1.13 8.42 37.16 0.31 -0.82 16 7 F -0.19 -2.10 16.42 2.25 0.04 -2.06 16 8 C 0.50 5.71 6.79 -10.98 -0.07 5.64 16 9 O -0.53 -7.45 15.87 5.56 0.09 -7.36 16 10 N -0.71 -7.62 5.53 -60.29 -0.33 -7.96 16 11 C 0.13 1.36 5.41 -4.04 -0.02 1.34 16 12 C 0.06 0.72 3.38 -25.64 -0.09 0.63 16 13 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.15 -1.61 6.60 -24.57 -0.16 -1.78 16 15 C -0.11 -1.70 6.46 -25.49 -0.16 -1.87 16 16 C 0.06 1.06 1.66 -90.66 -0.15 0.90 16 17 C 0.13 2.72 8.20 -8.03 -0.07 2.65 16 18 N -0.62 -15.29 3.66 -184.61 -0.68 -15.97 16 19 C -0.30 -8.69 11.08 -15.06 -0.17 -8.86 16 20 H 0.08 2.53 8.05 -52.48 -0.42 2.11 16 21 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 22 N -0.93 -29.33 13.70 55.49 0.76 -28.57 16 23 Si 1.07 26.65 25.13 -169.99 -4.27 22.38 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -6.69 6.11 56.52 0.35 -6.35 16 26 H -0.29 -6.83 6.63 56.52 0.37 -6.46 16 27 C 0.09 1.92 5.22 -7.88 -0.04 1.88 16 28 O -0.35 -5.58 11.02 -35.23 -0.39 -5.97 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 35 H 0.07 0.38 6.35 -51.93 -0.33 0.05 16 36 H 0.09 0.75 7.81 -51.93 -0.41 0.34 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.46 6.35 -51.93 -0.33 0.13 16 40 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.41 4.03 8.44 -40.82 -0.34 3.68 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 46 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 47 H 0.08 1.25 7.81 -51.93 -0.41 0.84 16 48 H 0.05 0.97 7.91 -51.93 -0.41 0.56 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 51 H 0.05 1.12 7.69 -51.93 -0.40 0.72 16 52 H 0.05 1.10 4.50 -51.93 -0.23 0.87 16 LS Contribution 408.92 15.07 6.16 6.16 Total: -1.00 -33.70 408.92 -8.72 -42.42 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -9.25 Total: 0.58 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.85 Total: -3.65 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.25 Total: -52.50 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.30 Total: -13.34 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.27 Total: 22.38 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.70 -8.72 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724869587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.686 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds