Wall clock time and date at job start Wed Apr 1 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47581 * 2 1 4 4 C 1.52998 * 109.47581 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46797 * 304.99939 * 5 4 3 7 7 F 1.39899 * 109.47187 * 64.99997 * 5 4 3 8 8 C 1.50699 * 109.46971 * 185.00002 * 5 4 3 9 9 O 1.21273 * 120.00067 * 9.99919 * 8 5 4 10 10 N 1.34779 * 119.99764 * 189.99443 * 8 5 4 11 11 C 1.46497 * 119.99883 * 179.97438 * 10 8 5 12 12 C 1.53005 * 109.47085 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51766 * 307.79390 * 12 11 10 14 14 C 1.55059 * 110.58197 * 184.99868 * 12 11 10 15 15 C 1.55030 * 102.12935 * 204.93083 * 14 12 11 16 16 C 1.53322 * 103.78366 * 20.86698 * 15 14 12 17 17 C 1.52652 * 115.56243 * 133.64213 * 16 15 14 18 18 N 1.47222 * 87.77949 * 90.04529 * 17 16 15 19 19 C 1.36932 * 135.96431 * 206.41651 * 18 17 16 20 20 H 1.08004 * 120.00066 * 6.79093 * 19 18 17 21 21 C 1.38808 * 119.99884 * 186.79269 * 19 18 17 22 22 N 1.31629 * 119.99858 * 172.34298 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 352.34104 * 21 19 18 24 24 H 1.48502 * 109.47471 * 175.35206 * 23 21 19 25 25 H 1.48504 * 109.47042 * 55.35242 * 23 21 19 26 26 H 1.48501 * 109.47081 * 295.35483 * 23 21 19 27 27 C 1.47219 * 88.06699 * 26.66772 * 18 17 16 28 28 O 1.42842 * 108.32807 * 1.60437 * 16 15 14 29 29 H 1.09002 * 109.46795 * 300.00108 * 1 2 3 30 30 H 1.08995 * 109.46809 * 60.00062 * 1 2 3 31 31 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47637 * 239.99562 * 2 1 3 33 33 H 1.09004 * 109.47348 * 120.00199 * 2 1 3 34 34 H 1.08998 * 109.46638 * 59.99574 * 3 2 1 35 35 H 1.08995 * 109.46729 * 300.00301 * 3 2 1 36 36 H 1.09003 * 109.46951 * 59.99363 * 4 3 2 37 37 H 1.09004 * 109.46823 * 300.00207 * 4 3 2 38 38 H 1.09004 * 109.47036 * 299.99780 * 6 5 4 39 39 H 1.08997 * 109.47260 * 60.00217 * 6 5 4 40 40 H 1.09007 * 109.47131 * 179.97438 * 6 5 4 41 41 H 0.96994 * 119.99774 * 0.02562 * 10 8 5 42 42 H 1.09002 * 109.47350 * 60.00170 * 11 10 8 43 43 H 1.09006 * 109.47215 * 300.00587 * 11 10 8 44 44 H 1.09008 * 110.87007 * 86.77543 * 14 12 11 45 45 H 1.08998 * 111.05506 * 323.17713 * 14 12 11 46 46 H 1.08993 * 110.56812 * 262.29252 * 15 14 12 47 47 H 1.08997 * 110.68568 * 139.49791 * 15 14 12 48 48 H 1.09002 * 113.50148 * 335.31600 * 17 16 15 49 49 H 1.09005 * 113.56183 * 204.78256 * 17 16 15 50 50 H 0.96991 * 120.00047 * 4.89162 * 22 21 19 51 51 H 1.09004 * 113.49685 * 88.06070 * 27 18 17 52 52 H 1.08993 * 113.49991 * 218.60291 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 6 3.4705 3.6418 -1.1804 7 9 3.7095 3.5101 1.1967 8 6 5.5821 2.8867 -0.1219 9 8 6.1702 1.8589 -0.3835 10 7 6.2716 4.0306 0.0586 11 6 7.7317 4.0322 -0.0607 12 6 8.2623 5.4454 0.1893 13 1 7.7456 6.1653 -0.4455 14 6 9.7926 5.5040 -0.0535 15 6 10.2167 6.7058 0.8293 16 6 9.0713 6.8389 1.8399 17 6 9.4947 7.0129 3.2962 18 7 9.4902 8.4667 3.0639 19 6 10.1306 9.5514 3.6010 20 1 10.9179 9.4091 4.3266 21 6 9.7678 10.8338 3.2130 22 7 10.2740 11.8775 3.8352 23 14 8.5615 11.0785 1.8080 24 1 8.2548 12.5244 1.6649 25 1 7.3096 10.3330 2.0949 26 1 9.1609 10.5725 0.5471 27 6 8.4912 8.2443 2.0057 28 8 8.1237 5.8012 1.5839 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9338 0.9284 -0.8891 37 1 3.9330 0.9287 0.8909 38 1 3.7593 3.1548 -2.1118 39 1 2.3842 3.6406 -1.0913 40 1 3.8335 4.6697 -1.1797 41 1 5.8012 4.8525 0.2681 42 1 8.0149 3.7093 -1.0625 43 1 8.1571 3.3493 0.6749 44 1 10.0122 5.6970 -1.1036 45 1 10.2775 4.5866 0.2804 46 1 10.3038 7.6107 0.2281 47 1 11.1559 6.4953 1.3408 48 1 10.4843 6.6103 3.5122 49 1 8.7404 6.6847 4.0114 50 1 10.9532 11.7537 4.5164 51 1 7.4638 8.2503 2.3698 52 1 8.6338 8.8810 1.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724869587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:32 Heat of formation + Delta-G solvation = -109.970507 kcal Electronic energy + Delta-G solvation = -30708.376411 eV Core-core repulsion = 26429.873690 eV Total energy + Delta-G solvation = -4278.502721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.98077 -41.68933 -40.80129 -38.49945 -37.13234 -35.83657 -34.51511 -33.90177 -33.13509 -31.03637 -29.69052 -28.73688 -27.24417 -26.58239 -25.18758 -23.51661 -23.02806 -22.41590 -21.81174 -20.91056 -20.76455 -19.53403 -18.89014 -17.92250 -17.50059 -17.33839 -17.10269 -16.50192 -16.27905 -16.22680 -16.13962 -15.78988 -15.46460 -15.14886 -15.05203 -14.59612 -14.55662 -14.27484 -14.15675 -13.83198 -13.63698 -13.58385 -13.49744 -13.22584 -13.15622 -13.10521 -12.74512 -12.69039 -12.41935 -12.28638 -12.24438 -12.13166 -12.04229 -11.97650 -11.74515 -11.60358 -11.45076 -11.39208 -11.34543 -11.04185 -10.82185 -10.35763 -10.25213 -9.26012 -8.69783 -5.52103 1.29408 1.35544 1.46490 1.66052 1.89242 2.51385 2.54957 2.94805 3.21215 3.24310 3.38620 3.44278 3.45572 3.56055 3.62442 3.72948 3.89128 4.07898 4.11262 4.13151 4.29349 4.36676 4.38485 4.45042 4.48831 4.56356 4.60910 4.62110 4.66463 4.73784 4.78520 4.80993 4.81168 4.83895 4.88807 4.93206 4.97665 5.04448 5.08055 5.10681 5.12416 5.15310 5.21489 5.26798 5.32205 5.40265 5.49007 5.89994 5.99507 6.28709 6.64925 6.93932 7.26731 8.20598 8.86036 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002204 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.095104 B =12702.804035 C =13418.144083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.122 4.122 5 C 0.105 3.895 6 C -0.172 4.172 7 F -0.203 7.203 8 C 0.497 3.503 9 O -0.559 6.559 10 N -0.710 5.710 11 C 0.131 3.869 12 C 0.058 3.942 13 H 0.095 0.905 14 C -0.132 4.132 15 C -0.117 4.117 16 C 0.086 3.914 17 C 0.125 3.875 18 N -0.647 5.647 19 C -0.291 4.291 20 H 0.052 0.948 21 C -0.083 4.083 22 N -0.967 5.967 23 Si 1.107 2.893 24 H -0.303 1.303 25 H -0.264 1.264 26 H -0.265 1.265 27 C 0.082 3.918 28 O -0.365 6.365 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.414 0.586 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.247 0.753 51 H 0.049 0.951 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.315 -23.646 -16.872 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.161 4.161 5 C 0.083 3.917 6 C -0.230 4.230 7 F -0.184 7.184 8 C 0.282 3.718 9 O -0.438 6.438 10 N -0.361 5.361 11 C 0.008 3.992 12 C 0.001 3.999 13 H 0.112 0.888 14 C -0.170 4.170 15 C -0.155 4.155 16 C 0.045 3.955 17 C -0.001 4.001 18 N -0.378 5.378 19 C -0.418 4.418 20 H 0.070 0.930 21 C -0.274 4.274 22 N -0.612 5.612 23 Si 0.933 3.067 24 H -0.231 1.231 25 H -0.190 1.190 26 H -0.191 1.191 27 C -0.043 4.043 28 O -0.283 6.283 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.250 0.750 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.130 0.870 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.056 0.944 51 H 0.067 0.933 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.727 -23.139 -17.602 33.542 hybrid contribution 1.304 -0.137 2.153 2.521 sum -15.423 -23.276 -15.449 31.911 Atomic orbital electron populations 1.21769 0.95102 1.02005 1.02092 1.21512 0.96465 0.96093 1.02163 1.21697 0.92610 0.98012 1.03255 1.21968 0.97519 0.92188 1.04389 1.21339 0.90161 0.96283 0.83886 1.22494 1.03744 1.00963 0.95759 1.92914 1.92411 1.84306 1.48779 1.21198 0.90438 0.83430 0.76742 1.90706 1.71107 1.32758 1.49189 1.45980 1.08169 1.11759 1.70151 1.21490 0.79169 0.95357 1.03179 1.23631 0.97206 0.95719 0.83340 0.88766 1.23139 0.93407 0.98437 1.01994 1.22417 0.97105 0.99748 0.96198 1.23194 0.89677 0.86472 0.96175 1.22542 0.99235 0.83667 0.94652 1.45719 1.47064 1.03079 1.41909 1.19946 1.15091 0.85192 1.21600 0.92974 1.27104 1.05002 0.90352 1.04984 1.71030 1.30922 1.31241 1.28002 0.83293 0.75144 0.74624 0.73683 1.23105 1.18979 1.19078 1.23363 0.93726 0.95297 0.91890 1.88781 1.58424 1.54002 1.27120 0.92920 0.92050 0.92367 0.91423 0.92624 0.91995 0.89645 0.88938 0.91961 0.88884 0.88183 0.90126 0.75018 0.87805 0.91651 0.86952 0.89048 0.90514 0.90183 0.92478 0.93775 0.94405 0.93310 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.12 -1.36 4.64 30.59 0.14 -1.22 16 4 C -0.12 -1.90 4.02 30.59 0.12 -1.77 16 5 C 0.10 1.74 1.20 -11.54 -0.01 1.72 16 6 C -0.17 -1.74 8.42 71.98 0.61 -1.14 16 7 F -0.20 -4.19 16.42 44.97 0.74 -3.45 16 8 C 0.50 10.52 6.79 87.66 0.60 11.12 16 9 O -0.56 -15.10 15.87 -3.01 -0.05 -15.15 16 10 N -0.71 -13.46 5.53 -463.05 -2.56 -16.02 16 11 C 0.13 2.42 5.41 86.38 0.47 2.88 16 12 C 0.06 1.16 3.38 31.30 0.11 1.26 16 13 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.13 -2.37 6.60 31.99 0.21 -2.16 16 15 C -0.12 -3.17 6.46 31.40 0.20 -2.96 16 16 C 0.09 2.86 1.66 -10.82 -0.02 2.84 16 17 C 0.12 5.00 8.20 83.40 0.68 5.69 16 18 N -0.65 -31.75 3.66 -739.09 -2.70 -34.45 16 19 C -0.29 -17.11 11.08 84.03 0.93 -16.18 16 20 H 0.05 3.30 8.05 -2.91 -0.02 3.28 16 21 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 22 N -0.97 -62.70 13.70 21.65 0.30 -62.40 16 23 Si 1.11 53.03 25.13 68.60 1.72 54.76 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.26 -11.62 6.11 99.48 0.61 -11.01 16 26 H -0.26 -11.28 6.63 99.48 0.66 -10.62 16 27 C 0.08 3.35 5.22 83.50 0.44 3.79 16 28 O -0.37 -10.51 11.02 -148.98 -1.64 -12.15 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.82 7.93 -2.39 -0.02 0.80 16 35 H 0.09 0.71 6.35 -2.39 -0.02 0.70 16 36 H 0.09 1.40 7.81 -2.39 -0.02 1.39 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.75 6.35 -2.39 -0.02 0.73 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.41 7.06 8.44 -92.71 -0.78 6.27 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 46 H 0.08 2.17 7.82 -2.39 -0.02 2.15 16 47 H 0.08 2.23 7.81 -2.39 -0.02 2.21 16 48 H 0.06 2.18 7.91 -2.39 -0.02 2.16 16 49 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.25 16.08 8.73 -92.72 -0.81 15.27 16 51 H 0.05 2.02 7.69 -2.38 -0.02 2.01 16 52 H 0.06 2.23 4.50 -2.39 -0.01 2.22 16 Total: -1.00 -75.03 408.92 1.58 -73.46 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.07 Total: 17.87 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.83 Total: -2.46 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -4.97 Total: -112.88 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.69 Total: -27.29 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.74 Total: -3.45 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.72 Total: 54.76 kcal Total: -75.03 1.58 -73.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724869587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.514 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds