Wall clock time and date at job start Wed Apr 1 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47260 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46840 * 59.99620 * 5 4 3 7 7 F 1.39906 * 109.46813 * 299.99847 * 5 4 3 8 8 C 1.50696 * 109.47323 * 180.02562 * 5 4 3 9 9 O 1.21284 * 120.00064 * 359.97438 * 8 5 4 10 10 N 1.34771 * 120.00249 * 180.02562 * 8 5 4 11 11 C 1.46504 * 120.00474 * 179.97438 * 10 8 5 12 12 C 1.52998 * 109.47045 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.90062 * 59.48893 * 12 11 10 14 14 C 1.54479 * 109.82734 * 180.42299 * 12 11 10 15 15 C 1.55505 * 102.38841 * 140.87881 * 14 12 11 16 16 C 1.53890 * 100.75845 * 327.02889 * 15 14 12 17 17 C 1.52370 * 115.68015 * 263.23572 * 16 15 14 18 18 N 1.47272 * 87.70257 * 218.74210 * 17 16 15 19 19 C 1.36934 * 135.93786 * 206.13715 * 18 17 16 20 20 H 1.08004 * 119.99943 * 7.56354 * 19 18 17 21 21 C 1.38813 * 120.00459 * 187.56083 * 19 18 17 22 22 N 1.31612 * 120.00291 * 174.51861 * 21 19 18 23 23 Si 1.86797 * 119.99617 * 354.51417 * 21 19 18 24 24 H 1.48506 * 109.46986 * 174.95163 * 23 21 19 25 25 H 1.48497 * 109.47404 * 294.95372 * 23 21 19 26 26 H 1.48502 * 109.47140 * 54.95629 * 23 21 19 27 27 C 1.47271 * 88.12775 * 26.40009 * 18 17 16 28 28 O 1.42412 * 106.66675 * 34.97502 * 16 15 14 29 29 H 1.08994 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47507 * 300.00425 * 1 2 3 31 31 H 1.09004 * 109.47602 * 59.99903 * 1 2 3 32 32 H 1.08997 * 109.46931 * 239.99957 * 2 1 3 33 33 H 1.08997 * 109.46940 * 119.99557 * 2 1 3 34 34 H 1.08999 * 109.47002 * 59.99418 * 3 2 1 35 35 H 1.09007 * 109.46804 * 299.99739 * 3 2 1 36 36 H 1.09005 * 109.46792 * 59.99719 * 4 3 2 37 37 H 1.08996 * 109.46974 * 300.00113 * 4 3 2 38 38 H 1.09001 * 109.47059 * 179.97438 * 6 5 4 39 39 H 1.08994 * 109.47509 * 300.00265 * 6 5 4 40 40 H 1.09004 * 109.46919 * 60.00887 * 6 5 4 41 41 H 0.97002 * 119.99961 * 359.97438 * 10 8 5 42 42 H 1.09005 * 109.46634 * 59.99832 * 11 10 8 43 43 H 1.08996 * 109.46844 * 300.00402 * 11 10 8 44 44 H 1.08999 * 110.82108 * 259.09937 * 14 12 11 45 45 H 1.09002 * 110.82070 * 22.45670 * 14 12 11 46 46 H 1.08995 * 111.16272 * 209.15517 * 15 14 12 47 47 H 1.08998 * 111.16093 * 84.89706 * 15 14 12 48 48 H 1.09002 * 113.51597 * 104.03281 * 17 16 15 49 49 H 1.09004 * 113.51581 * 333.44833 * 17 16 15 50 50 H 0.97007 * 120.00029 * 354.90224 * 22 21 19 51 51 H 1.09000 * 113.51590 * 88.30722 * 27 18 17 52 52 H 1.09005 * 113.51399 * 218.89389 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 3.5704 3.6067 1.2479 7 9 3.6131 3.5442 -1.1437 8 6 5.5869 2.8851 -0.0026 9 8 6.1934 1.8348 -0.0024 10 7 6.2608 4.0522 -0.0028 11 6 7.7259 4.0523 -0.0034 12 6 8.2358 5.4948 -0.0042 13 1 7.8692 6.0183 0.8787 14 6 9.7805 5.5045 -0.0157 15 6 10.0996 6.6869 -0.9739 16 6 8.9157 6.5912 -1.9524 17 6 9.1894 5.8381 -3.2484 18 7 8.3670 6.8462 -3.9385 19 6 7.6104 6.8856 -5.0791 20 1 7.4286 5.9796 -5.6381 21 6 7.0769 8.0900 -5.5170 22 7 6.4416 8.1486 -6.6681 23 14 7.2607 9.6276 -4.4723 24 1 6.7172 10.7957 -5.2109 25 1 6.5133 9.4545 -3.2009 26 1 8.6977 9.8550 -4.1747 27 6 8.7194 7.7955 -2.8691 28 8 7.7892 6.1686 -1.1905 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 3.9329 0.9288 -0.8909 37 1 3.9336 0.9286 0.8891 38 1 3.9341 4.6342 1.2477 39 1 2.4805 3.6067 1.2484 40 1 3.9342 3.0931 2.1379 41 1 5.7758 4.8923 -0.0025 42 1 8.0887 3.5385 -0.8937 43 1 8.0896 3.5384 0.8863 44 1 10.1741 5.6975 0.9823 45 1 10.1709 4.5662 -0.4097 46 1 11.0482 6.5319 -1.4878 47 1 10.0937 7.6378 -0.4411 48 1 8.7585 4.8371 -3.2691 49 1 10.2376 5.8534 -3.5472 50 1 6.4097 7.3692 -7.2448 51 1 9.6385 8.3482 -3.0637 52 1 7.8931 8.4408 -2.5707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724869588.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:35 Heat of formation + Delta-G solvation = -110.357818 kcal Electronic energy + Delta-G solvation = -31297.418402 eV Core-core repulsion = 27018.898886 eV Total energy + Delta-G solvation = -4278.519516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.04711 -41.70728 -40.81411 -38.43246 -37.13886 -35.83147 -34.52878 -33.96959 -33.17909 -31.13845 -29.74676 -28.66457 -27.19505 -26.56627 -25.28338 -23.54993 -22.71764 -22.59625 -21.84968 -20.94505 -20.79809 -19.56214 -18.90648 -17.88328 -17.49660 -17.45633 -17.20418 -16.42273 -16.25007 -16.20122 -15.94211 -15.84923 -15.48700 -15.31093 -15.06708 -14.64738 -14.59882 -14.23959 -14.21182 -13.89503 -13.74919 -13.62052 -13.43590 -13.31676 -13.20353 -13.17554 -12.65244 -12.55406 -12.48369 -12.32267 -12.27253 -12.16186 -12.13046 -12.02610 -11.64733 -11.56465 -11.43401 -11.34649 -11.11099 -11.00854 -10.88001 -10.36094 -10.26823 -9.25853 -8.66088 -5.49993 1.22781 1.34830 1.47378 1.66655 1.87355 2.53252 2.60656 2.98350 3.17220 3.21296 3.38311 3.40869 3.45035 3.62308 3.67197 3.75025 3.83743 4.06838 4.08653 4.15661 4.25347 4.35249 4.43139 4.44669 4.50227 4.56210 4.57045 4.60141 4.69307 4.69706 4.75660 4.78439 4.80701 4.86140 4.89218 4.93528 5.00046 5.02190 5.07282 5.11137 5.13232 5.17445 5.21985 5.28175 5.32442 5.36214 5.45164 5.90605 6.22086 6.24391 6.66008 6.89583 7.29072 8.23646 8.85819 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002987 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.985649 B = 9371.883986 C =11039.620895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.120 4.120 5 C 0.099 3.901 6 C -0.170 4.170 7 F -0.209 7.209 8 C 0.493 3.507 9 O -0.562 6.562 10 N -0.705 5.705 11 C 0.110 3.890 12 C 0.060 3.940 13 H 0.115 0.885 14 C -0.133 4.133 15 C -0.128 4.128 16 C 0.088 3.912 17 C 0.103 3.897 18 N -0.659 5.659 19 C -0.290 4.290 20 H 0.038 0.962 21 C -0.088 4.088 22 N -0.971 5.971 23 Si 1.114 2.886 24 H -0.303 1.303 25 H -0.277 1.277 26 H -0.250 1.250 27 C 0.092 3.908 28 O -0.366 6.366 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.412 0.588 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.027 0.973 49 H 0.072 0.928 50 H 0.243 0.757 51 H 0.082 0.918 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -9.746 26.805 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.158 4.158 5 C 0.078 3.922 6 C -0.227 4.227 7 F -0.189 7.189 8 C 0.278 3.722 9 O -0.441 6.441 10 N -0.356 5.356 11 C -0.013 4.013 12 C 0.002 3.998 13 H 0.133 0.867 14 C -0.171 4.171 15 C -0.166 4.166 16 C 0.047 3.953 17 C -0.022 4.022 18 N -0.388 5.388 19 C -0.418 4.418 20 H 0.056 0.944 21 C -0.279 4.279 22 N -0.617 5.617 23 Si 0.938 3.062 24 H -0.231 1.231 25 H -0.204 1.204 26 H -0.174 1.174 27 C -0.032 4.032 28 O -0.285 6.285 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.248 0.752 42 H 0.063 0.937 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.045 0.955 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.100 0.900 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.841 -8.875 26.601 28.056 hybrid contribution 0.026 -1.739 -1.719 2.445 sum -0.815 -10.614 24.883 27.064 Atomic orbital electron populations 1.21769 0.94970 1.02113 1.02073 1.21505 0.96579 0.95809 1.02216 1.21686 0.92552 0.98234 1.03130 1.21950 0.97541 0.92039 1.04291 1.21454 0.89229 0.95960 0.85553 1.22485 1.04534 1.01250 0.94409 1.92928 1.89528 1.82908 1.53572 1.21260 0.90805 0.83960 0.76181 1.90683 1.70537 1.32175 1.50732 1.45948 1.08142 1.08773 1.72704 1.21951 0.79262 0.97631 1.02452 1.23414 0.96633 0.90829 0.88884 0.86723 1.23111 0.91916 0.99378 1.02699 1.23018 0.97086 1.00609 0.95854 1.22843 0.87133 0.94376 0.90911 1.23000 0.95140 0.93382 0.90702 1.46015 1.54525 1.12589 1.25663 1.19949 1.26887 0.94925 1.00045 0.94366 1.27231 0.97892 1.03392 0.99405 1.71018 1.47509 1.31801 1.11325 0.83242 0.78139 0.71773 0.73011 1.23058 1.20363 1.17407 1.23137 0.99397 0.94386 0.86299 1.88351 1.30336 1.75065 1.34776 0.92106 0.91786 0.93268 0.92950 0.90916 0.89325 0.92677 0.92584 0.88410 0.90259 0.88232 0.88229 0.75171 0.93718 0.88007 0.85914 0.89917 0.87817 0.87770 0.95454 0.91074 0.94791 0.90028 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.84 5.93 30.60 0.18 -1.66 16 3 C -0.12 -1.99 4.74 30.60 0.15 -1.85 16 4 C -0.12 -2.53 3.83 30.59 0.12 -2.41 16 5 C 0.10 2.30 1.19 -11.54 -0.01 2.29 16 6 C -0.17 -2.45 8.47 71.98 0.61 -1.84 16 7 F -0.21 -6.31 16.27 44.97 0.73 -5.58 16 8 C 0.49 13.79 6.87 87.66 0.60 14.39 16 9 O -0.56 -18.88 15.98 -3.04 -0.05 -18.93 16 10 N -0.71 -17.91 5.36 -463.06 -2.48 -20.39 16 11 C 0.11 2.56 5.23 86.38 0.45 3.02 16 12 C 0.06 1.23 3.62 31.10 0.11 1.34 16 13 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.13 -1.98 6.56 31.96 0.21 -1.77 16 15 C -0.13 -2.43 6.49 31.76 0.21 -2.23 16 16 C 0.09 2.87 1.56 -10.83 -0.02 2.85 16 17 C 0.10 4.15 8.24 83.47 0.69 4.84 16 18 N -0.66 -34.03 3.70 -740.22 -2.74 -36.77 16 19 C -0.29 -18.29 11.08 84.03 0.93 -17.36 16 20 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 21 C -0.09 -5.60 5.50 84.86 0.47 -5.14 16 22 N -0.97 -66.19 13.70 21.65 0.30 -65.90 16 23 Si 1.11 55.57 25.17 68.60 1.73 57.30 16 24 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 25 H -0.28 -13.00 6.49 99.48 0.65 -12.36 16 26 H -0.25 -10.75 6.18 99.48 0.61 -10.13 16 27 C 0.09 3.73 5.25 83.55 0.44 4.17 16 28 O -0.37 -12.05 10.69 -148.98 -1.59 -13.64 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.12 6.43 -2.39 -0.02 1.10 16 35 H 0.05 1.10 7.80 -2.38 -0.02 1.09 16 36 H 0.06 1.45 8.10 -2.38 -0.02 1.43 16 37 H 0.10 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 39 H 0.10 1.16 6.43 -2.39 -0.02 1.15 16 40 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.41 9.82 7.82 -92.71 -0.72 9.10 16 42 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 1.24 7.85 -2.39 -0.02 1.22 16 46 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16 47 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 2.51 7.99 -2.38 -0.02 2.49 16 50 H 0.24 16.75 8.73 -92.70 -0.81 15.94 16 51 H 0.08 2.94 7.59 -2.39 -0.02 2.92 16 52 H 0.05 2.14 4.80 -2.38 -0.01 2.13 16 Total: -1.00 -86.18 408.01 1.72 -84.46 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.02 Total: 22.03 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.84 Total: -2.59 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.92 Total: -123.06 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.64 Total: -32.57 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.73 Total: -5.58 kcal Atomic # 14 Polarization: 55.57 SS G_CDS: 1.73 Total: 57.30 kcal Total: -86.18 1.72 -84.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724869588.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.896 kcal (2) G-P(sol) polarization free energy of solvation -86.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds