Wall clock time and date at job start Wed Apr 1 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 C 1.53004 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47309 * 304.99809 * 5 4 3 7 7 F 1.39907 * 109.47272 * 64.99922 * 5 4 3 8 8 C 1.50699 * 109.47318 * 184.99991 * 5 4 3 9 9 O 1.21283 * 119.99640 * 10.00077 * 8 5 4 10 10 N 1.34776 * 120.00218 * 189.99922 * 8 5 4 11 11 C 1.46504 * 119.99868 * 179.97438 * 10 8 5 12 12 C 1.53003 * 109.46734 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.82832 * 59.44247 * 12 11 10 14 14 C 1.54473 * 109.82812 * 180.42482 * 12 11 10 15 15 C 1.55510 * 102.38818 * 140.87746 * 14 12 11 16 16 C 1.53881 * 100.75539 * 327.03171 * 15 14 12 17 17 C 1.52377 * 115.67709 * 263.23108 * 16 15 14 18 18 N 1.47275 * 87.70343 * 218.74807 * 17 16 15 19 19 C 1.36935 * 135.93442 * 206.17406 * 18 17 16 20 20 H 1.08006 * 120.00018 * 7.56890 * 19 18 17 21 21 C 1.38818 * 120.00126 * 187.55930 * 19 18 17 22 22 N 1.31612 * 119.99984 * 174.51404 * 21 19 18 23 23 Si 1.86797 * 119.99618 * 354.51503 * 21 19 18 24 24 H 1.48497 * 109.46833 * 174.94589 * 23 21 19 25 25 H 1.48497 * 109.47523 * 294.94736 * 23 21 19 26 26 H 1.48508 * 109.47271 * 54.94852 * 23 21 19 27 27 C 1.47274 * 88.12736 * 26.43491 * 18 17 16 28 28 O 1.42402 * 106.67424 * 34.97284 * 16 15 14 29 29 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47235 * 299.99767 * 1 2 3 31 31 H 1.09004 * 109.46913 * 59.99935 * 1 2 3 32 32 H 1.09002 * 109.47054 * 240.00101 * 2 1 3 33 33 H 1.08995 * 109.46760 * 119.99931 * 2 1 3 34 34 H 1.09002 * 109.47318 * 59.99624 * 3 2 1 35 35 H 1.09004 * 109.47323 * 299.99813 * 3 2 1 36 36 H 1.09002 * 109.47054 * 60.00101 * 4 3 2 37 37 H 1.08995 * 109.46760 * 299.99931 * 4 3 2 38 38 H 1.08991 * 109.47157 * 300.00296 * 6 5 4 39 39 H 1.09007 * 109.46562 * 60.00379 * 6 5 4 40 40 H 1.09003 * 109.47232 * 179.97438 * 6 5 4 41 41 H 0.97001 * 120.00019 * 0.02562 * 10 8 5 42 42 H 1.08999 * 109.46998 * 60.00501 * 11 10 8 43 43 H 1.08997 * 109.47459 * 300.00487 * 11 10 8 44 44 H 1.09001 * 110.82679 * 259.09880 * 14 12 11 45 45 H 1.09004 * 110.82915 * 22.45718 * 14 12 11 46 46 H 1.09002 * 111.16142 * 209.15506 * 15 14 12 47 47 H 1.09003 * 111.15706 * 84.90239 * 15 14 12 48 48 H 1.08996 * 113.51643 * 104.03947 * 17 16 15 49 49 H 1.09006 * 113.51474 * 333.45290 * 17 16 15 50 50 H 0.96998 * 120.00657 * 354.90781 * 22 21 19 51 51 H 1.08999 * 113.51507 * 88.27374 * 27 18 17 52 52 H 1.08997 * 113.50859 * 218.85232 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.4705 3.6409 -1.1824 7 9 3.7094 3.5112 1.1949 8 6 5.5820 2.8868 -0.1232 9 8 6.1702 1.8587 -0.3839 10 7 6.2715 4.0308 0.0563 11 6 7.7317 4.0323 -0.0629 12 6 8.2621 5.4457 0.1859 13 1 7.9736 5.7787 1.1828 14 6 9.8009 5.4591 0.0516 15 6 10.0610 6.8112 -0.6713 16 6 8.8018 6.9140 -1.5497 17 6 8.9600 6.4388 -2.9888 18 7 8.1009 7.5649 -3.3926 19 6 7.2563 7.8330 -4.4366 20 1 7.0162 7.0582 -5.1497 21 6 6.7085 9.1006 -4.5782 22 7 5.9843 9.3898 -5.6384 23 14 6.9992 10.3958 -3.2639 24 1 6.4170 11.6885 -3.7056 25 1 6.3531 9.9691 -1.9968 26 1 8.4588 10.5595 -3.0445 27 6 8.5525 8.2790 -2.1864 28 8 7.7330 6.3450 -0.8001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9329 0.9288 0.8908 38 1 3.7592 3.1531 -2.1133 39 1 2.3841 3.6397 -1.0932 40 1 3.8335 4.6688 -1.1826 41 1 5.8010 4.8529 0.2652 42 1 8.0147 3.7087 -1.0645 43 1 8.1571 3.3502 0.6731 44 1 10.2757 5.4467 1.0327 45 1 10.1444 4.6203 -0.5538 46 1 10.9633 6.7642 -1.2810 47 1 10.1122 7.6347 0.0410 48 1 8.5134 5.4623 -3.1759 49 1 9.9812 6.5152 -3.3623 50 1 5.8942 8.7429 -6.3555 51 1 9.4620 8.8599 -2.3398 52 1 7.7631 8.8506 -1.6985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724869589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:38 Heat of formation + Delta-G solvation = -109.469213 kcal Electronic energy + Delta-G solvation = -31304.759058 eV Core-core repulsion = 27026.278075 eV Total energy + Delta-G solvation = -4278.480983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.04755 -41.70194 -40.81593 -38.43189 -37.17148 -35.80653 -34.51023 -33.95620 -33.18265 -31.12865 -29.74203 -28.69922 -27.18349 -26.64921 -25.27704 -23.54101 -22.70798 -22.59926 -21.82700 -20.95101 -20.78437 -19.54426 -18.96498 -17.87103 -17.52225 -17.47309 -17.11307 -16.39131 -16.26541 -16.22529 -15.89402 -15.88031 -15.45201 -15.33717 -15.05708 -14.63194 -14.62477 -14.28394 -14.16822 -13.89083 -13.76047 -13.68476 -13.42148 -13.30746 -13.30053 -13.18720 -12.65552 -12.55033 -12.48758 -12.30519 -12.27545 -12.17460 -12.13025 -12.01974 -11.65958 -11.56257 -11.42863 -11.34062 -11.10091 -11.00317 -10.87572 -10.35684 -10.26957 -9.24415 -8.63715 -5.48158 1.23471 1.36383 1.47702 1.66998 1.84810 2.53739 2.60254 2.99305 3.17559 3.19827 3.34041 3.37556 3.43542 3.62102 3.64927 3.74717 3.83984 4.05602 4.07813 4.15082 4.25204 4.34488 4.41866 4.43556 4.49876 4.50534 4.57454 4.61336 4.66846 4.71163 4.75344 4.77568 4.80066 4.85552 4.87202 4.93309 5.00393 5.02243 5.04647 5.10689 5.13628 5.18091 5.21879 5.28097 5.32030 5.36679 5.46015 5.92377 6.21532 6.23922 6.67796 6.88566 7.30645 8.25471 8.88139 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.002950 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.206388 B = 9488.675392 C =11117.614335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.119 4.119 5 C 0.112 3.888 6 C -0.176 4.176 7 F -0.196 7.196 8 C 0.495 3.505 9 O -0.560 6.560 10 N -0.707 5.707 11 C 0.111 3.889 12 C 0.060 3.940 13 H 0.109 0.891 14 C -0.133 4.133 15 C -0.128 4.128 16 C 0.088 3.912 17 C 0.105 3.895 18 N -0.658 5.658 19 C -0.288 4.288 20 H 0.042 0.958 21 C -0.087 4.087 22 N -0.972 5.972 23 Si 1.111 2.889 24 H -0.304 1.304 25 H -0.277 1.277 26 H -0.252 1.252 27 C 0.091 3.909 28 O -0.364 6.364 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.412 0.588 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.244 0.756 51 H 0.081 0.919 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -14.762 19.801 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.157 4.157 5 C 0.090 3.910 6 C -0.233 4.233 7 F -0.177 7.177 8 C 0.279 3.721 9 O -0.439 6.439 10 N -0.357 5.357 11 C -0.012 4.012 12 C 0.003 3.997 13 H 0.127 0.873 14 C -0.171 4.171 15 C -0.166 4.166 16 C 0.047 3.953 17 C -0.021 4.021 18 N -0.387 5.387 19 C -0.415 4.415 20 H 0.060 0.940 21 C -0.278 4.278 22 N -0.617 5.617 23 Si 0.937 3.063 24 H -0.232 1.232 25 H -0.204 1.204 26 H -0.177 1.177 27 C -0.033 4.033 28 O -0.283 6.283 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.248 0.752 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.053 0.947 51 H 0.098 0.902 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.754 -13.873 19.865 24.241 hybrid contribution -0.065 -1.295 -1.399 1.908 sum 0.689 -15.169 18.466 23.907 Atomic orbital electron populations 1.21772 0.95049 1.02104 1.02049 1.21500 0.96509 0.95767 1.02286 1.21711 0.92564 0.98306 1.03168 1.21949 0.97583 0.91647 1.04563 1.21202 0.90144 0.96261 0.83350 1.22475 1.04001 1.00559 0.96276 1.92893 1.92416 1.84275 1.48128 1.21200 0.90417 0.83641 0.76815 1.90687 1.71055 1.32954 1.49243 1.45946 1.08551 1.11339 1.69869 1.21936 0.79359 0.97797 1.02127 1.23374 0.95597 0.87650 0.93087 0.87314 1.23105 0.92190 0.97969 1.03843 1.23018 0.96240 0.98786 0.98596 1.22847 0.87896 0.93519 0.91050 1.22981 0.94566 0.91598 0.92910 1.46027 1.48892 1.18499 1.25265 1.19957 1.21869 0.96742 1.02975 0.93996 1.27128 0.97868 0.99357 1.03435 1.71015 1.44565 1.37612 1.08534 0.83258 0.77793 0.72843 0.72456 1.23212 1.20399 1.17679 1.23136 0.98599 0.95573 0.85979 1.88339 1.31284 1.60071 1.48586 0.92106 0.92513 0.92613 0.91883 0.91829 0.91280 0.90644 0.89711 0.90671 0.90256 0.87687 0.91547 0.75209 0.92910 0.88628 0.86227 0.89678 0.87741 0.88003 0.95022 0.91164 0.94682 0.90197 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.75 5.93 30.59 0.18 -1.57 16 3 C -0.12 -1.94 4.64 30.59 0.14 -1.80 16 4 C -0.12 -2.42 4.02 30.59 0.12 -2.30 16 5 C 0.11 2.59 1.20 -11.54 -0.01 2.57 16 6 C -0.18 -3.89 8.42 71.98 0.61 -3.29 16 7 F -0.20 -4.62 16.42 44.97 0.74 -3.88 16 8 C 0.49 13.77 6.79 87.66 0.60 14.37 16 9 O -0.56 -18.52 15.87 -3.04 -0.05 -18.57 16 10 N -0.71 -18.16 5.44 -463.05 -2.52 -20.68 16 11 C 0.11 2.59 5.23 86.38 0.45 3.04 16 12 C 0.06 1.27 3.62 31.10 0.11 1.38 16 13 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.13 -2.01 6.56 31.96 0.21 -1.80 16 15 C -0.13 -2.44 6.49 31.76 0.21 -2.23 16 16 C 0.09 2.78 1.56 -10.81 -0.02 2.76 16 17 C 0.10 4.06 8.24 83.47 0.69 4.74 16 18 N -0.66 -32.90 3.70 -740.00 -2.74 -35.64 16 19 C -0.29 -17.53 11.08 84.04 0.93 -16.60 16 20 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 21 C -0.09 -5.37 5.50 84.86 0.47 -4.90 16 22 N -0.97 -64.71 13.70 21.65 0.30 -64.41 16 23 Si 1.11 54.62 25.17 68.60 1.73 56.35 16 24 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.28 -12.82 6.49 99.48 0.65 -12.18 16 26 H -0.25 -10.77 6.18 99.48 0.61 -10.16 16 27 C 0.09 3.64 5.25 83.57 0.44 4.08 16 28 O -0.36 -11.68 10.69 -148.98 -1.59 -13.27 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.12 7.94 -2.39 -0.02 1.10 16 35 H 0.07 1.15 6.34 -2.38 -0.02 1.13 16 36 H 0.08 1.84 7.81 -2.39 -0.02 1.82 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.88 6.34 -2.38 -0.02 1.86 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.41 10.13 8.37 -92.71 -0.78 9.35 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.26 7.85 -2.38 -0.02 1.24 16 46 H 0.10 1.68 7.93 -2.39 -0.02 1.67 16 47 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 2.39 7.99 -2.38 -0.02 2.37 16 50 H 0.24 16.38 8.73 -92.71 -0.81 15.57 16 51 H 0.08 2.85 7.59 -2.39 -0.02 2.83 16 52 H 0.05 2.08 4.80 -2.39 -0.01 2.07 16 Total: -1.00 -79.89 408.95 1.63 -78.26 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.07 Total: 24.58 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.84 Total: -2.72 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -4.96 Total: -120.74 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.64 Total: -31.85 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.74 Total: -3.88 kcal Atomic # 14 Polarization: 54.62 SS G_CDS: 1.73 Total: 56.35 kcal Total: -79.89 1.63 -78.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724869589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.211 kcal (2) G-P(sol) polarization free energy of solvation -79.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds