Wall clock time and date at job start Wed Apr 1 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 C 1.52997 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47085 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47077 * 59.99540 * 5 4 3 7 7 F 1.39896 * 109.46880 * 299.99795 * 5 4 3 8 8 C 1.50699 * 109.46967 * 179.97438 * 5 4 3 9 9 O 1.21273 * 120.00067 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99764 * 179.97438 * 8 5 4 11 11 C 1.46497 * 119.99883 * 179.97438 * 10 8 5 12 12 C 1.53005 * 109.47085 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51766 * 307.79390 * 12 11 10 14 14 C 1.55059 * 110.58197 * 184.99868 * 12 11 10 15 15 C 1.55030 * 102.12935 * 204.93083 * 14 12 11 16 16 C 1.53322 * 103.78366 * 20.86698 * 15 14 12 17 17 C 1.52652 * 115.56243 * 133.64213 * 16 15 14 18 18 N 1.47222 * 87.77949 * 90.04529 * 17 16 15 19 19 C 1.36932 * 135.96431 * 206.41651 * 18 17 16 20 20 H 1.08004 * 120.00066 * 6.79093 * 19 18 17 21 21 C 1.38808 * 119.99884 * 186.79269 * 19 18 17 22 22 N 1.31629 * 119.99858 * 172.34298 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 352.34104 * 21 19 18 24 24 H 1.48502 * 109.47471 * 175.35206 * 23 21 19 25 25 H 1.48504 * 109.47042 * 55.35242 * 23 21 19 26 26 H 1.48501 * 109.47081 * 295.35483 * 23 21 19 27 27 C 1.47219 * 88.06699 * 26.66772 * 18 17 16 28 28 O 1.42842 * 108.32807 * 1.60437 * 16 15 14 29 29 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47282 * 299.99703 * 1 2 3 31 31 H 1.08997 * 109.47399 * 60.00134 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00297 * 2 1 3 33 33 H 1.08997 * 109.47399 * 119.99866 * 2 1 3 34 34 H 1.09002 * 109.47292 * 59.99673 * 3 2 1 35 35 H 1.09006 * 109.47169 * 300.00154 * 3 2 1 36 36 H 1.09003 * 109.47359 * 60.00087 * 4 3 2 37 37 H 1.08997 * 109.47056 * 299.99818 * 4 3 2 38 38 H 1.08997 * 109.47020 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.47492 * 300.00086 * 6 5 4 40 40 H 1.09009 * 109.47266 * 60.00412 * 6 5 4 41 41 H 0.96994 * 119.99774 * 0.02562 * 10 8 5 42 42 H 1.09002 * 109.47350 * 60.00170 * 11 10 8 43 43 H 1.09006 * 109.47215 * 300.00587 * 11 10 8 44 44 H 1.09008 * 110.87007 * 86.77543 * 14 12 11 45 45 H 1.08998 * 111.05506 * 323.17713 * 14 12 11 46 46 H 1.08993 * 110.56812 * 262.29252 * 15 14 12 47 47 H 1.08997 * 110.68568 * 139.49791 * 15 14 12 48 48 H 1.09002 * 113.50148 * 335.31600 * 17 16 15 49 49 H 1.09005 * 113.56183 * 204.78256 * 17 16 15 50 50 H 0.96991 * 120.00047 * 4.89162 * 22 21 19 51 51 H 1.09004 * 113.49685 * 88.06070 * 27 18 17 52 52 H 1.08993 * 113.49991 * 218.60291 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 3.5703 3.6068 1.2478 7 9 3.6130 3.5443 -1.1436 8 6 5.5868 2.8853 -0.0013 9 8 6.1932 1.8350 -0.0013 10 7 6.2606 4.0525 -0.0023 11 6 7.7256 4.0526 -0.0018 12 6 8.2356 5.4952 -0.0025 13 1 7.7734 6.0633 -0.8098 14 6 9.7807 5.5271 -0.1284 15 6 10.1326 6.8893 0.5228 16 6 8.9085 7.2066 1.3899 17 6 9.2116 7.6787 2.8096 18 7 9.2278 9.0550 2.2871 19 6 9.8234 10.2358 2.6422 20 1 10.5485 10.2558 3.4423 21 6 9.4950 11.4073 1.9737 22 7 9.9498 12.5631 2.4094 23 14 8.4078 11.3434 0.4561 24 1 8.1155 12.7254 -0.0021 25 1 7.1358 10.6522 0.7871 26 1 9.1078 10.6017 -0.6234 27 6 8.3184 8.6073 1.2195 28 8 7.9838 6.1240 1.2750 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.9329 0.9290 -0.8909 37 1 3.9336 0.9287 0.8891 38 1 3.9339 4.6343 1.2476 39 1 2.4803 3.6068 1.2483 40 1 3.9340 3.0933 2.1380 41 1 5.7756 4.8925 -0.0027 42 1 8.0894 3.5378 -0.8911 43 1 8.0887 3.5397 0.8889 44 1 10.0856 5.5066 -1.1748 45 1 10.2356 4.7041 0.4227 46 1 10.2695 7.6548 -0.2409 47 1 11.0266 6.8014 1.1401 48 1 10.1798 7.3436 3.1817 49 1 8.4010 7.4906 3.5137 50 1 10.5709 12.5905 3.1538 51 1 7.2647 8.6710 1.4911 52 1 8.5326 9.0560 0.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724869590.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:42 Heat of formation + Delta-G solvation = -87.541367 kcal Electronic energy + Delta-G solvation = -30711.995938 eV Core-core repulsion = 26434.465817 eV Total energy + Delta-G solvation = -4277.530121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.22943 -40.42641 -39.81659 -37.13111 -36.47532 -34.84886 -33.34692 -32.37346 -32.06943 -29.89884 -28.87996 -27.20885 -25.83676 -25.57635 -24.12541 -22.62996 -21.61181 -21.34181 -21.22531 -20.11123 -19.20325 -18.04373 -17.52068 -16.90822 -16.60355 -16.29812 -15.83658 -15.69687 -15.44741 -15.23947 -14.76788 -14.58646 -14.34633 -14.05704 -13.77421 -13.65878 -13.29109 -13.22589 -13.13862 -12.99489 -12.86622 -12.62871 -12.57857 -12.39302 -12.10908 -11.73377 -11.63772 -11.56373 -11.48918 -11.43723 -11.30032 -11.13153 -11.02732 -10.86631 -10.73986 -10.46597 -10.38404 -10.00375 -9.89678 -9.38212 -9.26203 -8.91696 -8.86601 -7.21077 -6.37592 -3.28656 2.15697 2.68101 3.35161 3.39659 3.60420 3.73180 3.95130 4.07708 4.14727 4.36903 4.51291 4.54295 4.61239 4.63068 4.67725 4.77453 4.79863 4.83389 4.91986 4.99644 5.07067 5.14195 5.24433 5.31160 5.34267 5.35423 5.37652 5.42038 5.44464 5.51548 5.58636 5.63540 5.65598 5.73766 5.79439 5.82954 5.90646 5.97293 6.07468 6.10883 6.17244 6.18071 6.25782 6.27252 6.32554 6.50196 7.01679 7.11395 7.24498 7.78034 8.18220 8.92044 9.43954 10.29347 11.15287 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.002196 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.250793 B =12749.357362 C =13473.797605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.124 4.124 5 C 0.107 3.893 6 C -0.178 4.178 7 F -0.193 7.193 8 C 0.500 3.500 9 O -0.527 6.527 10 N -0.712 5.712 11 C 0.127 3.873 12 C 0.061 3.939 13 H 0.078 0.922 14 C -0.145 4.145 15 C -0.114 4.114 16 C 0.060 3.940 17 C 0.134 3.866 18 N -0.619 5.619 19 C -0.303 4.303 20 H 0.084 0.916 21 C -0.024 4.024 22 N -0.932 5.932 23 Si 1.070 2.930 24 H -0.294 1.294 25 H -0.286 1.286 26 H -0.294 1.294 27 C 0.090 3.910 28 O -0.356 6.356 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.046 0.954 50 H 0.261 0.739 51 H 0.051 0.949 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -24.303 -6.938 28.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.162 4.162 5 C 0.086 3.914 6 C -0.235 4.235 7 F -0.173 7.173 8 C 0.284 3.716 9 O -0.403 6.403 10 N -0.364 5.364 11 C 0.004 3.996 12 C 0.002 3.998 13 H 0.095 0.905 14 C -0.183 4.183 15 C -0.151 4.151 16 C 0.019 3.981 17 C 0.007 3.993 18 N -0.350 5.350 19 C -0.429 4.429 20 H 0.102 0.898 21 C -0.223 4.223 22 N -0.574 5.574 23 Si 0.903 3.097 24 H -0.221 1.221 25 H -0.213 1.213 26 H -0.223 1.223 27 C -0.036 4.036 28 O -0.274 6.274 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.886 -23.915 -7.854 28.747 hybrid contribution 0.685 -0.275 1.016 1.256 sum -13.200 -24.190 -6.838 28.393 Atomic orbital electron populations 1.21775 0.95745 1.01627 1.01896 1.21503 0.95919 0.96449 1.02251 1.21707 0.93987 0.97537 1.02911 1.21970 0.96326 0.92762 1.05135 1.21196 0.90531 0.94973 0.84717 1.22481 1.03562 1.01560 0.95906 1.92913 1.89572 1.82573 1.52265 1.20790 0.89694 0.84215 0.76920 1.90723 1.69596 1.31117 1.48857 1.45963 1.07741 1.08851 1.73809 1.21511 0.79145 0.95674 1.03308 1.23375 0.95673 0.92514 0.88202 0.90465 1.23139 0.94399 0.98788 1.02009 1.22387 0.97715 0.95980 0.99040 1.23709 0.89085 0.86377 0.98901 1.22361 0.99038 0.85372 0.92535 1.45702 1.53192 1.06209 1.29859 1.20089 1.21178 0.83011 1.18606 0.89786 1.25737 1.02575 0.90604 1.03339 1.70924 1.33415 1.23776 1.29290 0.83697 0.76055 0.74454 0.75514 1.22141 1.21274 1.22264 1.23196 0.95425 0.91068 0.93918 1.88766 1.57689 1.45806 1.35092 0.92763 0.92707 0.92689 0.91901 0.91870 0.91289 0.91240 0.90026 0.89346 0.90528 0.89688 0.89883 0.75643 0.89898 0.90140 0.90023 0.90166 0.90104 0.89873 0.93168 0.93674 0.92852 0.93095 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.82 4.74 -26.73 -0.13 -0.95 16 4 C -0.12 -1.02 3.83 -26.73 -0.10 -1.12 16 5 C 0.11 0.98 1.19 -91.77 -0.11 0.87 16 6 C -0.18 -1.30 8.47 37.15 0.31 -0.98 16 7 F -0.19 -1.97 16.27 2.25 0.04 -1.94 16 8 C 0.50 5.71 6.87 -10.98 -0.08 5.64 16 9 O -0.53 -7.48 15.98 5.56 0.09 -7.39 16 10 N -0.71 -7.53 5.45 -60.29 -0.33 -7.86 16 11 C 0.13 1.35 5.41 -4.04 -0.02 1.33 16 12 C 0.06 0.71 3.38 -25.64 -0.09 0.62 16 13 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.15 -1.61 6.60 -24.57 -0.16 -1.77 16 15 C -0.11 -1.69 6.46 -25.49 -0.16 -1.85 16 16 C 0.06 1.04 1.66 -90.66 -0.15 0.89 16 17 C 0.13 2.67 8.20 -8.03 -0.07 2.60 16 18 N -0.62 -15.10 3.66 -184.61 -0.68 -15.78 16 19 C -0.30 -8.64 11.08 -15.06 -0.17 -8.81 16 20 H 0.08 2.52 8.05 -52.48 -0.42 2.09 16 21 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 22 N -0.93 -29.18 13.70 55.49 0.76 -28.42 16 23 Si 1.07 26.54 25.13 -169.99 -4.27 22.27 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -6.65 6.11 56.52 0.35 -6.30 16 26 H -0.29 -6.82 6.63 56.52 0.37 -6.45 16 27 C 0.09 1.89 5.22 -7.88 -0.04 1.85 16 28 O -0.36 -5.40 11.02 -35.23 -0.39 -5.79 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 35 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.08 0.56 7.56 -51.93 -0.39 0.17 16 39 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 40 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.41 3.91 7.89 -40.82 -0.32 3.58 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 46 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 47 H 0.08 1.23 7.81 -51.93 -0.41 0.83 16 48 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.26 8.07 8.73 -40.82 -0.36 7.72 16 51 H 0.05 1.09 7.69 -51.93 -0.40 0.69 16 52 H 0.05 1.10 4.50 -51.93 -0.23 0.87 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -33.18 407.98 -8.69 -41.87 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -9.21 Total: 0.72 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.85 Total: -3.83 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.24 Total: -52.05 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.30 Total: -13.18 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.27 Total: 22.27 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.18 -8.69 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724869590.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.671 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds