Wall clock time and date at job start Wed Apr 1 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47129 * 2 1 4 4 H 1.09004 * 109.46886 * 303.31985 * 3 2 1 5 5 C 1.53005 * 109.46905 * 63.31765 * 3 2 1 6 6 C 1.50706 * 109.47072 * 187.50940 * 5 3 2 7 7 C 1.38231 * 119.99587 * 261.77793 * 6 5 3 8 8 C 1.38242 * 119.99400 * 179.78856 * 7 6 5 9 9 C 1.38231 * 120.00134 * 0.43857 * 8 7 6 10 10 C 1.38241 * 120.00050 * 359.81371 * 9 8 7 11 11 C 1.38230 * 119.99556 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47274 * 183.31946 * 3 2 1 13 13 O 1.21287 * 119.99780 * 239.99798 * 12 3 2 14 14 N 1.34778 * 120.00390 * 59.99821 * 12 3 2 15 15 C 1.46498 * 120.00237 * 179.97438 * 14 12 3 16 16 C 1.52995 * 109.47138 * 180.02562 * 15 14 12 17 17 H 1.08998 * 115.51447 * 29.58646 * 16 15 14 18 18 C 1.52998 * 117.44429 * 244.24021 * 16 15 14 19 19 H 1.09003 * 119.53865 * 4.11817 * 18 16 15 20 20 C 1.57697 * 116.11302 * 161.63636 * 18 16 15 21 21 N 1.48144 * 104.66966 * 87.31101 * 20 18 16 22 22 C 1.36938 * 127.83534 * 139.77726 * 21 20 18 23 23 H 1.08003 * 119.99907 * 193.23371 * 22 21 20 24 24 C 1.38813 * 119.99788 * 13.24312 * 22 21 20 25 25 N 1.31611 * 120.00740 * 7.79785 * 24 22 21 26 26 Si 1.86808 * 119.99681 * 187.79922 * 24 22 21 27 27 H 1.48504 * 109.46826 * 94.97720 * 26 24 22 28 28 H 1.48492 * 109.47292 * 214.97766 * 26 24 22 29 29 H 1.48506 * 109.47284 * 334.98155 * 26 24 22 30 30 C 1.48143 * 104.32660 * 319.77002 * 21 20 18 31 31 C 1.52998 * 117.44274 * 175.00247 * 16 15 14 32 32 H 1.09003 * 119.54008 * 355.87665 * 31 16 15 33 33 H 1.09008 * 109.46895 * 294.54992 * 1 2 3 34 34 H 1.09005 * 109.47253 * 174.55642 * 1 2 3 35 35 H 1.08999 * 109.47518 * 54.55192 * 1 2 3 36 36 H 1.08997 * 109.47437 * 119.99811 * 2 1 3 37 37 H 1.09002 * 109.47314 * 240.00046 * 2 1 3 38 38 H 1.08996 * 109.47327 * 307.50828 * 5 3 2 39 39 H 1.08996 * 109.47372 * 67.51215 * 5 3 2 40 40 H 1.08000 * 120.00527 * 359.97438 * 7 6 5 41 41 H 1.07997 * 119.99703 * 180.27718 * 8 7 6 42 42 H 1.08003 * 120.00286 * 179.83734 * 9 8 7 43 43 H 1.07997 * 119.99797 * 179.97438 * 10 9 8 44 44 H 1.08007 * 119.99531 * 179.97438 * 11 10 9 45 45 H 0.97001 * 119.99456 * 0.02562 * 14 12 3 46 46 H 1.09004 * 109.46995 * 300.00233 * 15 14 12 47 47 H 1.08996 * 109.46992 * 59.99982 * 15 14 12 48 48 H 1.09000 * 110.91988 * 328.23059 * 20 18 16 49 49 H 1.09003 * 109.83537 * 205.84258 * 20 18 16 50 50 H 0.96996 * 120.00381 * 180.02562 * 25 24 22 51 51 H 1.08990 * 110.41233 * 280.80767 * 30 21 20 52 52 H 1.09002 * 110.40956 * 158.36839 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6288 1.9732 -0.8588 5 6 1.5992 2.1393 1.2889 6 6 1.9396 3.6052 1.2092 7 6 3.0898 4.0813 1.8102 8 6 3.4042 5.4253 1.7334 9 6 2.5638 6.2945 1.0633 10 6 1.4109 5.8192 0.4667 11 6 1.0988 4.4746 0.5399 12 6 3.5447 1.4434 -0.0823 13 8 4.2001 1.9513 0.8029 14 7 4.1622 0.8797 -1.1394 15 6 5.6249 0.8811 -1.2196 16 6 6.0656 0.1848 -2.5087 17 1 5.3688 0.2579 -3.3437 18 6 6.8669 -1.1114 -2.3716 19 1 7.0407 -1.5336 -1.3818 20 6 6.9218 -2.0321 -3.6507 21 7 8.0757 -1.5247 -4.4289 22 6 9.0133 -2.2523 -5.1121 23 1 9.9188 -1.7765 -5.4585 24 6 8.7997 -3.6014 -5.3595 25 7 7.6357 -4.1464 -5.0759 26 14 10.1645 -4.6436 -6.0949 27 1 10.9094 -5.3242 -5.0053 28 1 9.5761 -5.6609 -7.0026 29 1 11.0930 -3.7742 -6.8613 30 6 7.9852 -0.0516 -4.3006 31 6 7.5603 0.1864 -2.8355 32 1 8.2506 0.7311 -2.1913 33 1 -0.3633 0.4270 0.9348 34 1 -0.3634 -1.0231 -0.0975 35 1 -0.3634 0.5960 -0.8371 36 1 1.8933 -0.5138 0.8900 37 1 1.8933 -0.5138 -0.8900 38 1 0.5229 2.0225 1.4153 39 1 2.1154 1.6922 2.1385 40 1 3.7443 3.4029 2.3372 41 1 4.3051 5.7965 2.1991 42 1 2.8081 7.3450 1.0055 43 1 0.7541 6.4984 -0.0564 44 1 0.1978 4.1033 0.0741 45 1 3.6379 0.4739 -1.8475 46 1 5.9879 1.9089 -1.2199 47 1 6.0364 0.3507 -0.3609 48 1 6.0038 -1.9458 -4.2320 49 1 7.0891 -3.0675 -3.3542 50 1 7.4867 -5.0891 -5.2484 51 1 7.2333 0.3440 -4.9834 52 1 8.9548 0.4072 -4.4944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725314014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:27 Heat of formation + Delta-G solvation = 31.305757 kcal Electronic energy + Delta-G solvation = -29229.739706 eV Core-core repulsion = 25388.132408 eV Total energy + Delta-G solvation = -3841.607298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.39048 -39.09594 -38.55143 -35.88882 -34.95478 -33.36392 -32.19063 -30.93359 -30.84881 -28.91204 -27.34619 -26.98341 -25.53704 -24.44455 -22.65253 -22.06259 -21.43933 -21.07508 -20.36225 -19.46657 -19.25290 -17.33395 -17.03857 -16.82722 -15.98936 -15.68502 -15.17714 -15.02215 -14.82304 -14.58996 -14.41141 -13.99930 -13.94304 -13.51560 -13.28986 -13.21605 -12.89427 -12.86557 -12.71207 -12.66712 -12.44108 -12.11416 -11.84079 -11.82496 -11.47074 -11.25687 -11.09018 -11.05350 -10.95881 -10.87691 -10.85783 -10.65774 -10.23792 -10.12847 -9.77599 -9.74745 -9.40249 -9.09855 -8.97711 -8.89790 -8.70501 -8.66444 -6.90948 -5.80608 -3.15580 1.26171 1.37560 2.64985 3.16046 3.36736 3.42166 3.44092 3.70731 4.17236 4.43954 4.44797 4.50138 4.58609 4.78954 4.86605 4.91599 4.93344 5.01815 5.10303 5.13566 5.21352 5.34189 5.36698 5.39622 5.42916 5.44610 5.47461 5.52353 5.63874 5.67890 5.73240 5.78602 5.82731 5.92561 5.93125 5.94478 5.95822 6.00729 6.05989 6.12478 6.37216 6.40251 6.49603 6.56438 6.63057 6.65681 6.72458 6.89890 6.96642 7.33019 7.51782 7.52794 7.70836 8.20022 8.25134 9.09627 9.71914 10.48043 11.32427 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002011 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.231591 B =13921.380357 C =14916.968483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.102 4.102 4 H 0.097 0.903 5 C -0.063 4.063 6 C -0.085 4.085 7 C -0.080 4.080 8 C -0.129 4.129 9 C -0.125 4.125 10 C -0.130 4.130 11 C -0.121 4.121 12 C 0.515 3.485 13 O -0.537 6.537 14 N -0.724 5.724 15 C 0.156 3.844 16 C -0.153 4.153 17 H 0.101 0.899 18 C -0.169 4.169 19 H 0.105 0.895 20 C 0.183 3.817 21 N -0.595 5.595 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.914 3.086 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.154 3.846 31 C -0.166 4.166 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.401 0.599 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.024 0.976 49 H 0.095 0.905 50 H 0.254 0.746 51 H 0.024 0.976 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 15.098 12.869 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.124 4.124 4 H 0.115 0.885 5 C -0.100 4.100 6 C -0.085 4.085 7 C -0.098 4.098 8 C -0.147 4.147 9 C -0.143 4.143 10 C -0.148 4.148 11 C -0.139 4.139 12 C 0.301 3.699 13 O -0.414 6.414 14 N -0.375 5.375 15 C 0.033 3.967 16 C -0.172 4.172 17 H 0.119 0.881 18 C -0.189 4.189 19 H 0.123 0.877 20 C 0.057 3.943 21 N -0.318 5.318 22 C -0.352 4.352 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.565 5.565 26 Si 0.744 3.256 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.205 1.205 30 C 0.028 3.972 31 C -0.187 4.187 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.235 0.765 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.113 0.887 50 H 0.064 0.936 51 H 0.042 0.958 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.033 15.204 13.362 25.821 hybrid contribution 0.525 -0.627 -0.809 1.150 sum -15.508 14.577 12.553 24.709 Atomic orbital electron populations 1.21833 0.94966 1.02153 1.02079 1.21537 0.96658 0.94083 1.03266 1.21420 0.92379 0.98147 1.00417 0.88533 1.20499 1.01321 0.91186 0.97029 1.19809 0.95303 0.95167 0.98268 1.21306 0.95606 0.94919 0.97934 1.21202 0.99531 0.93923 1.00009 1.21122 0.95154 0.99495 0.98552 1.21044 0.97553 0.95586 1.00607 1.21003 0.99541 0.93460 0.99861 1.20568 0.90147 0.77537 0.81635 1.90646 1.67331 1.44828 1.38639 1.46062 1.07877 1.59545 1.24017 1.20826 0.79165 1.00187 0.96553 1.22549 0.95079 1.01895 0.97708 0.88061 1.25101 1.02298 0.90194 1.01266 0.87730 1.21743 0.89207 0.97455 0.85900 1.45173 1.30040 0.99036 1.57597 1.19045 0.96491 0.91405 1.28282 0.90448 1.24869 0.97014 0.97553 1.01025 1.69857 1.21327 1.12059 1.53232 0.86068 0.80877 0.80137 0.78496 1.21538 1.21662 1.20507 1.21158 0.98026 0.87239 0.90783 1.23783 0.92222 1.02773 0.99912 0.88038 0.92306 0.92240 0.92439 0.91133 0.91002 0.90133 0.90182 0.84911 0.86474 0.86608 0.86519 0.86502 0.76486 0.91574 0.91565 0.95838 0.88723 0.93573 0.95784 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.50 37.16 0.35 -0.54 16 2 C -0.12 -0.86 5.35 -26.73 -0.14 -1.00 16 3 C -0.10 -0.88 2.19 -91.77 -0.20 -1.08 16 4 H 0.10 0.76 8.13 -51.93 -0.42 0.33 16 5 C -0.06 -0.55 4.44 -27.88 -0.12 -0.67 16 6 C -0.09 -0.89 4.72 -104.62 -0.49 -1.38 16 7 C -0.08 -0.93 8.01 -39.58 -0.32 -1.25 16 8 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 9 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 10 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 11 C -0.12 -1.13 9.73 -39.59 -0.39 -1.51 16 12 C 0.51 6.11 6.92 -10.99 -0.08 6.03 16 13 O -0.54 -7.91 12.46 5.55 0.07 -7.84 16 14 N -0.72 -8.34 5.43 -60.30 -0.33 -8.67 16 15 C 0.16 2.10 5.95 -4.05 -0.02 2.08 16 16 C -0.15 -2.33 5.34 -90.62 -0.48 -2.82 16 17 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 18 C -0.17 -3.13 7.03 -87.38 -0.61 -3.75 16 19 H 0.10 1.87 8.12 -51.93 -0.42 1.45 16 20 C 0.18 4.32 5.83 -0.57 0.00 4.32 16 21 N -0.60 -15.16 3.39 -166.73 -0.56 -15.73 16 22 C -0.22 -6.22 10.37 -15.06 -0.16 -6.37 16 23 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 24 C -0.01 -0.22 5.43 -17.43 -0.09 -0.32 16 25 N -0.92 -26.58 10.69 55.49 0.59 -25.99 16 26 Si 0.91 21.84 29.56 -169.99 -5.02 16.81 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.15 3.22 7.04 -2.41 -0.02 3.20 16 31 C -0.17 -2.94 6.77 -89.22 -0.60 -3.55 16 32 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.06 0.31 6.63 -51.92 -0.34 -0.03 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.08 0.55 6.28 -51.93 -0.33 0.22 16 39 H 0.08 0.77 7.74 -51.93 -0.40 0.37 16 40 H 0.13 1.67 6.67 -52.49 -0.35 1.32 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.40 3.89 7.78 -40.82 -0.32 3.57 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 2.52 6.29 -51.93 -0.33 2.20 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 412.21 15.07 6.21 6.21 Total: -1.00 -31.45 412.21 -12.37 -43.82 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.75 Total: 4.99 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -4.58 Total: -13.61 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.30 Total: -50.38 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.07 Total: -7.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.45 -12.37 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.123 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds