Wall clock time and date at job start Wed Apr 1 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47129 * 2 1 4 4 H 1.09004 * 109.46886 * 303.31985 * 3 2 1 5 5 C 1.53005 * 109.46905 * 63.31765 * 3 2 1 6 6 C 1.50706 * 109.47072 * 187.50940 * 5 3 2 7 7 C 1.38231 * 119.99587 * 261.77793 * 6 5 3 8 8 C 1.38242 * 119.99400 * 179.78856 * 7 6 5 9 9 C 1.38231 * 120.00134 * 0.43857 * 8 7 6 10 10 C 1.38241 * 120.00050 * 359.81371 * 9 8 7 11 11 C 1.38230 * 119.99556 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47274 * 183.31946 * 3 2 1 13 13 O 1.21287 * 119.99780 * 239.99798 * 12 3 2 14 14 N 1.34778 * 120.00390 * 59.99821 * 12 3 2 15 15 C 1.46498 * 120.00237 * 179.97438 * 14 12 3 16 16 C 1.52995 * 109.47138 * 180.02562 * 15 14 12 17 17 H 1.08998 * 115.51447 * 29.58646 * 16 15 14 18 18 C 1.52998 * 117.44429 * 244.24021 * 16 15 14 19 19 H 1.09003 * 119.53865 * 4.11817 * 18 16 15 20 20 C 1.57697 * 116.11302 * 161.63636 * 18 16 15 21 21 N 1.48144 * 104.66966 * 87.31101 * 20 18 16 22 22 C 1.36938 * 127.83534 * 139.77726 * 21 20 18 23 23 H 1.08003 * 119.99907 * 193.23371 * 22 21 20 24 24 C 1.38813 * 119.99788 * 13.24312 * 22 21 20 25 25 N 1.31611 * 120.00740 * 7.79785 * 24 22 21 26 26 Si 1.86808 * 119.99681 * 187.79922 * 24 22 21 27 27 H 1.48504 * 109.46826 * 94.97720 * 26 24 22 28 28 H 1.48492 * 109.47292 * 214.97766 * 26 24 22 29 29 H 1.48506 * 109.47284 * 334.98155 * 26 24 22 30 30 C 1.48143 * 104.32660 * 319.77002 * 21 20 18 31 31 C 1.52998 * 117.44274 * 175.00247 * 16 15 14 32 32 H 1.09003 * 119.54008 * 355.87665 * 31 16 15 33 33 H 1.09008 * 109.46895 * 294.54992 * 1 2 3 34 34 H 1.09005 * 109.47253 * 174.55642 * 1 2 3 35 35 H 1.08999 * 109.47518 * 54.55192 * 1 2 3 36 36 H 1.08997 * 109.47437 * 119.99811 * 2 1 3 37 37 H 1.09002 * 109.47314 * 240.00046 * 2 1 3 38 38 H 1.08996 * 109.47327 * 307.50828 * 5 3 2 39 39 H 1.08996 * 109.47372 * 67.51215 * 5 3 2 40 40 H 1.08000 * 120.00527 * 359.97438 * 7 6 5 41 41 H 1.07997 * 119.99703 * 180.27718 * 8 7 6 42 42 H 1.08003 * 120.00286 * 179.83734 * 9 8 7 43 43 H 1.07997 * 119.99797 * 179.97438 * 10 9 8 44 44 H 1.08007 * 119.99531 * 179.97438 * 11 10 9 45 45 H 0.97001 * 119.99456 * 0.02562 * 14 12 3 46 46 H 1.09004 * 109.46995 * 300.00233 * 15 14 12 47 47 H 1.08996 * 109.46992 * 59.99982 * 15 14 12 48 48 H 1.09000 * 110.91988 * 328.23059 * 20 18 16 49 49 H 1.09003 * 109.83537 * 205.84258 * 20 18 16 50 50 H 0.96996 * 120.00381 * 180.02562 * 25 24 22 51 51 H 1.08990 * 110.41233 * 280.80767 * 30 21 20 52 52 H 1.09002 * 110.40956 * 158.36839 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6288 1.9732 -0.8588 5 6 1.5992 2.1393 1.2889 6 6 1.9396 3.6052 1.2092 7 6 3.0898 4.0813 1.8102 8 6 3.4042 5.4253 1.7334 9 6 2.5638 6.2945 1.0633 10 6 1.4109 5.8192 0.4667 11 6 1.0988 4.4746 0.5399 12 6 3.5447 1.4434 -0.0823 13 8 4.2001 1.9513 0.8029 14 7 4.1622 0.8797 -1.1394 15 6 5.6249 0.8811 -1.2196 16 6 6.0656 0.1848 -2.5087 17 1 5.3688 0.2579 -3.3437 18 6 6.8669 -1.1114 -2.3716 19 1 7.0407 -1.5336 -1.3818 20 6 6.9218 -2.0321 -3.6507 21 7 8.0757 -1.5247 -4.4289 22 6 9.0133 -2.2523 -5.1121 23 1 9.9188 -1.7765 -5.4585 24 6 8.7997 -3.6014 -5.3595 25 7 7.6357 -4.1464 -5.0759 26 14 10.1645 -4.6436 -6.0949 27 1 10.9094 -5.3242 -5.0053 28 1 9.5761 -5.6609 -7.0026 29 1 11.0930 -3.7742 -6.8613 30 6 7.9852 -0.0516 -4.3006 31 6 7.5603 0.1864 -2.8355 32 1 8.2506 0.7311 -2.1913 33 1 -0.3633 0.4270 0.9348 34 1 -0.3634 -1.0231 -0.0975 35 1 -0.3634 0.5960 -0.8371 36 1 1.8933 -0.5138 0.8900 37 1 1.8933 -0.5138 -0.8900 38 1 0.5229 2.0225 1.4153 39 1 2.1154 1.6922 2.1385 40 1 3.7443 3.4029 2.3372 41 1 4.3051 5.7965 2.1991 42 1 2.8081 7.3450 1.0055 43 1 0.7541 6.4984 -0.0564 44 1 0.1978 4.1033 0.0741 45 1 3.6379 0.4739 -1.8475 46 1 5.9879 1.9089 -1.2199 47 1 6.0364 0.3507 -0.3609 48 1 6.0038 -1.9458 -4.2320 49 1 7.0891 -3.0675 -3.3542 50 1 7.4867 -5.0891 -5.2484 51 1 7.2333 0.3440 -4.9834 52 1 8.9548 0.4072 -4.4944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725314014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:26 Heat of formation + Delta-G solvation = 15.655082 kcal Electronic energy + Delta-G solvation = -29230.418370 eV Core-core repulsion = 25388.132408 eV Total energy + Delta-G solvation = -3842.285962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.28375 -40.33668 -39.62753 -36.66482 -36.24530 -34.97299 -32.96128 -32.60374 -31.65400 -29.73622 -28.75470 -28.60209 -26.92326 -25.53290 -23.38596 -22.99394 -22.60275 -22.14873 -21.68338 -20.87727 -20.41765 -18.84748 -18.20398 -17.77938 -17.09267 -16.74561 -16.44536 -16.04252 -15.97174 -15.69604 -15.31988 -15.23208 -15.03374 -14.69761 -14.56741 -14.34423 -14.13261 -13.98825 -13.62042 -13.47383 -13.36268 -13.18317 -13.07390 -12.88186 -12.77108 -12.73272 -12.49020 -12.30197 -12.08799 -11.93037 -11.91442 -11.74964 -11.68041 -11.60741 -11.52824 -10.95365 -10.84531 -10.64562 -10.47823 -9.98037 -9.69321 -9.45378 -8.93175 -7.90701 -5.27744 0.52904 0.62130 1.45914 1.47537 1.56667 1.73753 2.18741 2.47461 2.77432 2.96483 3.26075 3.61186 3.69792 3.74634 3.79000 3.86213 3.93536 4.12535 4.19155 4.21565 4.26675 4.28347 4.39373 4.39759 4.41338 4.49466 4.52463 4.62795 4.68363 4.72868 4.73988 4.79048 4.88508 4.92371 4.98592 5.00615 5.08720 5.20748 5.23167 5.25500 5.29740 5.33833 5.35465 5.43703 5.50100 5.51253 5.53405 5.66429 5.68435 5.73769 5.88554 6.18847 6.23944 6.62186 7.01413 7.34034 7.67950 8.45377 9.21429 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002011 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.231591 B =13921.380357 C =14916.968483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.092 4.092 4 H 0.113 0.887 5 C -0.059 4.059 6 C -0.094 4.094 7 C -0.102 4.102 8 C -0.145 4.145 9 C -0.134 4.134 10 C -0.134 4.134 11 C -0.123 4.123 12 C 0.509 3.491 13 O -0.568 6.568 14 N -0.720 5.720 15 C 0.166 3.834 16 C -0.112 4.112 17 H 0.108 0.892 18 C -0.176 4.176 19 H 0.113 0.887 20 C 0.187 3.813 21 N -0.621 5.621 22 C -0.239 4.239 23 H 0.081 0.919 24 C -0.064 4.064 25 N -0.947 5.947 26 Si 0.980 3.020 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.267 1.267 30 C 0.149 3.851 31 C -0.162 4.162 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.411 0.589 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.007 0.993 49 H 0.057 0.943 50 H 0.250 0.750 51 H 0.028 0.972 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 16.587 12.693 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.113 4.113 4 H 0.131 0.869 5 C -0.097 4.097 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.152 4.152 11 C -0.141 4.141 12 C 0.297 3.703 13 O -0.447 6.447 14 N -0.372 5.372 15 C 0.042 3.958 16 C -0.131 4.131 17 H 0.126 0.874 18 C -0.196 4.196 19 H 0.131 0.869 20 C 0.061 3.939 21 N -0.345 5.345 22 C -0.368 4.368 23 H 0.098 0.902 24 C -0.258 4.258 25 N -0.595 5.595 26 Si 0.808 3.192 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.192 1.192 30 C 0.024 3.976 31 C -0.183 4.183 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.248 0.752 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.025 0.975 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.046 0.954 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.493 16.720 13.184 27.557 hybrid contribution 0.960 -1.025 -0.747 1.590 sum -16.533 15.695 12.438 25.969 Atomic orbital electron populations 1.21822 0.93483 1.02599 1.02863 1.21525 0.97873 0.92937 1.02906 1.21405 0.89730 0.99184 1.00946 0.86927 1.20511 1.02535 0.90174 0.96460 1.20011 0.95023 0.96183 0.98217 1.21287 0.96432 0.95149 0.99163 1.21377 1.00258 0.93990 1.00723 1.21397 0.95243 1.00308 0.98248 1.21415 0.97526 0.96139 1.00113 1.21314 1.00052 0.93406 0.99344 1.21208 0.91558 0.76620 0.80916 1.90655 1.68298 1.46036 1.39681 1.45999 1.07066 1.59617 1.24508 1.20593 0.80507 0.99710 0.94954 1.22442 0.93731 0.98364 0.98539 0.87396 1.24769 1.05442 0.90084 0.99338 0.86917 1.21491 0.88088 0.96686 0.87655 1.45482 1.29996 1.01136 1.57931 1.19410 0.97164 0.92070 1.28109 0.90153 1.25705 0.99252 0.98746 1.02079 1.70057 1.23099 1.11899 1.54486 0.85038 0.78261 0.78299 0.77591 1.21427 1.21937 1.19173 1.21301 0.98637 0.84791 0.92859 1.23719 0.94358 1.02188 0.97989 0.86066 0.91663 0.92076 0.91446 0.92110 0.90837 0.87710 0.91775 0.86930 0.86099 0.84824 0.84151 0.83959 0.75236 0.91412 0.92268 0.97509 0.92433 0.94104 0.95428 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.50 71.98 0.68 -0.67 16 2 C -0.11 -1.44 5.35 30.59 0.16 -1.28 16 3 C -0.09 -1.39 2.19 -11.54 -0.03 -1.41 16 4 H 0.11 1.40 8.13 -2.38 -0.02 1.38 16 5 C -0.06 -0.94 4.44 29.85 0.13 -0.81 16 6 C -0.09 -1.84 4.72 -19.87 -0.09 -1.93 16 7 C -0.10 -2.41 8.01 22.27 0.18 -2.24 16 8 C -0.15 -3.12 10.05 22.27 0.22 -2.90 16 9 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 10 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 11 C -0.12 -1.99 9.73 22.27 0.22 -1.77 16 12 C 0.51 11.46 6.92 87.65 0.61 12.07 16 13 O -0.57 -16.61 12.46 -3.05 -0.04 -16.65 16 14 N -0.72 -15.30 5.43 -463.07 -2.51 -17.81 16 15 C 0.17 4.18 5.95 86.38 0.51 4.70 16 16 C -0.11 -3.20 5.34 -10.80 -0.06 -3.26 16 17 H 0.11 3.03 8.04 -2.39 -0.02 3.01 16 18 C -0.18 -6.47 7.03 -8.70 -0.06 -6.53 16 19 H 0.11 3.96 8.12 -2.39 -0.02 3.94 16 20 C 0.19 9.04 5.83 87.73 0.51 9.55 16 21 N -0.62 -32.08 3.39 -681.40 -2.31 -34.38 16 22 C -0.24 -13.42 10.37 84.03 0.87 -12.54 16 23 H 0.08 4.33 7.84 -2.91 -0.02 4.30 16 24 C -0.06 -3.65 5.43 84.86 0.46 -3.19 16 25 N -0.95 -56.47 10.69 21.65 0.23 -56.24 16 26 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 C 0.15 6.12 7.04 86.54 0.61 6.73 16 31 C -0.16 -5.49 6.77 -9.89 -0.07 -5.56 16 32 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.06 0.51 6.63 -2.38 -0.02 0.49 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.91 7.47 -2.39 -0.02 0.89 16 38 H 0.10 1.13 6.28 -2.39 -0.02 1.12 16 39 H 0.06 1.23 7.74 -2.39 -0.02 1.21 16 40 H 0.11 3.03 6.67 -2.91 -0.02 3.01 16 41 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.41 7.04 7.78 -92.71 -0.72 6.32 16 46 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 48 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.06 3.20 6.29 -2.39 -0.02 3.19 16 50 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -69.94 412.21 2.89 -67.05 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.18 Total: 25.74 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.31 Total: -15.18 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.59 Total: -108.43 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.04 Total: -16.65 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.94 2.89 -67.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.703 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds