Wall clock time and date at job start Wed Apr 1 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47442 * 2 1 4 4 C 1.53001 * 109.47230 * 120.00426 * 2 1 3 5 5 H 1.08994 * 109.46897 * 295.61091 * 4 2 1 6 6 C 1.50707 * 109.47071 * 175.61278 * 4 2 1 7 7 O 1.21281 * 119.99600 * 328.56324 * 6 4 2 8 8 N 1.34774 * 119.99960 * 148.29360 * 6 4 2 9 9 C 1.46501 * 120.00144 * 175.37472 * 8 6 4 10 10 C 1.52996 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 115.51435 * 330.41114 * 10 9 8 12 12 C 1.53004 * 117.44267 * 184.99989 * 10 9 8 13 13 H 1.09004 * 119.53393 * 4.11620 * 12 10 9 14 14 C 1.54385 * 118.12411 * 160.80579 * 12 10 9 15 15 N 1.48145 * 104.61643 * 87.19140 * 14 12 10 16 16 C 1.36932 * 127.83572 * 140.39108 * 15 14 12 17 17 H 1.08000 * 119.99904 * 199.27185 * 16 15 14 18 18 C 1.38815 * 120.00297 * 19.28154 * 16 15 14 19 19 N 1.31617 * 119.99719 * 356.53309 * 18 16 15 20 20 Si 1.86795 * 120.00094 * 176.53854 * 18 16 15 21 21 H 1.48497 * 109.47261 * 89.99819 * 20 18 16 22 22 H 1.48504 * 109.47169 * 209.99428 * 20 18 16 23 23 H 1.48501 * 109.47397 * 329.99410 * 20 18 16 24 24 C 1.48149 * 104.32343 * 320.41547 * 15 14 12 25 25 C 1.52995 * 117.44374 * 115.76199 * 10 9 8 26 26 H 1.09005 * 119.54077 * 355.87626 * 25 10 9 27 27 C 1.50701 * 109.47102 * 55.61279 * 4 2 1 28 28 C 1.38225 * 120.00086 * 59.72609 * 27 4 2 29 29 C 1.38237 * 119.99953 * 179.78867 * 28 27 4 30 30 C 1.38236 * 119.99745 * 0.46299 * 29 28 27 31 31 C 1.38234 * 120.00090 * 359.76621 * 30 29 28 32 32 C 1.38230 * 119.99423 * 239.99869 * 27 4 2 33 33 H 1.09004 * 109.46925 * 300.00114 * 1 2 3 34 34 H 1.09003 * 109.47047 * 59.99547 * 1 2 3 35 35 H 1.08994 * 109.47260 * 179.97438 * 1 2 3 36 36 H 1.09004 * 109.46925 * 239.99886 * 2 1 3 37 37 H 1.08998 * 109.47157 * 66.39620 * 3 2 1 38 38 H 1.09000 * 109.47399 * 186.39834 * 3 2 1 39 39 H 1.09000 * 109.47058 * 306.39522 * 3 2 1 40 40 H 0.96998 * 120.00112 * 355.37439 * 8 6 4 41 41 H 1.09002 * 109.46674 * 300.00063 * 9 8 6 42 42 H 1.08999 * 109.46626 * 59.99815 * 9 8 6 43 43 H 1.09000 * 110.40794 * 205.97987 * 14 12 10 44 44 H 1.09002 * 110.40826 * 328.40419 * 14 12 10 45 45 H 0.96999 * 120.00059 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.40107 * 280.79861 * 24 15 14 47 47 H 1.09004 * 110.50239 * 158.42015 * 24 15 14 48 48 H 1.07999 * 120.00132 * 359.97438 * 28 27 4 49 49 H 1.08003 * 120.00295 * 180.25888 * 29 28 27 50 50 H 1.08000 * 119.99783 * 179.79489 * 30 29 28 51 51 H 1.07997 * 120.00159 * 179.97438 * 31 30 29 52 52 H 1.07998 * 120.00652 * 359.97438 * 32 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7423 -0.1642 2.1374 6 6 3.5431 -0.8161 1.1960 7 8 4.1075 -0.9061 0.1263 8 7 4.2604 -0.7955 2.3368 9 6 5.7119 -0.9893 2.2931 10 6 6.2784 -0.9217 3.7127 11 1 5.7278 -0.2883 4.4083 12 6 7.7992 -0.9847 3.8688 13 1 8.4301 -1.0062 2.9802 14 6 8.4168 -0.4770 5.1895 15 7 8.3906 -1.6526 6.0906 16 6 9.3503 -2.0477 6.9839 17 1 9.3621 -3.0639 7.3494 18 6 10.3079 -1.1422 7.4198 19 7 10.3353 0.0765 6.9234 20 14 11.5576 -1.6533 8.7106 21 1 12.7564 -2.2198 8.0421 22 1 11.9525 -0.4683 9.5138 23 1 10.9575 -2.6780 9.6023 24 6 7.0909 -2.3040 5.8056 25 6 6.9249 -2.1892 4.2750 26 1 6.9046 -3.1082 3.6891 27 6 1.4509 -2.1073 1.3046 28 6 1.6883 -3.0008 0.2771 29 6 1.1515 -4.2736 0.3300 30 6 0.3694 -4.6496 1.4061 31 6 0.1281 -3.7545 2.4314 32 6 0.6685 -2.4831 2.3805 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.7732 1.9222 0.9417 38 1 3.1240 1.4446 -0.1145 39 1 1.5863 1.9883 -0.8272 40 1 3.8157 -0.6524 3.1868 41 1 5.9354 -1.9639 1.8591 42 1 6.1645 -0.2075 1.6832 43 1 9.4424 -0.1456 5.0268 44 1 7.8160 0.3328 5.6035 45 1 11.0046 0.7091 7.2276 46 1 6.2831 -1.7795 6.3160 47 1 7.1141 -3.3510 6.1081 48 1 2.2956 -2.7056 -0.5658 49 1 1.3404 -4.9732 -0.4708 50 1 -0.0527 -5.6429 1.4459 51 1 -0.4832 -4.0481 3.2719 52 1 0.4797 -1.7837 3.1814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725314922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:54 Heat of formation + Delta-G solvation = 30.350199 kcal Electronic energy + Delta-G solvation = -29488.138408 eV Core-core repulsion = 25646.489674 eV Total energy + Delta-G solvation = -3841.648734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70792 -39.15275 -38.58560 -36.15349 -34.90185 -33.34571 -31.84207 -31.12217 -30.83737 -28.38899 -27.25815 -27.11175 -26.60423 -24.72070 -22.95898 -22.07608 -21.31947 -21.06919 -20.17828 -19.42417 -19.21494 -17.37872 -17.17827 -16.81831 -16.08322 -15.81501 -15.09094 -15.02096 -14.92057 -14.58890 -14.35804 -14.17998 -13.79427 -13.65152 -13.47429 -13.12138 -12.91118 -12.75419 -12.70173 -12.66317 -12.48766 -12.36130 -11.83018 -11.75871 -11.40488 -11.28929 -11.21875 -11.07700 -10.98051 -10.88264 -10.83771 -10.64363 -10.28471 -10.14915 -10.01140 -9.81010 -9.38747 -9.15719 -9.14920 -8.90416 -8.88573 -8.62459 -6.84272 -5.80667 -3.18797 1.05704 1.17172 2.57714 3.09747 3.36826 3.42276 3.44250 3.54897 4.14662 4.34851 4.42326 4.45275 4.57200 4.73318 4.78193 4.81840 4.90475 4.93800 5.07826 5.11847 5.28055 5.31138 5.34469 5.38763 5.40010 5.43827 5.45457 5.51677 5.60441 5.64522 5.74705 5.81303 5.81535 5.86942 5.91068 5.93231 5.98186 6.06790 6.08832 6.21910 6.24860 6.29176 6.34106 6.39058 6.56961 6.66565 6.72077 6.74686 6.92831 7.36005 7.47411 7.57427 7.72725 8.16873 8.23942 9.10601 9.72224 10.50619 11.31897 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.002140 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.026138 B =13082.511983 C =14081.024133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.062 4.062 5 H 0.095 0.905 6 C 0.523 3.477 7 O -0.539 6.539 8 N -0.721 5.721 9 C 0.155 3.845 10 C -0.150 4.150 11 H 0.102 0.898 12 C -0.161 4.161 13 H 0.102 0.898 14 C 0.180 3.820 15 N -0.595 5.595 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.915 5.915 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.155 3.845 25 C -0.172 4.172 26 H 0.101 0.899 27 C -0.071 4.071 28 C -0.105 4.105 29 C -0.119 4.119 30 C -0.121 4.121 31 C -0.119 4.119 32 C -0.111 4.111 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.021 0.979 45 H 0.255 0.745 46 H 0.024 0.976 47 H 0.049 0.951 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 -2.365 -13.309 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.084 4.084 5 H 0.113 0.887 6 C 0.309 3.691 7 O -0.416 6.416 8 N -0.372 5.372 9 C 0.032 3.968 10 C -0.169 4.169 11 H 0.120 0.880 12 C -0.182 4.182 13 H 0.120 0.880 14 C 0.054 3.946 15 N -0.318 5.318 16 C -0.356 4.356 17 H 0.093 0.907 18 C -0.201 4.201 19 N -0.561 5.561 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.028 3.972 25 C -0.192 4.192 26 H 0.119 0.881 27 C -0.072 4.072 28 C -0.123 4.123 29 C -0.137 4.137 30 C -0.139 4.139 31 C -0.137 4.137 32 C -0.129 4.129 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.067 0.933 48 H 0.145 0.855 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.634 -2.367 -13.894 26.664 hybrid contribution 0.478 -0.245 1.104 1.228 sum -22.157 -2.612 -12.790 25.716 Atomic orbital electron populations 1.21854 0.94564 1.02095 1.01782 1.20985 0.95691 0.96088 0.96662 1.21887 1.01876 0.95281 1.01792 1.20417 0.91882 0.94570 1.01509 0.88656 1.20351 0.88954 0.75835 0.84009 1.90682 1.72359 1.49486 1.29099 1.46078 1.08651 1.73169 1.09314 1.20870 0.78783 1.01523 0.95659 1.22525 0.96896 1.01823 0.95655 0.88021 1.24282 0.89757 1.02388 1.01753 0.87969 1.21198 1.00937 0.88800 0.83648 1.45176 1.14536 1.28321 1.43776 1.18987 1.05302 0.94717 1.16584 0.90654 1.24991 1.00297 0.95338 0.99431 1.69836 1.36658 1.04846 1.44806 0.86118 0.80996 0.77306 0.81345 1.21478 1.21516 1.20534 1.21138 0.89361 0.96847 0.89826 1.23994 1.05197 0.91661 0.98381 0.88065 1.19362 0.98403 0.94134 0.95276 1.21135 0.99145 0.93403 0.98617 1.21160 0.97768 0.96242 0.98519 1.21183 0.98750 0.99570 0.94367 1.21122 1.00146 0.93713 0.98763 1.21052 0.97637 0.96669 0.97540 0.92661 0.92464 0.92305 0.89716 0.92739 0.92087 0.92262 0.76479 0.91629 0.91107 0.88401 0.96134 0.93494 0.95843 0.93277 0.85540 0.86056 0.86164 0.85968 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.88 37.16 0.33 -0.72 16 2 C -0.08 -0.66 1.98 -90.62 -0.18 -0.84 16 3 C -0.15 -1.32 8.88 37.16 0.33 -0.99 16 4 C -0.06 -0.57 1.96 -92.92 -0.18 -0.75 16 5 H 0.10 0.70 7.86 -51.93 -0.41 0.29 16 6 C 0.52 6.36 5.70 -10.98 -0.06 6.30 16 7 O -0.54 -8.32 15.37 5.56 0.09 -8.24 16 8 N -0.72 -8.41 5.55 -60.29 -0.33 -8.75 16 9 C 0.15 2.12 5.96 -4.04 -0.02 2.10 16 10 C -0.15 -2.31 5.39 -90.62 -0.49 -2.79 16 11 H 0.10 1.54 8.04 -51.93 -0.42 1.13 16 12 C -0.16 -3.06 6.85 -89.22 -0.61 -3.67 16 13 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 14 C 0.18 4.31 5.75 -2.41 -0.01 4.29 16 15 N -0.59 -15.24 3.38 -168.86 -0.57 -15.81 16 16 C -0.23 -6.34 10.35 -15.06 -0.16 -6.50 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 19 N -0.92 -26.63 10.65 55.49 0.59 -26.04 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 3.23 7.04 -2.41 -0.02 3.21 16 25 C -0.17 -3.06 6.74 -89.22 -0.60 -3.67 16 26 H 0.10 1.69 8.12 -51.93 -0.42 1.27 16 27 C -0.07 -0.67 3.30 -104.63 -0.35 -1.02 16 28 C -0.11 -1.07 8.85 -39.59 -0.35 -1.42 16 29 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 30 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 31 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 32 C -0.11 -0.92 9.67 -39.58 -0.38 -1.31 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.46 7.08 -51.93 -0.37 0.09 16 36 H 0.08 0.88 7.08 -51.93 -0.37 0.51 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.65 7.24 -51.93 -0.38 0.28 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 3.84 8.39 -40.82 -0.34 3.50 16 41 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.10 2.64 6.34 -51.93 -0.33 2.31 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.13 1.38 7.30 -52.49 -0.38 1.00 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 50 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 52 H 0.12 0.79 7.95 -52.49 -0.42 0.38 16 LS Contribution 415.69 15.07 6.26 6.26 Total: -1.00 -31.66 415.69 -11.90 -43.56 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.86 Total: 4.38 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -4.04 Total: -12.18 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.32 Total: -50.60 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.66 -11.90 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.909 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds