Wall clock time and date at job start Wed Apr 1 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47442 * 2 1 4 4 C 1.53001 * 109.47230 * 120.00426 * 2 1 3 5 5 H 1.08994 * 109.46897 * 295.61091 * 4 2 1 6 6 C 1.50707 * 109.47071 * 175.61278 * 4 2 1 7 7 O 1.21281 * 119.99600 * 328.56324 * 6 4 2 8 8 N 1.34774 * 119.99960 * 148.29360 * 6 4 2 9 9 C 1.46501 * 120.00144 * 175.37472 * 8 6 4 10 10 C 1.52996 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09003 * 115.51435 * 330.41114 * 10 9 8 12 12 C 1.53004 * 117.44267 * 184.99989 * 10 9 8 13 13 H 1.09004 * 119.53393 * 4.11620 * 12 10 9 14 14 C 1.54385 * 118.12411 * 160.80579 * 12 10 9 15 15 N 1.48145 * 104.61643 * 87.19140 * 14 12 10 16 16 C 1.36932 * 127.83572 * 140.39108 * 15 14 12 17 17 H 1.08000 * 119.99904 * 199.27185 * 16 15 14 18 18 C 1.38815 * 120.00297 * 19.28154 * 16 15 14 19 19 N 1.31617 * 119.99719 * 356.53309 * 18 16 15 20 20 Si 1.86795 * 120.00094 * 176.53854 * 18 16 15 21 21 H 1.48497 * 109.47261 * 89.99819 * 20 18 16 22 22 H 1.48504 * 109.47169 * 209.99428 * 20 18 16 23 23 H 1.48501 * 109.47397 * 329.99410 * 20 18 16 24 24 C 1.48149 * 104.32343 * 320.41547 * 15 14 12 25 25 C 1.52995 * 117.44374 * 115.76199 * 10 9 8 26 26 H 1.09005 * 119.54077 * 355.87626 * 25 10 9 27 27 C 1.50701 * 109.47102 * 55.61279 * 4 2 1 28 28 C 1.38225 * 120.00086 * 59.72609 * 27 4 2 29 29 C 1.38237 * 119.99953 * 179.78867 * 28 27 4 30 30 C 1.38236 * 119.99745 * 0.46299 * 29 28 27 31 31 C 1.38234 * 120.00090 * 359.76621 * 30 29 28 32 32 C 1.38230 * 119.99423 * 239.99869 * 27 4 2 33 33 H 1.09004 * 109.46925 * 300.00114 * 1 2 3 34 34 H 1.09003 * 109.47047 * 59.99547 * 1 2 3 35 35 H 1.08994 * 109.47260 * 179.97438 * 1 2 3 36 36 H 1.09004 * 109.46925 * 239.99886 * 2 1 3 37 37 H 1.08998 * 109.47157 * 66.39620 * 3 2 1 38 38 H 1.09000 * 109.47399 * 186.39834 * 3 2 1 39 39 H 1.09000 * 109.47058 * 306.39522 * 3 2 1 40 40 H 0.96998 * 120.00112 * 355.37439 * 8 6 4 41 41 H 1.09002 * 109.46674 * 300.00063 * 9 8 6 42 42 H 1.08999 * 109.46626 * 59.99815 * 9 8 6 43 43 H 1.09000 * 110.40794 * 205.97987 * 14 12 10 44 44 H 1.09002 * 110.40826 * 328.40419 * 14 12 10 45 45 H 0.96999 * 120.00059 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.40107 * 280.79861 * 24 15 14 47 47 H 1.09004 * 110.50239 * 158.42015 * 24 15 14 48 48 H 1.07999 * 120.00132 * 359.97438 * 28 27 4 49 49 H 1.08003 * 120.00295 * 180.25888 * 29 28 27 50 50 H 1.08000 * 119.99783 * 179.79489 * 30 29 28 51 51 H 1.07997 * 120.00159 * 179.97438 * 31 30 29 52 52 H 1.07998 * 120.00652 * 359.97438 * 32 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7423 -0.1642 2.1374 6 6 3.5431 -0.8161 1.1960 7 8 4.1075 -0.9061 0.1263 8 7 4.2604 -0.7955 2.3368 9 6 5.7119 -0.9893 2.2931 10 6 6.2784 -0.9217 3.7127 11 1 5.7278 -0.2883 4.4083 12 6 7.7992 -0.9847 3.8688 13 1 8.4301 -1.0062 2.9802 14 6 8.4168 -0.4770 5.1895 15 7 8.3906 -1.6526 6.0906 16 6 9.3503 -2.0477 6.9839 17 1 9.3621 -3.0639 7.3494 18 6 10.3079 -1.1422 7.4198 19 7 10.3353 0.0765 6.9234 20 14 11.5576 -1.6533 8.7106 21 1 12.7564 -2.2198 8.0421 22 1 11.9525 -0.4683 9.5138 23 1 10.9575 -2.6780 9.6023 24 6 7.0909 -2.3040 5.8056 25 6 6.9249 -2.1892 4.2750 26 1 6.9046 -3.1082 3.6891 27 6 1.4509 -2.1073 1.3046 28 6 1.6883 -3.0008 0.2771 29 6 1.1515 -4.2736 0.3300 30 6 0.3694 -4.6496 1.4061 31 6 0.1281 -3.7545 2.4314 32 6 0.6685 -2.4831 2.3805 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.7732 1.9222 0.9417 38 1 3.1240 1.4446 -0.1145 39 1 1.5863 1.9883 -0.8272 40 1 3.8157 -0.6524 3.1868 41 1 5.9354 -1.9639 1.8591 42 1 6.1645 -0.2075 1.6832 43 1 9.4424 -0.1456 5.0268 44 1 7.8160 0.3328 5.6035 45 1 11.0046 0.7091 7.2276 46 1 6.2831 -1.7795 6.3160 47 1 7.1141 -3.3510 6.1081 48 1 2.2956 -2.7056 -0.5658 49 1 1.3404 -4.9732 -0.4708 50 1 -0.0527 -5.6429 1.4459 51 1 -0.4832 -4.0481 3.2719 52 1 0.4797 -1.7837 3.1814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725314922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:53 Heat of formation + Delta-G solvation = 14.008776 kcal Electronic energy + Delta-G solvation = -29488.847025 eV Core-core repulsion = 25646.489674 eV Total energy + Delta-G solvation = -3842.357351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.56121 -40.47953 -39.59433 -36.94671 -36.21385 -34.98995 -32.83616 -32.36538 -31.74841 -29.49313 -28.85876 -28.09239 -27.72429 -26.28441 -23.60071 -23.03069 -22.64741 -22.10644 -21.50535 -20.85006 -20.29938 -18.86462 -18.24592 -17.87005 -17.18319 -16.75939 -16.54734 -16.02490 -15.92709 -15.73043 -15.41438 -15.30824 -14.97382 -14.63443 -14.57791 -14.46474 -14.25267 -13.95481 -13.56734 -13.42133 -13.33364 -13.25132 -13.14942 -12.95346 -12.87527 -12.72203 -12.40345 -12.30931 -12.06078 -11.98422 -11.95859 -11.91190 -11.81974 -11.65289 -11.51653 -11.07437 -10.86220 -10.71676 -10.51948 -10.03415 -9.79139 -9.57663 -8.87212 -7.91273 -5.31723 0.40539 0.52941 1.46066 1.47576 1.56902 1.63953 2.12178 2.46684 2.72701 2.89899 3.25990 3.60722 3.66843 3.68673 3.73522 3.82173 3.86364 4.07118 4.16637 4.18627 4.21134 4.27013 4.31407 4.40558 4.42528 4.49053 4.56962 4.63172 4.66383 4.68758 4.72988 4.79345 4.82908 4.93646 5.00603 5.01549 5.02292 5.11692 5.18881 5.21309 5.25982 5.33659 5.39434 5.45134 5.45822 5.48694 5.53782 5.59965 5.66266 5.68971 5.69318 6.12899 6.21641 6.56074 7.01586 7.24069 7.67641 8.47024 9.20520 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.002140 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.026138 B =13082.511983 C =14081.024133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.055 4.055 5 H 0.122 0.878 6 C 0.522 3.478 7 O -0.576 6.576 8 N -0.715 5.715 9 C 0.165 3.835 10 C -0.107 4.107 11 H 0.111 0.889 12 C -0.177 4.177 13 H 0.109 0.891 14 C 0.186 3.814 15 N -0.621 5.621 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.061 4.061 19 N -0.946 5.946 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.267 1.267 24 C 0.150 3.850 25 C -0.163 4.163 26 H 0.119 0.881 27 C -0.079 4.079 28 C -0.124 4.124 29 C -0.131 4.131 30 C -0.126 4.126 31 C -0.123 4.123 32 C -0.112 4.112 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.002 0.998 45 H 0.250 0.750 46 H 0.031 0.969 47 H 0.055 0.945 48 H 0.107 0.893 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.145 0.855 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.775 -3.178 -12.582 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.206 4.206 4 C -0.076 4.076 5 H 0.140 0.860 6 C 0.309 3.691 7 O -0.456 6.456 8 N -0.366 5.366 9 C 0.041 3.959 10 C -0.126 4.126 11 H 0.129 0.871 12 C -0.198 4.198 13 H 0.127 0.873 14 C 0.060 3.940 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.097 0.903 18 C -0.254 4.254 19 N -0.593 5.593 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.025 3.975 25 C -0.182 4.182 26 H 0.137 0.863 27 C -0.079 4.079 28 C -0.142 4.142 29 C -0.149 4.149 30 C -0.144 4.144 31 C -0.141 4.141 32 C -0.130 4.130 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.125 0.875 49 H 0.148 0.852 50 H 0.157 0.843 51 H 0.162 0.838 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.143 -3.199 -13.161 28.559 hybrid contribution 1.195 -0.027 0.841 1.462 sum -23.948 -3.227 -12.320 27.124 Atomic orbital electron populations 1.21785 0.92975 1.02013 1.02769 1.20944 0.96873 0.95759 0.95669 1.21866 1.00220 0.95495 1.02994 1.20428 0.89327 0.95132 1.02703 0.86038 1.20899 0.90219 0.74660 0.83298 1.90670 1.73331 1.51037 1.30523 1.45968 1.07694 1.72909 1.10057 1.20621 0.80117 1.01202 0.93990 1.22405 0.94031 0.99619 0.96552 0.87080 1.23966 0.92098 1.03953 0.99767 0.87283 1.20903 0.98876 0.88350 0.85866 1.45489 1.16022 1.28957 1.44061 1.19363 1.05937 0.95051 1.16804 0.90282 1.25826 1.02539 0.95510 1.01558 1.70050 1.37432 1.05851 1.45988 0.85071 0.78504 0.76912 0.78775 1.21200 1.21854 1.19220 1.21283 0.87475 0.96806 0.91911 1.23921 1.05118 0.92721 0.96457 0.86328 1.19391 0.99045 0.93898 0.95600 1.21126 0.99937 0.94431 0.98737 1.21349 0.98072 0.96074 0.99384 1.21475 0.98252 1.00631 0.93997 1.21468 0.99917 0.93516 0.99220 1.21330 0.96893 0.97301 0.97500 0.91213 0.91929 0.92876 0.92065 0.91212 0.94576 0.91430 0.74908 0.92072 0.91542 0.92192 0.97978 0.94060 0.95147 0.92678 0.87461 0.85232 0.84280 0.83765 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.88 71.98 0.64 -1.09 16 2 C -0.07 -1.22 1.98 -10.80 -0.02 -1.24 16 3 C -0.15 -2.41 8.88 71.98 0.64 -1.77 16 4 C -0.05 -0.91 1.96 -12.28 -0.02 -0.93 16 5 H 0.12 1.36 7.86 -2.39 -0.02 1.34 16 6 C 0.52 12.12 5.70 87.66 0.50 12.62 16 7 O -0.58 -17.91 15.37 -3.03 -0.05 -17.95 16 8 N -0.71 -15.17 5.55 -463.06 -2.57 -17.74 16 9 C 0.16 4.23 5.96 86.38 0.51 4.74 16 10 C -0.11 -3.09 5.39 -10.80 -0.06 -3.14 16 11 H 0.11 3.08 8.04 -2.39 -0.02 3.06 16 12 C -0.18 -6.66 6.85 -9.89 -0.07 -6.73 16 13 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 14 C 0.19 9.13 5.75 86.53 0.50 9.63 16 15 N -0.62 -32.14 3.38 -688.15 -2.33 -34.47 16 16 C -0.24 -13.66 10.35 84.03 0.87 -12.79 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 18 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 19 N -0.95 -56.70 10.65 21.65 0.23 -56.46 16 20 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.15 6.11 7.04 86.53 0.61 6.72 16 25 C -0.16 -5.49 6.74 -9.89 -0.07 -5.55 16 26 H 0.12 3.65 8.12 -2.38 -0.02 3.63 16 27 C -0.08 -1.35 3.30 -19.87 -0.07 -1.41 16 28 C -0.12 -2.48 8.85 22.27 0.20 -2.28 16 29 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 30 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 31 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 32 C -0.11 -1.53 9.67 22.27 0.22 -1.32 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.74 7.08 -2.39 -0.02 0.72 16 36 H 0.06 1.31 7.08 -2.39 -0.02 1.29 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.04 0.76 7.24 -2.39 -0.02 0.75 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.41 6.62 8.39 -92.71 -0.78 5.84 16 41 H 0.06 1.68 7.94 -2.39 -0.02 1.66 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 3.39 6.34 -2.39 -0.02 3.37 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.11 2.49 7.30 -2.91 -0.02 2.47 16 49 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 50 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 51 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 52 H 0.15 1.26 7.95 -2.91 -0.02 1.24 16 Total: -1.00 -70.76 415.69 2.94 -67.82 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.12 Total: 23.90 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.52 Total: -12.50 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -4.67 Total: -108.67 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.76 2.94 -67.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.828 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds