Wall clock time and date at job start Wed Apr 1 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47321 * 2 1 4 4 C 1.52992 * 109.47456 * 239.99775 * 2 1 3 5 5 C 1.50705 * 109.47177 * 60.00260 * 4 2 1 6 6 O 1.21284 * 119.99867 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00244 * 180.02562 * 5 4 2 8 8 C 1.46492 * 119.99886 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47134 * 180.02562 * 8 7 5 10 10 H 1.08995 * 115.51238 * 330.58032 * 9 8 7 11 11 C 1.52998 * 117.44134 * 185.16840 * 9 8 7 12 12 H 1.08995 * 119.54105 * 4.11459 * 11 9 8 13 13 C 1.54387 * 118.11815 * 160.80898 * 11 9 8 14 14 N 1.48014 * 104.65330 * 87.21589 * 13 11 9 15 15 C 1.36936 * 127.84241 * 140.40069 * 14 13 11 16 16 H 1.08000 * 119.99547 * 195.62380 * 15 14 13 17 17 C 1.38803 * 120.00147 * 15.62295 * 15 14 13 18 18 N 1.31627 * 120.00270 * 9.00467 * 17 15 14 19 19 Si 1.86803 * 120.00257 * 189.00061 * 17 15 14 20 20 H 1.48504 * 109.46727 * 94.44928 * 19 17 15 21 21 H 1.48498 * 109.47724 * 214.44875 * 19 17 15 22 22 H 1.48501 * 109.46788 * 334.45352 * 19 17 15 23 23 C 1.48145 * 104.31522 * 320.45401 * 14 13 11 24 24 C 1.52997 * 117.44574 * 115.99696 * 9 8 7 25 25 H 1.09005 * 119.53873 * 355.88524 * 24 9 8 26 26 C 1.50706 * 109.47021 * 119.99516 * 2 1 3 27 27 C 1.38234 * 120.00249 * 300.00523 * 26 2 1 28 28 C 1.38235 * 120.00122 * 179.97438 * 27 26 2 29 29 C 1.38244 * 119.99659 * 0.27132 * 28 27 26 30 30 C 1.38238 * 120.00010 * 359.51627 * 29 28 27 31 31 C 1.38230 * 119.99813 * 0.43960 * 30 29 28 32 32 H 1.09001 * 109.47265 * 300.00252 * 1 2 3 33 33 H 1.09001 * 109.46667 * 59.99959 * 1 2 3 34 34 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47501 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46805 * 299.99888 * 3 2 1 37 37 H 1.09001 * 109.47157 * 59.99682 * 3 2 1 38 38 H 1.09002 * 109.47198 * 179.97438 * 4 2 1 39 39 H 1.08999 * 109.47244 * 300.00491 * 4 2 1 40 40 H 0.97003 * 119.99531 * 359.97438 * 7 5 4 41 41 H 1.09006 * 109.47507 * 299.99860 * 8 7 5 42 42 H 1.08995 * 109.47642 * 59.99766 * 8 7 5 43 43 H 1.09008 * 110.40600 * 205.97251 * 13 11 9 44 44 H 1.08993 * 110.41078 * 328.40129 * 13 11 9 45 45 H 0.96995 * 120.00376 * 179.97438 * 18 17 15 46 46 H 1.08996 * 110.40943 * 280.74737 * 23 14 13 47 47 H 1.09000 * 110.40458 * 158.31809 * 23 14 13 48 48 H 1.07999 * 120.00188 * 359.97188 * 27 26 2 49 49 H 1.07991 * 120.00116 * 180.02562 * 28 27 26 50 50 H 1.07995 * 119.99789 * 179.72612 * 29 28 27 51 51 H 1.07993 * 120.00003 * 180.27360 * 30 29 28 52 52 H 1.08001 * 119.99855 * 179.82825 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8409 0.9755 -2.3685 7 7 1.8630 -0.4716 -3.7038 8 6 1.3743 0.2186 -4.8999 9 6 1.8834 -0.5033 -6.1492 10 1 2.8382 -1.0171 -6.0381 11 6 1.5803 0.1361 -7.5057 12 1 1.0802 1.1037 -7.5440 13 6 2.4337 -0.2922 -8.7189 14 7 1.7454 -1.4866 -9.2579 15 6 1.5523 -1.8239 -10.5709 16 1 0.8262 -2.5791 -10.8332 17 6 2.2897 -1.1952 -11.5647 18 7 3.2939 -0.4081 -11.2409 19 14 1.8572 -1.4660 -13.3617 20 1 0.9541 -0.3808 -13.8223 21 1 3.0985 -1.4562 -14.1766 22 1 1.1749 -2.7761 -13.5145 23 6 1.3116 -2.2337 -8.0544 24 6 0.8408 -1.1435 -7.0678 25 1 -0.2104 -1.1291 -6.7797 26 6 2.0323 -0.7103 1.2306 27 6 1.6983 -0.2381 2.4861 28 6 2.1586 -0.8899 3.6148 29 6 2.9577 -2.0109 3.4880 30 6 3.2881 -2.4858 2.2324 31 6 2.8270 -1.8344 1.1038 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 3.1301 -0.7208 -1.2493 39 1 1.6767 -1.7489 -1.2492 40 1 2.4207 -1.2603 -3.7927 41 1 0.2843 0.2186 -4.8996 42 1 1.7375 1.2463 -4.9003 43 1 2.4576 0.5013 -9.4659 44 1 3.4448 -0.5470 -8.4015 45 1 3.8094 0.0309 -11.9354 46 1 2.1467 -2.7930 -7.6327 47 1 0.4888 -2.9051 -8.2999 48 1 1.0777 0.6403 2.5852 49 1 1.8973 -0.5212 4.5956 50 1 3.3210 -2.5176 4.3698 51 1 3.9086 -3.3640 2.1334 52 1 3.0874 -2.2037 0.1229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725322706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:09 Heat of formation + Delta-G solvation = 40.204056 kcal Electronic energy + Delta-G solvation = -28873.704707 eV Core-core repulsion = 25032.483268 eV Total energy + Delta-G solvation = -3841.221439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73429 -39.45276 -38.75684 -36.21338 -34.86554 -33.37562 -31.44857 -30.93722 -30.18837 -28.92811 -27.35474 -27.16726 -26.80095 -24.77918 -23.33194 -22.62832 -21.18493 -20.85077 -19.99300 -19.32872 -19.20786 -17.68510 -16.87067 -16.58493 -16.06997 -15.70856 -15.27982 -15.13898 -14.84354 -14.55397 -14.43397 -14.09525 -13.92273 -13.73815 -13.62067 -13.26138 -12.98297 -12.82951 -12.74655 -12.67973 -12.23190 -12.00557 -11.87088 -11.69564 -11.57877 -11.27514 -11.17816 -11.09256 -11.01524 -10.86280 -10.80735 -10.65780 -10.31863 -10.13941 -9.78050 -9.68691 -9.38925 -9.20787 -9.13309 -8.98103 -8.91244 -8.65612 -6.89075 -5.81967 -3.16534 1.08201 1.11095 2.55249 3.08257 3.36783 3.42220 3.44204 3.50182 4.11262 4.27099 4.39463 4.45064 4.69836 4.71804 4.72743 4.77194 4.85565 4.91665 5.07599 5.18248 5.27481 5.28940 5.29565 5.37057 5.39483 5.43081 5.49406 5.60888 5.66845 5.69818 5.77159 5.80154 5.86684 5.87169 5.89254 5.91940 5.95301 6.10981 6.20730 6.22904 6.25912 6.26487 6.35826 6.46341 6.55807 6.64390 6.69008 6.72083 6.89617 7.33532 7.45134 7.51133 7.69815 8.17715 8.19115 9.09113 9.71711 10.48597 11.32303 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.001642 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.120942 B =17044.432753 C =17437.090905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.150 4.150 4 C -0.136 4.136 5 C 0.513 3.487 6 O -0.535 6.535 7 N -0.724 5.724 8 C 0.155 3.845 9 C -0.150 4.150 10 H 0.102 0.898 11 C -0.162 4.162 12 H 0.103 0.897 13 C 0.184 3.816 14 N -0.594 5.594 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.154 3.846 24 C -0.171 4.171 25 H 0.102 0.898 26 C -0.065 4.065 27 C -0.114 4.114 28 C -0.119 4.119 29 C -0.129 4.129 30 C -0.117 4.117 31 C -0.126 4.126 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.023 0.977 45 H 0.254 0.746 46 H 0.024 0.976 47 H 0.049 0.951 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -1.165 28.866 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 C -0.207 4.207 4 C -0.176 4.176 5 C 0.299 3.701 6 O -0.413 6.413 7 N -0.376 5.376 8 C 0.031 3.969 9 C -0.169 4.169 10 H 0.120 0.880 11 C -0.182 4.182 12 H 0.121 0.879 13 C 0.058 3.942 14 N -0.318 5.318 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.028 3.972 24 C -0.191 4.191 25 H 0.120 0.880 26 C -0.065 4.065 27 C -0.132 4.132 28 C -0.137 4.137 29 C -0.147 4.147 30 C -0.136 4.136 31 C -0.144 4.144 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.235 0.765 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.041 0.959 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.432 -0.427 28.629 28.668 hybrid contribution 0.170 -0.599 -0.844 1.049 sum -1.263 -1.026 27.786 27.833 Atomic orbital electron populations 1.22124 0.92973 1.01746 1.03820 1.19193 0.96474 0.95204 0.89653 1.22128 1.00274 0.94444 1.03829 1.21875 1.02556 1.00666 0.92506 1.20561 0.80279 0.84680 0.84540 1.90578 1.37949 1.26419 1.86354 1.46104 1.53611 1.32120 1.05724 1.20860 0.98704 0.95550 0.81756 1.22530 0.99919 1.03942 0.90511 0.87987 1.24216 1.03995 0.96460 0.93552 0.87920 1.21043 0.91356 0.91333 0.90482 1.45176 1.65747 1.20523 1.00326 1.19016 1.16246 1.20077 0.80227 0.90553 1.24899 0.96526 1.00547 0.98300 1.69898 1.20162 1.34429 1.31707 0.86090 0.77282 0.77835 0.84477 1.21509 1.21657 1.20490 1.21139 0.96693 0.92120 0.87290 1.23970 0.96311 0.97904 1.00937 0.87972 1.19906 0.96858 0.95267 0.94488 1.20984 1.00263 1.00060 0.91891 1.21139 0.98059 0.96023 0.98454 1.21140 0.99053 0.97087 0.97458 1.21160 0.99923 0.99829 0.92639 1.21208 0.98406 0.95788 0.98974 0.92877 0.89195 0.93342 0.93334 0.89172 0.92885 0.88612 0.88607 0.76452 0.91489 0.91173 0.89181 0.95906 0.93551 0.95867 0.93215 0.86124 0.86251 0.86350 0.86153 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.99 37.16 0.30 -1.13 16 2 C 0.00 -0.04 0.60 -155.66 -0.09 -0.14 16 3 C -0.15 -1.43 7.99 37.16 0.30 -1.13 16 4 C -0.14 -1.09 3.43 -27.88 -0.10 -1.18 16 5 C 0.51 5.57 7.24 -10.98 -0.08 5.49 16 6 O -0.53 -7.38 11.35 5.55 0.06 -7.32 16 7 N -0.72 -7.58 5.56 -60.29 -0.33 -7.92 16 8 C 0.15 1.97 5.95 -4.04 -0.02 1.95 16 9 C -0.15 -2.20 5.40 -90.62 -0.49 -2.69 16 10 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 11 C -0.16 -2.99 6.85 -89.29 -0.61 -3.60 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C 0.18 4.34 5.69 -2.48 -0.01 4.32 16 14 N -0.59 -15.06 3.38 -168.97 -0.57 -15.63 16 15 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 16 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 17 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 18 N -0.92 -26.61 10.86 55.49 0.60 -26.01 16 19 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.15 3.15 7.04 -2.41 -0.02 3.13 16 24 C -0.17 -2.94 6.74 -89.29 -0.60 -3.54 16 25 H 0.10 1.63 8.12 -51.93 -0.42 1.21 16 26 C -0.07 -0.55 4.76 -104.62 -0.50 -1.05 16 27 C -0.11 -0.93 8.71 -39.58 -0.34 -1.28 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 30 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 31 C -0.13 -0.98 8.98 -39.58 -0.36 -1.33 16 32 H 0.05 0.46 7.39 -51.93 -0.38 0.08 16 33 H 0.09 1.04 5.51 -51.93 -0.29 0.75 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.04 5.51 -51.93 -0.29 0.76 16 37 H 0.05 0.46 7.39 -51.93 -0.38 0.08 16 38 H 0.10 0.64 7.52 -51.93 -0.39 0.25 16 39 H 0.10 0.64 7.51 -51.93 -0.39 0.25 16 40 H 0.40 3.33 8.40 -40.82 -0.34 2.99 16 41 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.09 2.39 6.51 -51.92 -0.34 2.06 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.12 0.88 7.10 -52.49 -0.37 0.51 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 52 H 0.13 0.77 5.90 -52.49 -0.31 0.46 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -31.36 405.43 -11.74 -43.09 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.51 Total: 3.64 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -4.07 Total: -12.74 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.30 Total: -49.55 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.06 Total: -7.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.36 -11.74 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725322706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.299 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds