Wall clock time and date at job start Wed Apr 1 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 C 1.53005 * 109.47124 * 240.00492 * 2 1 3 5 5 C 1.47196 * 109.47365 * 120.00281 * 2 1 3 6 6 C 2.64598 * 109.47453 * 120.00481 * 2 1 3 7 7 C 4.07797 * 109.47547 * 120.00325 * 2 1 3 8 8 O 1.21615 * 119.99671 * 103.46373 * 7 6 5 9 9 N 1.34767 * 120.00544 * 283.45388 * 7 6 5 10 10 C 1.46499 * 120.00278 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47299 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46894 * 54.99552 * 12 11 10 14 14 C 1.52995 * 109.47258 * 174.99883 * 12 11 10 15 15 C 1.50699 * 109.47044 * 184.99856 * 14 12 11 16 16 C 1.38238 * 120.00143 * 269.72934 * 15 14 12 17 17 C 1.38233 * 120.00102 * 179.76968 * 16 15 14 18 18 C 1.38241 * 120.00003 * 0.50106 * 17 16 15 19 19 C 1.38231 * 119.99540 * 359.74990 * 18 17 16 20 20 C 1.38231 * 120.00719 * 359.97438 * 19 18 17 21 21 N 1.46505 * 109.46930 * 295.00000 * 12 11 10 22 22 C 1.36931 * 119.99788 * 299.99848 * 21 12 11 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 12 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 12 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46842 * 299.99723 * 1 2 3 31 31 H 1.08995 * 109.47484 * 59.99925 * 1 2 3 32 32 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46989 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47508 * 300.00608 * 3 2 1 35 35 H 1.09000 * 109.47080 * 60.00423 * 3 2 1 36 36 H 1.09000 * 109.46563 * 300.00082 * 4 2 1 37 37 H 1.09003 * 109.47106 * 59.99198 * 4 2 1 38 38 H 1.08992 * 109.47439 * 179.97438 * 4 2 1 39 39 H 0.97006 * 119.99676 * 0.02562 * 9 7 6 40 40 H 1.09003 * 109.46915 * 60.00915 * 10 9 7 41 41 H 1.09000 * 109.47232 * 300.00356 * 10 9 7 42 42 H 1.08995 * 109.46943 * 60.00127 * 11 10 9 43 43 H 1.09000 * 109.46992 * 300.00073 * 11 10 9 44 44 H 1.08998 * 109.47112 * 304.99682 * 14 12 11 45 45 H 1.09000 * 109.47135 * 65.00248 * 14 12 11 46 46 H 1.07998 * 119.99670 * 359.97438 * 16 15 14 47 47 H 1.08002 * 120.00271 * 180.22908 * 17 16 15 48 48 H 1.07999 * 120.00193 * 179.73050 * 18 17 16 49 49 H 1.08009 * 119.99794 * 179.97438 * 19 18 17 50 50 H 1.08001 * 120.00728 * 179.97438 * 20 19 18 51 51 H 0.97000 * 119.99792 * 119.99643 * 21 12 11 52 52 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0207 -0.6939 1.2018 6 6 2.4121 -1.2475 2.1603 7 6 2.8896 -1.9225 3.3295 8 8 3.7755 -2.7503 3.2344 9 7 2.3575 -1.6404 4.5351 10 6 2.8464 -2.3306 5.7312 11 6 2.0805 -1.8303 6.9576 12 6 2.5915 -2.5507 8.2070 13 1 3.6708 -2.4203 8.2856 14 6 1.9151 -1.9630 9.4471 15 6 2.5071 -2.5861 10.6850 16 6 1.9488 -3.7342 11.2154 17 6 2.4947 -4.3085 12.3481 18 6 3.5925 -3.7289 12.9565 19 6 4.1474 -2.5781 12.4290 20 6 3.6051 -2.0069 11.2930 21 7 2.2778 -3.9785 8.1100 22 6 0.9755 -4.3875 8.0017 23 1 0.1796 -3.6576 7.9874 24 6 0.6787 -5.7400 7.9041 25 7 1.6487 -6.6295 7.9211 26 14 -1.0974 -6.2976 7.7486 27 1 -1.4708 -6.3661 6.3129 28 1 -1.2504 -7.6402 8.3644 29 1 -1.9828 -5.3298 8.4448 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6507 -0.9803 4.6108 40 1 3.9097 -2.1275 5.8588 41 1 2.6922 -3.4039 5.6199 42 1 1.0173 -2.0337 6.8299 43 1 2.2343 -0.7570 7.0691 44 1 2.0744 -0.8850 9.4713 45 1 0.8459 -2.1716 9.4111 46 1 1.0883 -4.1842 10.7429 47 1 2.0609 -5.2075 12.7605 48 1 4.0163 -4.1752 13.8440 49 1 5.0049 -2.1250 12.9045 50 1 4.0385 -1.1075 10.8811 51 1 2.9927 -4.6340 8.1225 52 1 1.4412 -7.5747 7.8532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725616046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:28 Heat of formation + Delta-G solvation = 26.813398 kcal Electronic energy + Delta-G solvation = -28620.076024 eV Core-core repulsion = 24778.273923 eV Total energy + Delta-G solvation = -3841.802101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.43312 -38.79899 -37.78741 -36.56818 -34.41782 -32.52619 -32.34086 -30.96386 -30.29536 -29.15255 -27.67988 -27.65494 -27.12373 -24.55299 -23.95725 -22.43464 -21.96303 -20.87651 -20.72730 -19.57690 -18.30295 -17.08063 -16.17296 -16.14636 -15.81465 -15.50011 -15.01238 -14.62987 -14.59442 -14.58539 -14.34116 -14.03784 -13.92431 -13.27744 -13.03920 -12.91468 -12.83347 -12.80144 -12.75205 -12.38523 -12.09146 -12.06942 -11.67902 -11.65302 -11.59704 -11.45909 -11.34262 -11.00681 -10.88764 -10.77811 -10.55733 -10.50960 -10.36287 -10.35405 -10.28341 -10.04107 -9.79087 -9.57053 -8.95077 -8.78563 -8.33684 -8.06448 -6.95904 -5.76447 -3.05168 1.63779 1.92450 2.00917 2.28080 3.19019 3.40791 3.45712 3.48852 3.62973 4.10663 4.37739 4.54918 4.57863 4.57952 4.68118 5.18135 5.22705 5.24697 5.31923 5.34336 5.37962 5.43250 5.46183 5.47500 5.48108 5.53070 5.59755 5.66411 5.69145 5.75424 5.82927 5.89460 5.90854 5.97698 6.03791 6.12005 6.15604 6.24581 6.38389 6.43339 6.49773 6.67244 6.68156 6.72435 6.80909 6.93460 6.98770 7.14328 7.18190 7.37734 7.62907 7.64429 7.68145 8.31355 8.40360 9.52541 10.09894 10.44804 11.45315 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002352 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.979352 B =11902.672635 C =13480.720426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.084 4.084 6 C -0.211 4.211 7 C 0.625 3.375 8 O -0.524 6.524 9 N -0.711 5.711 10 C 0.126 3.874 11 C -0.139 4.139 12 C 0.187 3.813 13 H 0.056 0.944 14 C -0.094 4.094 15 C -0.057 4.057 16 C -0.079 4.079 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.133 4.133 20 C -0.130 4.130 21 N -0.715 5.715 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.007 4.007 25 N -0.924 5.924 26 Si 0.895 3.105 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.133 0.867 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.386 0.614 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 16.866 -7.149 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.086 4.086 6 C -0.214 4.214 7 C 0.411 3.589 8 O -0.401 6.401 9 N -0.361 5.361 10 C 0.004 3.996 11 C -0.179 4.179 12 C 0.075 3.925 13 H 0.074 0.926 14 C -0.133 4.133 15 C -0.057 4.057 16 C -0.097 4.097 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.148 4.148 21 N -0.355 5.355 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.203 4.203 25 N -0.572 5.572 26 Si 0.726 3.274 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.151 0.849 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.129 0.871 51 H 0.220 0.780 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.350 16.192 -7.178 17.715 hybrid contribution -1.101 -0.477 -0.015 1.200 sum -0.751 15.715 -7.193 17.299 Atomic orbital electron populations 1.21905 0.92261 1.02982 1.02743 1.17906 0.95956 0.94295 0.88045 1.21894 1.01762 0.93387 1.02739 1.21915 1.01845 1.00760 0.95466 1.22447 0.95987 0.95313 0.94887 1.20953 1.02441 1.01206 0.96777 1.14723 0.82018 0.81379 0.80821 1.90874 1.30218 1.33078 1.85948 1.45968 1.40011 1.43333 1.06807 1.21477 0.97465 0.98768 0.81891 1.22279 1.01568 0.98427 0.95670 1.20056 0.96270 0.86258 0.89954 0.92603 1.21147 1.01379 0.97378 0.93412 1.19795 0.94993 0.95366 0.95550 1.21282 1.00337 0.94217 0.93874 1.21144 0.96755 0.99586 0.96704 1.20977 0.97401 0.96775 1.00304 1.20923 1.00082 0.96879 0.97205 1.20961 0.97021 1.00320 0.96479 1.42371 1.05946 0.99923 1.87221 1.19015 0.84536 0.90635 1.42409 0.91295 1.24674 0.96608 0.96071 1.02983 1.69652 1.30034 1.00686 1.56814 0.86389 0.85316 0.78033 0.77632 1.21903 1.21903 1.20843 0.91866 0.91216 0.91845 0.91956 0.91205 0.91910 0.91846 0.91271 0.91895 0.76704 0.92203 0.89112 0.90797 0.93006 0.92724 0.90679 0.84871 0.86911 0.87251 0.87212 0.87050 0.78039 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.43 37.16 0.31 -0.68 16 2 C 0.04 0.32 0.95 -157.30 -0.15 0.17 16 3 C -0.14 -0.93 8.43 37.16 0.31 -0.62 16 4 C -0.14 -1.07 8.43 37.16 0.31 -0.75 16 5 C -0.08 -1.02 11.77 -37.12 -0.44 -1.45 16 6 C -0.21 -3.11 13.61 -38.84 -0.53 -3.64 16 7 C 0.62 10.80 7.65 -14.34 -0.11 10.69 16 8 O -0.52 -11.22 17.08 5.26 0.09 -11.13 16 9 N -0.71 -10.73 5.55 -62.76 -0.35 -11.08 16 10 C 0.13 2.14 5.56 -4.04 -0.02 2.12 16 11 C -0.14 -2.16 4.73 -26.73 -0.13 -2.28 16 12 C 0.19 3.27 2.67 -67.93 -0.18 3.09 16 13 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.09 -1.53 4.75 -27.89 -0.13 -1.66 16 15 C -0.06 -0.98 4.95 -104.62 -0.52 -1.50 16 16 C -0.08 -1.49 9.32 -39.58 -0.37 -1.86 16 17 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 18 C -0.14 -2.10 10.05 -39.58 -0.40 -2.49 16 19 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 20 C -0.13 -2.01 9.70 -39.58 -0.38 -2.39 16 21 N -0.71 -15.88 4.14 -53.42 -0.22 -16.11 16 22 C -0.23 -5.76 7.90 -15.06 -0.12 -5.88 16 23 H 0.07 1.65 6.64 -52.49 -0.35 1.30 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.92 -26.73 13.06 55.49 0.72 -26.01 16 26 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.40 4.81 8.44 -40.82 -0.34 4.46 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.93 7.75 -51.93 -0.40 1.52 16 42 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 45 H 0.07 1.33 7.05 -51.93 -0.37 0.97 16 46 H 0.13 2.81 7.39 -52.49 -0.39 2.42 16 47 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 48 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 49 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 50 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 51 H 0.39 9.71 8.03 -40.82 -0.33 9.38 16 52 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 433.95 15.07 6.54 6.54 Total: -1.00 -30.88 433.95 -10.53 -41.41 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -8.87 Total: 14.17 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.43 Total: -14.32 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.16 Total: -53.19 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -30.88 -10.53 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725616046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.221 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds