Wall clock time and date at job start Wed Apr 1 2020 01:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 C 1.53005 * 109.47124 * 240.00492 * 2 1 3 5 5 C 1.47196 * 109.47365 * 120.00281 * 2 1 3 6 6 C 2.64598 * 109.47453 * 120.00481 * 2 1 3 7 7 C 4.07797 * 109.47547 * 120.00325 * 2 1 3 8 8 O 1.21615 * 119.99671 * 103.46373 * 7 6 5 9 9 N 1.34767 * 120.00544 * 283.45388 * 7 6 5 10 10 C 1.46499 * 120.00278 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47299 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46894 * 54.99552 * 12 11 10 14 14 C 1.52995 * 109.47258 * 174.99883 * 12 11 10 15 15 C 1.50699 * 109.47044 * 184.99856 * 14 12 11 16 16 C 1.38238 * 120.00143 * 269.72934 * 15 14 12 17 17 C 1.38233 * 120.00102 * 179.76968 * 16 15 14 18 18 C 1.38241 * 120.00003 * 0.50106 * 17 16 15 19 19 C 1.38231 * 119.99540 * 359.74990 * 18 17 16 20 20 C 1.38231 * 120.00719 * 359.97438 * 19 18 17 21 21 N 1.46505 * 109.46930 * 295.00000 * 12 11 10 22 22 C 1.36931 * 119.99788 * 299.99848 * 21 12 11 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 12 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 12 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46842 * 299.99723 * 1 2 3 31 31 H 1.08995 * 109.47484 * 59.99925 * 1 2 3 32 32 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46989 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47508 * 300.00608 * 3 2 1 35 35 H 1.09000 * 109.47080 * 60.00423 * 3 2 1 36 36 H 1.09000 * 109.46563 * 300.00082 * 4 2 1 37 37 H 1.09003 * 109.47106 * 59.99198 * 4 2 1 38 38 H 1.08992 * 109.47439 * 179.97438 * 4 2 1 39 39 H 0.97006 * 119.99676 * 0.02562 * 9 7 6 40 40 H 1.09003 * 109.46915 * 60.00915 * 10 9 7 41 41 H 1.09000 * 109.47232 * 300.00356 * 10 9 7 42 42 H 1.08995 * 109.46943 * 60.00127 * 11 10 9 43 43 H 1.09000 * 109.46992 * 300.00073 * 11 10 9 44 44 H 1.08998 * 109.47112 * 304.99682 * 14 12 11 45 45 H 1.09000 * 109.47135 * 65.00248 * 14 12 11 46 46 H 1.07998 * 119.99670 * 359.97438 * 16 15 14 47 47 H 1.08002 * 120.00271 * 180.22908 * 17 16 15 48 48 H 1.07999 * 120.00193 * 179.73050 * 18 17 16 49 49 H 1.08009 * 119.99794 * 179.97438 * 19 18 17 50 50 H 1.08001 * 120.00728 * 179.97438 * 20 19 18 51 51 H 0.97000 * 119.99792 * 119.99643 * 21 12 11 52 52 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0207 -0.6939 1.2018 6 6 2.4121 -1.2475 2.1603 7 6 2.8896 -1.9225 3.3295 8 8 3.7755 -2.7503 3.2344 9 7 2.3575 -1.6404 4.5351 10 6 2.8464 -2.3306 5.7312 11 6 2.0805 -1.8303 6.9576 12 6 2.5915 -2.5507 8.2070 13 1 3.6708 -2.4203 8.2856 14 6 1.9151 -1.9630 9.4471 15 6 2.5071 -2.5861 10.6850 16 6 1.9488 -3.7342 11.2154 17 6 2.4947 -4.3085 12.3481 18 6 3.5925 -3.7289 12.9565 19 6 4.1474 -2.5781 12.4290 20 6 3.6051 -2.0069 11.2930 21 7 2.2778 -3.9785 8.1100 22 6 0.9755 -4.3875 8.0017 23 1 0.1796 -3.6576 7.9874 24 6 0.6787 -5.7400 7.9041 25 7 1.6487 -6.6295 7.9211 26 14 -1.0974 -6.2976 7.7486 27 1 -1.4708 -6.3661 6.3129 28 1 -1.2504 -7.6402 8.3644 29 1 -1.9828 -5.3298 8.4448 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6507 -0.9803 4.6108 40 1 3.9097 -2.1275 5.8588 41 1 2.6922 -3.4039 5.6199 42 1 1.0173 -2.0337 6.8299 43 1 2.2343 -0.7570 7.0691 44 1 2.0744 -0.8850 9.4713 45 1 0.8459 -2.1716 9.4111 46 1 1.0883 -4.1842 10.7429 47 1 2.0609 -5.2075 12.7605 48 1 4.0163 -4.1752 13.8440 49 1 5.0049 -2.1250 12.9045 50 1 4.0385 -1.1075 10.8811 51 1 2.9927 -4.6340 8.1225 52 1 1.4412 -7.5747 7.8532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725616046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:27 Heat of formation + Delta-G solvation = 9.952939 kcal Electronic energy + Delta-G solvation = -28620.807148 eV Core-core repulsion = 24778.273923 eV Total energy + Delta-G solvation = -3842.533226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.82069 -40.10040 -38.49899 -38.05975 -35.90835 -34.26906 -33.44951 -32.35901 -31.56592 -30.81815 -28.53780 -28.21702 -28.19174 -26.07702 -25.54086 -23.66588 -23.24081 -22.09418 -21.88303 -21.05702 -19.60935 -18.83574 -17.44244 -17.33908 -17.05729 -16.79309 -16.50596 -15.98598 -15.85349 -15.53097 -15.37026 -15.22955 -15.21562 -15.03614 -14.51171 -14.29111 -14.09320 -13.79564 -13.36621 -13.32172 -13.10225 -13.01812 -12.89450 -12.80814 -12.73970 -12.62328 -12.49820 -12.34452 -12.29136 -12.28001 -12.17069 -11.74522 -11.70915 -11.63028 -11.50771 -11.33533 -11.27155 -11.23324 -10.83741 -10.19591 -9.62293 -9.38955 -8.84461 -7.83021 -5.07599 0.45137 0.65775 0.72664 1.21115 1.45146 1.46361 1.52832 2.00469 2.41821 2.60762 3.06512 3.13558 3.52269 3.93700 3.93778 3.95626 3.95693 4.00721 4.15942 4.21870 4.30182 4.33457 4.38916 4.45317 4.60386 4.67769 4.73290 4.74908 4.79001 4.83533 4.84643 4.87136 4.95635 4.95991 4.98545 5.06375 5.11208 5.14777 5.19287 5.24819 5.34737 5.36864 5.37342 5.38788 5.45468 5.53091 5.64955 5.74294 5.82872 6.05533 6.13578 6.35148 6.37707 6.38272 7.02632 7.44917 8.21702 8.43806 9.40798 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002352 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.979352 B =11902.672635 C =13480.720426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.039 4.039 6 C -0.268 4.268 7 C 0.625 3.375 8 O -0.578 6.578 9 N -0.696 5.696 10 C 0.136 3.864 11 C -0.125 4.125 12 C 0.181 3.819 13 H 0.065 0.935 14 C -0.084 4.084 15 C -0.072 4.072 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.130 4.130 20 C -0.129 4.129 21 N -0.722 5.722 22 C -0.197 4.197 23 H 0.078 0.922 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.945 3.055 27 H -0.299 1.299 28 H -0.306 1.306 29 H -0.267 1.267 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.417 0.583 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.145 0.855 50 H 0.142 0.858 51 H 0.368 0.632 52 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 21.223 -7.606 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.041 4.041 6 C -0.271 4.271 7 C 0.412 3.588 8 O -0.460 6.460 9 N -0.346 5.346 10 C 0.012 3.988 11 C -0.164 4.164 12 C 0.072 3.928 13 H 0.083 0.917 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.126 4.126 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.147 4.147 21 N -0.360 5.360 22 C -0.330 4.330 23 H 0.096 0.904 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.777 3.223 27 H -0.227 1.227 28 H -0.233 1.233 29 H -0.192 1.192 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.154 0.846 49 H 0.163 0.837 50 H 0.159 0.841 51 H 0.199 0.801 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.164 20.654 -7.614 22.013 hybrid contribution -1.011 -1.659 0.113 1.946 sum -0.846 18.995 -7.501 20.440 Atomic orbital electron populations 1.21935 0.90791 1.02793 1.04249 1.18335 0.97068 0.95158 0.86410 1.21917 1.01462 0.91918 1.04237 1.21957 1.01490 1.00485 0.96127 1.23414 0.93325 0.93081 0.94303 1.20593 1.05243 1.03609 0.97678 1.15024 0.81205 0.80637 0.81902 1.90832 1.32742 1.35587 1.86819 1.45783 1.39950 1.43018 1.05824 1.21225 0.98043 0.96217 0.83270 1.22138 1.00232 1.00640 0.93434 1.20351 0.97286 0.83724 0.91487 0.91650 1.21048 0.99836 0.99415 0.92065 1.19942 0.95997 0.95140 0.96142 1.21131 1.00412 0.95774 0.95268 1.21290 0.97933 1.00056 0.96793 1.21308 0.96384 0.96961 1.00883 1.21376 1.00487 0.96184 0.96685 1.21299 0.95970 1.01009 0.96383 1.42507 1.04516 1.01926 1.87021 1.19292 0.85745 0.90294 1.37621 0.90380 1.25254 0.99164 0.96759 1.05390 1.69803 1.31488 1.00125 1.60552 0.85540 0.82600 0.77239 0.76908 1.22721 1.23328 1.19171 0.91730 0.88424 0.92916 0.92519 0.88456 0.91740 0.92942 0.88267 0.92570 0.74652 0.92042 0.94013 0.91853 0.88539 0.88903 0.92502 0.88474 0.86942 0.84621 0.83746 0.84060 0.80104 0.94872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.43 71.98 0.61 -0.96 16 2 C 0.03 0.43 0.95 -53.99 -0.05 0.38 16 3 C -0.14 -1.39 8.43 71.98 0.61 -0.78 16 4 C -0.14 -1.82 8.43 71.98 0.61 -1.21 16 5 C -0.04 -0.90 11.77 31.12 0.37 -0.53 16 6 C -0.27 -7.98 13.61 30.01 0.41 -7.58 16 7 C 0.62 22.32 7.65 85.49 0.65 22.98 16 8 O -0.58 -26.18 17.08 -4.08 -0.07 -26.25 16 9 N -0.70 -20.97 5.55 -470.74 -2.61 -23.58 16 10 C 0.14 4.63 5.56 86.38 0.48 5.12 16 11 C -0.12 -3.64 4.73 30.60 0.14 -3.50 16 12 C 0.18 6.17 2.67 44.99 0.12 6.29 16 13 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.08 -2.60 4.75 29.85 0.14 -2.46 16 15 C -0.07 -2.41 4.95 -19.86 -0.10 -2.51 16 16 C -0.11 -4.16 9.32 22.27 0.21 -3.95 16 17 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 18 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 19 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 20 C -0.13 -3.58 9.70 22.27 0.22 -3.36 16 21 N -0.72 -32.99 4.14 -322.93 -1.34 -34.33 16 22 C -0.20 -9.95 7.90 84.04 0.66 -9.29 16 23 H 0.08 3.76 6.64 -2.91 -0.02 3.74 16 24 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 25 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 26 Si 0.95 46.12 29.55 68.60 2.03 48.14 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 28 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 9.51 8.44 -92.70 -0.78 8.72 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 41 H 0.04 1.86 7.75 -2.39 -0.02 1.84 16 42 H 0.06 2.02 7.11 -2.39 -0.02 2.00 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.09 2.16 8.09 -2.39 -0.02 2.15 16 45 H 0.06 1.96 7.05 -2.39 -0.02 1.94 16 46 H 0.10 4.37 7.39 -2.91 -0.02 4.35 16 47 H 0.11 3.75 8.06 -2.91 -0.02 3.72 16 48 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 49 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 50 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 51 H 0.37 19.41 8.03 -92.71 -0.74 18.67 16 52 H 0.24 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -73.57 433.95 3.89 -69.68 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -0.62 Total: 41.92 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 6.21 Total: -16.67 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.67 Total: -116.82 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.25 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.57 3.89 -69.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725616046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.635 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds