Wall clock time and date at job start Wed Apr 1 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47131 * 239.99700 * 2 1 3 5 5 C 1.47208 * 109.46866 * 119.99789 * 2 1 3 6 6 C 2.64608 * 109.46832 * 119.99911 * 2 1 3 7 7 C 4.07807 * 109.46911 * 119.99977 * 2 1 3 8 8 O 1.21615 * 119.99764 * 187.09025 * 7 6 5 9 9 N 1.34772 * 120.00231 * 7.09312 * 7 6 5 10 10 C 1.46494 * 120.00103 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47315 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47180 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47505 * 305.00220 * 12 11 10 14 14 C 1.52998 * 109.47206 * 185.00035 * 12 11 10 15 15 C 1.50700 * 109.47366 * 175.00144 * 14 12 11 16 16 C 1.38229 * 120.00124 * 269.72834 * 15 14 12 17 17 C 1.38230 * 120.00202 * 179.76476 * 16 15 14 18 18 C 1.38244 * 119.99803 * 0.51007 * 17 16 15 19 19 C 1.38233 * 119.99933 * 359.74468 * 18 17 16 20 20 C 1.38230 * 119.99822 * 90.00260 * 15 14 12 21 21 N 1.46506 * 109.47021 * 65.00616 * 12 11 10 22 22 C 1.36939 * 120.00073 * 59.72087 * 21 12 11 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 12 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 12 25 25 N 1.31625 * 120.00056 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00155 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46896 * 90.00225 * 26 24 22 28 28 H 1.48501 * 109.47275 * 210.00265 * 26 24 22 29 29 H 1.48499 * 109.47039 * 330.00065 * 26 24 22 30 30 H 1.09008 * 109.47357 * 300.00518 * 1 2 3 31 31 H 1.09002 * 109.47154 * 60.00000 * 1 2 3 32 32 H 1.09001 * 109.47763 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46642 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47253 * 299.99776 * 3 2 1 35 35 H 1.09004 * 109.46932 * 60.00088 * 3 2 1 36 36 H 1.09001 * 109.47069 * 300.00208 * 4 2 1 37 37 H 1.09002 * 109.46856 * 60.00118 * 4 2 1 38 38 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 39 39 H 0.97000 * 120.00105 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.47150 * 59.99886 * 10 9 7 41 41 H 1.08995 * 109.47462 * 299.99974 * 10 9 7 42 42 H 1.09000 * 109.46589 * 60.00486 * 11 10 9 43 43 H 1.08995 * 109.47080 * 300.00508 * 11 10 9 44 44 H 1.09002 * 109.47541 * 295.00523 * 14 12 11 45 45 H 1.09007 * 109.46813 * 55.00294 * 14 12 11 46 46 H 1.07998 * 120.00111 * 359.97438 * 16 15 14 47 47 H 1.08002 * 120.00478 * 180.23342 * 17 16 15 48 48 H 1.08000 * 119.99843 * 179.72513 * 18 17 16 49 49 H 1.07998 * 120.00066 * 179.97438 * 19 18 17 50 50 H 1.08003 * 120.00265 * 0.02562 * 20 15 14 51 51 H 0.97005 * 119.99811 * 239.99881 * 21 12 11 52 52 H 0.97000 * 119.99835 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2020 6 6 2.4119 -1.2474 2.1606 7 6 2.8892 -1.9224 3.3298 8 8 3.8840 -1.5190 3.9013 9 7 2.2361 -3.0049 3.7968 10 6 2.7247 -3.6958 4.9926 11 6 1.8095 -4.8810 5.3067 12 6 2.3202 -5.6029 6.5552 13 1 3.3629 -5.8854 6.4106 14 6 1.4805 -6.8587 6.7975 15 6 2.0587 -7.6344 7.9529 16 6 3.0153 -8.6056 7.7237 17 6 3.5492 -9.3138 8.7840 18 6 3.1188 -9.0581 10.0726 19 6 2.1583 -8.0906 10.3013 20 6 1.6283 -7.3788 9.2414 21 7 2.2116 -4.7120 7.7132 22 6 0.9894 -4.2201 8.0864 23 1 0.1053 -4.4892 7.5274 24 6 0.8867 -3.3756 9.1832 25 7 -0.2881 -2.9024 9.5417 26 14 2.4156 -2.9107 10.1505 27 1 3.0121 -1.6799 9.5720 28 1 2.0485 -2.6637 11.5681 29 1 3.4016 -4.0189 10.0804 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2491 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.4424 -3.3265 3.3412 40 1 2.7266 -3.0052 5.8359 41 1 3.7381 -4.0559 4.8156 42 1 1.8073 -5.5716 4.4635 43 1 0.7962 -4.5205 5.4838 44 1 0.4551 -6.5710 7.0299 45 1 1.4894 -7.4801 5.9020 46 1 3.3480 -8.8087 6.7165 47 1 4.2993 -10.0699 8.6053 48 1 3.5327 -9.6145 10.9005 49 1 1.8218 -7.8912 11.3079 50 1 0.8774 -6.6234 9.4201 51 1 3.0062 -4.4674 8.2130 52 1 -0.3599 -2.3125 10.3084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725616049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:31 Heat of formation + Delta-G solvation = 29.934731 kcal Electronic energy + Delta-G solvation = -28676.103899 eV Core-core repulsion = 24834.437149 eV Total energy + Delta-G solvation = -3841.666750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.48158 -38.89739 -37.78807 -36.71170 -34.49135 -32.52056 -32.35940 -31.10510 -30.38939 -29.68961 -27.67571 -27.64867 -27.32847 -24.59264 -23.73103 -22.44530 -22.05159 -20.90044 -20.77795 -19.45816 -18.36443 -17.76841 -16.27080 -16.16396 -15.86102 -15.49579 -14.96996 -14.71045 -14.62798 -14.59620 -14.27911 -14.22775 -14.07672 -13.24389 -13.10262 -12.92982 -12.84989 -12.79908 -12.77763 -12.51336 -12.09200 -12.06353 -11.78124 -11.70292 -11.66369 -11.58544 -11.54729 -11.08319 -10.93913 -10.89426 -10.58618 -10.50067 -10.37672 -10.33874 -10.22660 -10.09246 -9.96913 -9.49355 -8.97525 -8.84132 -8.43786 -8.16437 -7.27908 -5.79036 -3.14218 1.61549 1.82887 1.91159 2.26781 3.16447 3.40628 3.44571 3.49540 3.60445 4.08704 4.28529 4.55270 4.58150 4.59884 4.67795 5.15905 5.17810 5.23104 5.25021 5.25468 5.32234 5.36214 5.38499 5.43699 5.47932 5.48765 5.52564 5.61454 5.67492 5.70689 5.74630 5.88895 5.90016 5.91336 5.92922 5.99363 6.06223 6.14984 6.25903 6.32089 6.43515 6.56044 6.60164 6.68470 6.70044 6.86357 6.90167 7.05571 7.17150 7.29217 7.54790 7.60047 7.94985 8.27045 8.39754 9.18395 9.92133 10.11403 11.38599 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.002325 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.480308 B =12039.649612 C =13306.585232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.081 4.081 6 C -0.213 4.213 7 C 0.627 3.373 8 O -0.527 6.527 9 N -0.710 5.710 10 C 0.126 3.874 11 C -0.140 4.140 12 C 0.193 3.807 13 H 0.057 0.943 14 C -0.094 4.094 15 C -0.058 4.058 16 C -0.129 4.129 17 C -0.132 4.132 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.086 4.086 21 N -0.742 5.742 22 C -0.238 4.238 23 H 0.092 0.908 24 C 0.011 3.989 25 N -0.932 5.932 26 Si 0.874 3.126 27 H -0.285 1.285 28 H -0.294 1.294 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.401 0.599 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.138 0.862 51 H 0.363 0.637 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -3.539 -17.594 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.215 4.215 7 C 0.413 3.587 8 O -0.404 6.404 9 N -0.360 5.360 10 C 0.004 3.996 11 C -0.180 4.180 12 C 0.082 3.918 13 H 0.075 0.925 14 C -0.133 4.133 15 C -0.058 4.058 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.104 4.104 21 N -0.384 5.384 22 C -0.367 4.367 23 H 0.109 0.891 24 C -0.185 4.185 25 N -0.579 5.579 26 Si 0.704 3.296 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.235 0.765 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.132 0.868 50 H 0.156 0.844 51 H 0.196 0.804 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.303 -3.213 -17.104 17.714 hybrid contribution 0.689 0.306 0.795 1.095 sum 3.992 -2.907 -16.309 17.040 Atomic orbital electron populations 1.21910 0.92200 1.02929 1.02876 1.17917 0.96008 0.94392 0.87916 1.21915 1.01826 0.93462 1.02788 1.21896 1.01749 1.00621 0.95521 1.22460 0.96365 0.95887 0.93648 1.20901 1.02228 1.01961 0.96458 1.14714 0.83108 0.80013 0.80914 1.90860 1.25479 1.65645 1.58464 1.45933 1.30630 1.29142 1.30305 1.21454 0.97080 0.94905 0.86197 1.22254 1.01078 0.96061 0.98573 1.20008 0.96429 0.88693 0.86701 0.92455 1.21127 1.01477 0.96204 0.94495 1.19828 0.95761 0.94845 0.95337 1.20990 0.98012 0.97303 0.98441 1.20947 1.00557 1.00458 0.93070 1.21000 0.98700 0.99183 0.96574 1.21186 0.97585 0.96621 0.99114 1.21402 0.99610 0.97639 0.91766 1.42773 1.07019 1.56170 1.32435 1.18886 0.85945 1.22107 1.09787 0.89052 1.24595 0.95723 0.99693 0.98517 1.69691 1.21921 1.37269 1.29054 0.86710 0.84116 0.78747 0.80014 1.21146 1.22013 1.20027 0.91781 0.91216 0.91840 0.91914 0.91236 0.91830 0.91909 0.91184 0.91971 0.76505 0.89540 0.92200 0.92677 0.90151 0.90071 0.92416 0.86913 0.87118 0.87171 0.86804 0.84413 0.80426 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.43 37.16 0.31 -0.69 16 2 C 0.04 0.32 0.95 -157.29 -0.15 0.17 16 3 C -0.14 -1.07 8.43 37.16 0.31 -0.76 16 4 C -0.14 -0.93 8.43 37.16 0.31 -0.62 16 5 C -0.08 -0.98 11.77 -37.12 -0.44 -1.42 16 6 C -0.21 -3.11 13.61 -38.84 -0.53 -3.64 16 7 C 0.63 10.65 7.65 -14.34 -0.11 10.54 16 8 O -0.53 -11.02 17.09 5.26 0.09 -10.93 16 9 N -0.71 -10.52 5.55 -62.77 -0.35 -10.87 16 10 C 0.13 2.05 5.56 -4.04 -0.02 2.03 16 11 C -0.14 -2.10 4.73 -26.73 -0.13 -2.23 16 12 C 0.19 3.23 2.67 -67.93 -0.18 3.04 16 13 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.09 -1.49 4.76 -27.88 -0.13 -1.62 16 15 C -0.06 -0.96 4.95 -104.63 -0.52 -1.48 16 16 C -0.13 -1.91 9.70 -39.59 -0.38 -2.29 16 17 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 18 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 19 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 20 C -0.09 -1.58 9.31 -39.58 -0.37 -1.95 16 21 N -0.74 -15.59 3.93 -53.43 -0.21 -15.80 16 22 C -0.24 -5.90 8.39 -15.06 -0.13 -6.03 16 23 H 0.09 2.43 6.87 -52.48 -0.36 2.07 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 25 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 26 Si 0.87 21.76 27.73 -169.99 -4.71 17.05 16 27 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.40 4.79 8.44 -40.82 -0.34 4.45 16 40 H 0.09 1.74 7.75 -51.93 -0.40 1.33 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.36 7.09 -51.93 -0.37 1.00 16 44 H 0.08 1.45 7.07 -51.93 -0.37 1.09 16 45 H 0.06 0.77 8.08 -51.92 -0.42 0.35 16 46 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 50 H 0.14 2.88 7.39 -52.48 -0.39 2.49 16 51 H 0.36 8.01 5.89 -40.82 -0.24 7.77 16 52 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 430.81 15.07 6.49 6.49 Total: -1.00 -31.93 430.81 -10.17 -42.11 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -8.82 Total: 12.96 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.43 Total: -13.91 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.22 Total: -53.76 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -31.93 -10.17 -42.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725616049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.042 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds