Wall clock time and date at job start Wed Apr 1 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47131 * 239.99700 * 2 1 3 5 5 C 1.47208 * 109.46866 * 119.99789 * 2 1 3 6 6 C 2.64608 * 109.46832 * 119.99911 * 2 1 3 7 7 C 4.07807 * 109.46911 * 119.99977 * 2 1 3 8 8 O 1.21615 * 119.99764 * 187.09025 * 7 6 5 9 9 N 1.34772 * 120.00231 * 7.09312 * 7 6 5 10 10 C 1.46494 * 120.00103 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47315 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47180 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47505 * 305.00220 * 12 11 10 14 14 C 1.52998 * 109.47206 * 185.00035 * 12 11 10 15 15 C 1.50700 * 109.47366 * 175.00144 * 14 12 11 16 16 C 1.38229 * 120.00124 * 269.72834 * 15 14 12 17 17 C 1.38230 * 120.00202 * 179.76476 * 16 15 14 18 18 C 1.38244 * 119.99803 * 0.51007 * 17 16 15 19 19 C 1.38233 * 119.99933 * 359.74468 * 18 17 16 20 20 C 1.38230 * 119.99822 * 90.00260 * 15 14 12 21 21 N 1.46506 * 109.47021 * 65.00616 * 12 11 10 22 22 C 1.36939 * 120.00073 * 59.72087 * 21 12 11 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 12 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 12 25 25 N 1.31625 * 120.00056 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00155 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46896 * 90.00225 * 26 24 22 28 28 H 1.48501 * 109.47275 * 210.00265 * 26 24 22 29 29 H 1.48499 * 109.47039 * 330.00065 * 26 24 22 30 30 H 1.09008 * 109.47357 * 300.00518 * 1 2 3 31 31 H 1.09002 * 109.47154 * 60.00000 * 1 2 3 32 32 H 1.09001 * 109.47763 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46642 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47253 * 299.99776 * 3 2 1 35 35 H 1.09004 * 109.46932 * 60.00088 * 3 2 1 36 36 H 1.09001 * 109.47069 * 300.00208 * 4 2 1 37 37 H 1.09002 * 109.46856 * 60.00118 * 4 2 1 38 38 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 39 39 H 0.97000 * 120.00105 * 359.97438 * 9 7 6 40 40 H 1.09001 * 109.47150 * 59.99886 * 10 9 7 41 41 H 1.08995 * 109.47462 * 299.99974 * 10 9 7 42 42 H 1.09000 * 109.46589 * 60.00486 * 11 10 9 43 43 H 1.08995 * 109.47080 * 300.00508 * 11 10 9 44 44 H 1.09002 * 109.47541 * 295.00523 * 14 12 11 45 45 H 1.09007 * 109.46813 * 55.00294 * 14 12 11 46 46 H 1.07998 * 120.00111 * 359.97438 * 16 15 14 47 47 H 1.08002 * 120.00478 * 180.23342 * 17 16 15 48 48 H 1.08000 * 119.99843 * 179.72513 * 18 17 16 49 49 H 1.07998 * 120.00066 * 179.97438 * 19 18 17 50 50 H 1.08003 * 120.00265 * 0.02562 * 20 15 14 51 51 H 0.97005 * 119.99811 * 239.99881 * 21 12 11 52 52 H 0.97000 * 119.99835 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2020 6 6 2.4119 -1.2474 2.1606 7 6 2.8892 -1.9224 3.3298 8 8 3.8840 -1.5190 3.9013 9 7 2.2361 -3.0049 3.7968 10 6 2.7247 -3.6958 4.9926 11 6 1.8095 -4.8810 5.3067 12 6 2.3202 -5.6029 6.5552 13 1 3.3629 -5.8854 6.4106 14 6 1.4805 -6.8587 6.7975 15 6 2.0587 -7.6344 7.9529 16 6 3.0153 -8.6056 7.7237 17 6 3.5492 -9.3138 8.7840 18 6 3.1188 -9.0581 10.0726 19 6 2.1583 -8.0906 10.3013 20 6 1.6283 -7.3788 9.2414 21 7 2.2116 -4.7120 7.7132 22 6 0.9894 -4.2201 8.0864 23 1 0.1053 -4.4892 7.5274 24 6 0.8867 -3.3756 9.1832 25 7 -0.2881 -2.9024 9.5417 26 14 2.4156 -2.9107 10.1505 27 1 3.0121 -1.6799 9.5720 28 1 2.0485 -2.6637 11.5681 29 1 3.4016 -4.0189 10.0804 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2491 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.4424 -3.3265 3.3412 40 1 2.7266 -3.0052 5.8359 41 1 3.7381 -4.0559 4.8156 42 1 1.8073 -5.5716 4.4635 43 1 0.7962 -4.5205 5.4838 44 1 0.4551 -6.5710 7.0299 45 1 1.4894 -7.4801 5.9020 46 1 3.3480 -8.8087 6.7165 47 1 4.2993 -10.0699 8.6053 48 1 3.5327 -9.6145 10.9005 49 1 1.8218 -7.8912 11.3079 50 1 0.8774 -6.6234 9.4201 51 1 3.0062 -4.4674 8.2130 52 1 -0.3599 -2.3125 10.3084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725616049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:30 Heat of formation + Delta-G solvation = 11.776634 kcal Electronic energy + Delta-G solvation = -28676.891293 eV Core-core repulsion = 24834.437149 eV Total energy + Delta-G solvation = -3842.454144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.83218 -40.15423 -38.50183 -38.17036 -35.94337 -34.29689 -33.45471 -32.56358 -31.61534 -31.29465 -28.67554 -28.21776 -28.19114 -25.96050 -25.41033 -23.66335 -23.27063 -22.07914 -21.89256 -20.94324 -19.92727 -19.31423 -17.47327 -17.34699 -16.97433 -16.79959 -16.40722 -16.31289 -15.84227 -15.61674 -15.38186 -15.23362 -15.22416 -14.82029 -14.69165 -14.35866 -14.13149 -13.95433 -13.43158 -13.36748 -13.31297 -13.08902 -12.98339 -12.88057 -12.75047 -12.62363 -12.57304 -12.34994 -12.28751 -12.25435 -11.96810 -11.82705 -11.75757 -11.70086 -11.55907 -11.33667 -11.31036 -11.25221 -10.89348 -10.20215 -9.67149 -9.47933 -9.12933 -7.94108 -5.22522 0.44593 0.62230 0.68358 1.20854 1.36422 1.39037 1.43185 2.00511 2.41511 2.52316 3.03703 3.12224 3.40684 3.65461 3.92727 3.94574 3.95603 3.97348 4.13120 4.18494 4.28255 4.31351 4.33286 4.43567 4.57376 4.61872 4.73304 4.74733 4.75723 4.79673 4.83490 4.83587 4.92753 4.95626 4.95965 5.05986 5.06538 5.14693 5.19200 5.20831 5.34129 5.34828 5.36817 5.37169 5.41763 5.51529 5.71597 5.79372 5.87983 6.03690 6.13577 6.30121 6.32345 6.36719 7.00639 7.17599 7.95678 8.11230 9.27504 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.002325 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.480308 B =12039.649612 C =13306.585232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.039 4.039 6 C -0.269 4.269 7 C 0.626 3.374 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.132 3.868 11 C -0.126 4.126 12 C 0.186 3.814 13 H 0.081 0.919 14 C -0.085 4.085 15 C -0.072 4.072 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.116 4.116 21 N -0.745 5.745 22 C -0.183 4.183 23 H 0.071 0.929 24 C -0.058 4.058 25 N -0.984 5.984 26 Si 0.926 3.074 27 H -0.296 1.296 28 H -0.306 1.306 29 H -0.255 1.255 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.416 0.584 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.137 0.863 49 H 0.114 0.886 50 H 0.096 0.904 51 H 0.360 0.640 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -5.744 -21.042 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.042 4.042 6 C -0.272 4.272 7 C 0.414 3.586 8 O -0.459 6.459 9 N -0.347 5.347 10 C 0.009 3.991 11 C -0.166 4.166 12 C 0.077 3.923 13 H 0.099 0.901 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.143 4.143 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.134 4.134 21 N -0.386 5.386 22 C -0.314 4.314 23 H 0.089 0.911 24 C -0.249 4.249 25 N -0.637 5.637 26 Si 0.758 3.242 27 H -0.224 1.224 28 H -0.234 1.234 29 H -0.180 1.180 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.155 0.845 49 H 0.132 0.868 50 H 0.114 0.886 51 H 0.191 0.809 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.911 -5.488 -20.607 21.883 hybrid contribution 0.179 0.883 1.694 1.919 sum 5.090 -4.605 -18.913 20.120 Atomic orbital electron populations 1.21939 0.90806 1.03320 1.03736 1.18335 0.97065 0.94697 0.86893 1.21955 1.01478 0.92853 1.03755 1.21916 1.01448 1.00833 0.95328 1.23423 0.93886 0.93646 0.93200 1.20620 1.04925 1.04323 0.97356 1.14992 0.82441 0.80000 0.81190 1.90817 1.27742 1.67087 1.60257 1.45795 1.30780 1.28501 1.29606 1.21288 0.98159 0.94350 0.85308 1.22121 0.99060 0.96093 0.99287 1.20361 0.98257 0.88308 0.85384 0.90088 1.21026 0.99289 0.96103 0.96009 1.19931 0.96808 0.95989 0.94488 1.21317 0.96719 0.95968 1.00335 1.21408 1.00374 1.00371 0.92356 1.21334 0.97594 0.98278 0.98190 1.21319 0.98604 0.97514 0.98788 1.21196 1.00275 0.98261 0.93696 1.42837 1.05238 1.56726 1.33795 1.18804 0.86730 1.18602 1.07276 0.91090 1.25124 0.97514 1.01682 1.00588 1.69828 1.23885 1.39754 1.30200 0.85821 0.81974 0.78382 0.78067 1.22373 1.23365 1.17979 0.92892 0.88456 0.91731 0.92563 0.88267 0.92936 0.91784 0.88447 0.92524 0.74714 0.93866 0.91182 0.88254 0.92420 0.93063 0.88585 0.83751 0.83577 0.84481 0.86772 0.88600 0.80853 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.43 71.98 0.61 -1.01 16 2 C 0.03 0.44 0.95 -53.99 -0.05 0.38 16 3 C -0.14 -1.84 8.43 71.98 0.61 -1.24 16 4 C -0.14 -1.42 8.43 71.98 0.61 -0.81 16 5 C -0.04 -0.91 11.77 31.13 0.37 -0.55 16 6 C -0.27 -7.97 13.61 30.02 0.41 -7.56 16 7 C 0.63 21.88 7.65 85.49 0.65 22.53 16 8 O -0.58 -25.19 17.09 -4.08 -0.07 -25.26 16 9 N -0.70 -20.62 5.55 -470.76 -2.61 -23.23 16 10 C 0.13 4.26 5.56 86.38 0.48 4.74 16 11 C -0.13 -3.59 4.73 30.59 0.14 -3.45 16 12 C 0.19 5.92 2.67 44.99 0.12 6.04 16 13 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.09 -2.57 4.76 29.85 0.14 -2.43 16 15 C -0.07 -2.29 4.95 -19.87 -0.10 -2.39 16 16 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 17 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 18 C -0.14 -3.63 10.05 22.27 0.22 -3.40 16 19 C -0.14 -4.74 10.05 22.27 0.22 -4.52 16 20 C -0.12 -4.33 9.31 22.27 0.21 -4.13 16 21 N -0.74 -31.56 3.93 -322.94 -1.27 -32.83 16 22 C -0.18 -9.46 8.39 84.03 0.70 -8.76 16 23 H 0.07 3.97 6.87 -2.91 -0.02 3.95 16 24 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 25 N -0.98 -62.36 13.97 21.65 0.30 -62.06 16 26 Si 0.93 47.08 27.73 68.60 1.90 48.99 16 27 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 28 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 29 H -0.25 -11.91 6.52 99.48 0.65 -11.26 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.42 9.62 8.44 -92.71 -0.78 8.84 16 40 H 0.04 1.79 7.75 -2.39 -0.02 1.77 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 1.94 7.09 -2.39 -0.02 1.92 16 44 H 0.05 1.85 7.07 -2.39 -0.02 1.84 16 45 H 0.10 2.17 8.08 -2.38 -0.02 2.15 16 46 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 47 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 49 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 50 H 0.10 4.32 7.39 -2.91 -0.02 4.29 16 51 H 0.36 15.84 5.89 -92.70 -0.55 15.29 16 52 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -76.15 430.81 4.03 -72.12 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.48 Total: 37.52 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 6.25 Total: -15.25 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -3.58 Total: -118.12 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.07 Total: -25.26 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.90 Total: 48.99 kcal Total: -76.15 4.03 -72.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725616049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.901 kcal (2) G-P(sol) polarization free energy of solvation -76.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds