Wall clock time and date at job start Wed Apr 1 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47140 * 2 1 4 4 C 1.53001 * 109.47671 * 239.99746 * 2 1 3 5 5 C 1.52999 * 109.46989 * 119.99722 * 2 1 3 6 6 H 1.09007 * 109.47188 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.47457 * 60.00514 * 5 2 1 8 8 N 1.46496 * 109.47205 * 185.00151 * 7 5 2 9 9 C 1.36945 * 119.99718 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99756 * 359.97438 * 9 8 7 11 11 C 1.38805 * 119.99878 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47187 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 300.00154 * 13 11 9 16 16 H 1.48498 * 109.47018 * 60.00200 * 13 11 9 17 17 N 1.46503 * 109.47260 * 300.00114 * 5 2 1 18 18 C 1.34773 * 119.99980 * 274.99713 * 17 5 2 19 19 O 1.21279 * 120.00434 * 0.02562 * 18 17 5 20 20 C 1.50703 * 119.99703 * 179.97438 * 18 17 5 21 21 H 1.08994 * 115.54163 * 325.80489 * 20 18 17 22 22 C 1.53047 * 117.47834 * 180.21500 * 20 18 17 23 23 H 1.08997 * 119.41227 * 140.81866 * 22 20 18 24 24 C 1.54978 * 117.62142 * 343.45275 * 22 20 18 25 25 C 1.50968 * 107.18397 * 296.95154 * 24 22 20 26 26 C 1.38785 * 129.71931 * 179.89193 * 25 24 22 27 27 C 1.38008 * 120.30963 * 180.02562 * 26 25 24 28 28 C 1.38252 * 119.88202 * 359.97438 * 27 26 25 29 29 C 1.38020 * 119.88520 * 359.97438 * 28 27 26 30 30 C 1.37806 * 110.46420 * 359.96140 * 25 24 22 31 31 C 1.50945 * 110.47981 * 359.94389 * 30 25 24 32 32 H 1.09007 * 117.16444 * 220.04211 * 31 30 25 33 33 H 1.08997 * 109.47215 * 300.00085 * 1 2 3 34 34 H 1.09004 * 109.47090 * 60.00128 * 1 2 3 35 35 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 36 36 H 1.08994 * 109.47034 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.46506 * 299.99934 * 3 2 1 38 38 H 1.09004 * 109.46988 * 59.99548 * 3 2 1 39 39 H 1.08995 * 109.46739 * 300.00295 * 4 2 1 40 40 H 1.09004 * 109.46761 * 59.99924 * 4 2 1 41 41 H 1.08996 * 109.47289 * 179.97438 * 4 2 1 42 42 H 1.08997 * 109.46922 * 64.99193 * 7 5 2 43 43 H 1.09000 * 109.46483 * 305.00012 * 7 5 2 44 44 H 0.96996 * 120.00499 * 359.97438 * 8 7 5 45 45 H 0.97001 * 119.99885 * 179.97438 * 12 11 9 46 46 H 0.96999 * 119.99599 * 95.00503 * 17 5 2 47 47 H 1.09000 * 109.61842 * 177.68232 * 24 22 20 48 48 H 1.09002 * 110.24170 * 56.56967 * 24 22 20 49 49 H 1.07998 * 119.84436 * 0.06875 * 26 25 24 50 50 H 1.08002 * 120.06154 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.06079 * 180.02562 * 28 27 26 52 52 H 1.07997 * 119.84067 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1300 -0.7208 1.2495 7 6 1.5300 -2.1637 1.2493 8 7 1.9175 -2.8186 2.5012 9 6 1.5681 -4.1231 2.7282 10 1 1.0064 -4.6689 1.9845 11 6 1.9357 -4.7438 3.9141 12 7 2.6197 -4.0784 4.8206 13 14 1.4583 -6.5230 4.2241 14 1 1.9671 -6.9476 5.5530 15 1 -0.0208 -6.6508 4.1958 16 1 2.0499 -7.3851 3.1696 17 7 1.5515 -0.0305 2.4454 18 6 2.2283 1.0262 2.9369 19 8 3.2414 1.4058 2.3888 20 6 1.7256 1.7370 4.1671 21 1 0.6418 1.7829 4.2734 22 6 2.5361 2.9328 4.6725 23 1 2.0142 3.8100 5.0549 24 6 3.9865 3.0903 4.1498 25 6 4.7645 1.8862 4.6234 26 6 6.0966 1.5547 4.4195 27 6 6.6131 0.3892 4.9480 28 6 5.8004 -0.4525 5.6846 29 6 4.4757 -0.1238 5.8893 30 6 3.9539 1.0467 5.3563 31 6 2.5555 1.6078 5.4455 32 1 2.0408 1.5119 6.4016 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6765 1.9564 0.8900 39 1 1.6767 -1.7489 -1.2491 40 1 1.6767 -0.2075 -2.1392 41 1 3.1300 -0.7208 -1.2493 42 1 1.9646 -2.7027 0.4075 43 1 0.4437 -2.1650 1.1597 44 1 2.4216 -2.3283 3.1693 45 1 2.8763 -4.5121 5.6495 46 1 0.7411 -0.3340 2.8837 47 1 4.4259 4.0004 4.5581 48 1 3.9925 3.1315 3.0606 49 1 6.7323 2.2123 3.8451 50 1 7.6503 0.1349 4.7865 51 1 6.2017 -1.3651 6.0999 52 1 3.8414 -0.7820 6.4644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725751906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:01 Heat of formation + Delta-G solvation = 30.368009 kcal Electronic energy + Delta-G solvation = -31869.237590 eV Core-core repulsion = 28027.589629 eV Total energy + Delta-G solvation = -3841.647962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06051 -39.36315 -37.48906 -36.07806 -34.37852 -33.10844 -31.46038 -30.94380 -30.19844 -27.80728 -27.34855 -27.09103 -26.69048 -24.46556 -23.41536 -22.25921 -21.36100 -20.84923 -20.17406 -19.44461 -18.43987 -17.16096 -16.86400 -15.75775 -15.73788 -15.50507 -15.09156 -14.74281 -14.47120 -14.32534 -13.88508 -13.72593 -13.40153 -13.36002 -13.12935 -13.04242 -12.73306 -12.65523 -12.36256 -12.16098 -11.96769 -11.82961 -11.75120 -11.60836 -11.32131 -11.17164 -11.04778 -10.94433 -10.79345 -10.68333 -10.51882 -10.45693 -10.33917 -10.23608 -10.11808 -9.89088 -9.70843 -9.07359 -8.85260 -8.47432 -8.31288 -8.07495 -6.90633 -5.74624 -3.03817 1.67713 1.83949 2.90462 3.43043 3.48041 3.48469 3.53372 3.81029 4.16625 4.57312 4.58553 4.68879 4.95700 5.00313 5.03239 5.08392 5.17324 5.30163 5.31390 5.40763 5.45910 5.55560 5.56534 5.62622 5.73870 5.79229 5.83475 5.83659 5.93446 5.94792 5.97050 6.04659 6.08832 6.12368 6.13960 6.16513 6.21433 6.25221 6.35614 6.42199 6.50982 6.51521 6.54380 6.60425 6.70008 6.81435 6.83393 6.94939 7.03112 7.10161 7.40274 7.69492 8.02591 8.42801 8.73579 9.54741 10.12046 10.47928 11.46884 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.005244 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.690978 B = 5337.840128 C = 7652.482663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.140 4.140 5 C 0.153 3.847 6 H 0.083 0.917 7 C 0.142 3.858 8 N -0.729 5.729 9 C -0.242 4.242 10 H 0.068 0.932 11 C -0.010 4.010 12 N -0.926 5.926 13 Si 0.904 3.096 14 H -0.292 1.292 15 H -0.287 1.287 16 H -0.287 1.287 17 N -0.705 5.705 18 C 0.544 3.456 19 O -0.531 6.531 20 C -0.158 4.158 21 H 0.127 0.873 22 C -0.126 4.126 23 H 0.126 0.874 24 C -0.055 4.055 25 C -0.060 4.060 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.122 4.122 29 C -0.079 4.079 30 C -0.083 4.083 31 C -0.090 4.090 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.027 0.973 44 H 0.387 0.613 45 H 0.254 0.746 46 H 0.401 0.599 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 15.695 -2.523 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.185 4.185 4 C -0.198 4.198 5 C 0.048 3.952 6 H 0.102 0.898 7 C 0.014 3.986 8 N -0.374 5.374 9 C -0.373 4.373 10 H 0.086 0.914 11 C -0.206 4.206 12 N -0.574 5.574 13 Si 0.735 3.265 14 H -0.218 1.218 15 H -0.214 1.214 16 H -0.214 1.214 17 N -0.354 5.354 18 C 0.331 3.669 19 O -0.409 6.409 20 C -0.179 4.179 21 H 0.145 0.855 22 C -0.145 4.145 23 H 0.144 0.856 24 C -0.091 4.091 25 C -0.060 4.060 26 C -0.135 4.135 27 C -0.134 4.134 28 C -0.140 4.140 29 C -0.097 4.097 30 C -0.083 4.083 31 C -0.109 4.109 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.235 0.765 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.131 0.869 50 H 0.135 0.865 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.428 15.790 -2.924 16.064 hybrid contribution -0.644 -1.351 0.697 1.651 sum -0.215 14.438 -2.227 14.611 Atomic orbital electron populations 1.21900 0.94825 1.02015 1.01014 1.20894 0.95714 0.96066 0.95079 1.21868 1.01553 0.94719 1.00315 1.21881 1.01125 1.00518 0.96290 1.21196 0.99595 0.91503 0.82931 0.89844 1.21080 0.97233 0.89215 0.91087 1.42342 1.66909 1.11531 1.16649 1.19139 1.28980 0.88338 1.00847 0.91424 1.24709 1.00900 0.98032 0.96996 1.69670 1.43066 1.36041 1.08651 0.86320 0.77911 0.85212 0.77009 1.21760 1.21382 1.21380 1.45867 1.29134 1.31091 1.29338 1.19420 0.83543 0.80223 0.83735 1.90614 1.24385 1.65527 1.60341 1.22371 0.98887 1.02299 0.94368 0.85512 1.23227 0.96863 0.91769 1.02624 0.85572 1.20638 0.90209 0.94947 1.03337 1.20217 0.93395 0.96679 0.95665 1.20456 0.94262 0.97598 1.01167 1.20953 0.99541 0.94551 0.98308 1.20958 0.93861 0.99363 0.99842 1.20723 0.95223 0.94815 0.98919 1.19502 0.93167 0.95644 0.99970 1.21361 0.94504 0.99988 0.95038 0.86146 0.92905 0.93350 0.92014 0.92078 0.94260 0.92806 0.91985 0.93014 0.92663 0.95017 0.95572 0.77903 0.93617 0.76457 0.91299 0.87302 0.86933 0.86477 0.86089 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.97 37.15 0.30 -1.48 16 2 C -0.08 -1.06 0.62 -154.51 -0.10 -1.15 16 3 C -0.13 -1.78 7.00 37.16 0.26 -1.52 16 4 C -0.14 -1.84 8.12 37.16 0.30 -1.54 16 5 C 0.15 2.58 1.69 -67.93 -0.11 2.47 16 6 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 7 C 0.14 2.77 5.10 -4.04 -0.02 2.75 16 8 N -0.73 -18.02 5.43 -59.91 -0.33 -18.34 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 13 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.70 -11.28 3.64 -53.80 -0.20 -11.48 16 18 C 0.54 8.67 5.27 -10.99 -0.06 8.61 16 19 O -0.53 -9.40 9.57 5.56 0.05 -9.35 16 20 C -0.16 -2.09 6.18 -91.77 -0.57 -2.66 16 21 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 22 C -0.13 -1.51 7.20 -89.34 -0.64 -2.15 16 23 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 24 C -0.05 -0.73 5.78 -26.71 -0.15 -0.89 16 25 C -0.06 -0.94 4.86 -104.45 -0.51 -1.44 16 26 C -0.12 -1.79 10.04 -39.46 -0.40 -2.19 16 27 C -0.12 -1.78 10.04 -39.66 -0.40 -2.18 16 28 C -0.12 -2.05 10.05 -39.66 -0.40 -2.44 16 29 C -0.08 -1.39 10.04 -39.46 -0.40 -1.79 16 30 C -0.08 -1.36 5.28 -104.45 -0.55 -1.91 16 31 C -0.09 -1.25 6.81 -91.46 -0.62 -1.88 16 32 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 36 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.79 5.78 -51.93 -0.30 0.49 16 39 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.64 6.71 -51.93 -0.35 0.29 16 43 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 44 H 0.39 10.29 7.33 -40.82 -0.30 9.99 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.40 6.30 8.60 -40.82 -0.35 5.95 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.11 1.61 6.15 -51.93 -0.32 1.29 16 49 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 50 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 51 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 52 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -30.82 399.93 -11.46 -42.28 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -8.41 Total: 18.79 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.31 Total: -18.54 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.20 Total: -56.36 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.05 Total: -9.35 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.82 -11.46 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725751906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.645 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds