Wall clock time and date at job start Wed Apr 1 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47140 * 2 1 4 4 C 1.53001 * 109.47671 * 239.99746 * 2 1 3 5 5 C 1.52999 * 109.46989 * 119.99722 * 2 1 3 6 6 H 1.09007 * 109.47188 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.47457 * 60.00514 * 5 2 1 8 8 N 1.46496 * 109.47205 * 185.00151 * 7 5 2 9 9 C 1.36945 * 119.99718 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99756 * 359.97438 * 9 8 7 11 11 C 1.38805 * 119.99878 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47187 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 300.00154 * 13 11 9 16 16 H 1.48498 * 109.47018 * 60.00200 * 13 11 9 17 17 N 1.46503 * 109.47260 * 300.00114 * 5 2 1 18 18 C 1.34773 * 119.99980 * 274.99713 * 17 5 2 19 19 O 1.21279 * 120.00434 * 0.02562 * 18 17 5 20 20 C 1.50703 * 119.99703 * 179.97438 * 18 17 5 21 21 H 1.08994 * 115.54163 * 325.80489 * 20 18 17 22 22 C 1.53047 * 117.47834 * 180.21500 * 20 18 17 23 23 H 1.08997 * 119.41227 * 140.81866 * 22 20 18 24 24 C 1.54978 * 117.62142 * 343.45275 * 22 20 18 25 25 C 1.50968 * 107.18397 * 296.95154 * 24 22 20 26 26 C 1.38785 * 129.71931 * 179.89193 * 25 24 22 27 27 C 1.38008 * 120.30963 * 180.02562 * 26 25 24 28 28 C 1.38252 * 119.88202 * 359.97438 * 27 26 25 29 29 C 1.38020 * 119.88520 * 359.97438 * 28 27 26 30 30 C 1.37806 * 110.46420 * 359.96140 * 25 24 22 31 31 C 1.50945 * 110.47981 * 359.94389 * 30 25 24 32 32 H 1.09007 * 117.16444 * 220.04211 * 31 30 25 33 33 H 1.08997 * 109.47215 * 300.00085 * 1 2 3 34 34 H 1.09004 * 109.47090 * 60.00128 * 1 2 3 35 35 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 36 36 H 1.08994 * 109.47034 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.46506 * 299.99934 * 3 2 1 38 38 H 1.09004 * 109.46988 * 59.99548 * 3 2 1 39 39 H 1.08995 * 109.46739 * 300.00295 * 4 2 1 40 40 H 1.09004 * 109.46761 * 59.99924 * 4 2 1 41 41 H 1.08996 * 109.47289 * 179.97438 * 4 2 1 42 42 H 1.08997 * 109.46922 * 64.99193 * 7 5 2 43 43 H 1.09000 * 109.46483 * 305.00012 * 7 5 2 44 44 H 0.96996 * 120.00499 * 359.97438 * 8 7 5 45 45 H 0.97001 * 119.99885 * 179.97438 * 12 11 9 46 46 H 0.96999 * 119.99599 * 95.00503 * 17 5 2 47 47 H 1.09000 * 109.61842 * 177.68232 * 24 22 20 48 48 H 1.09002 * 110.24170 * 56.56967 * 24 22 20 49 49 H 1.07998 * 119.84436 * 0.06875 * 26 25 24 50 50 H 1.08002 * 120.06154 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.06079 * 180.02562 * 28 27 26 52 52 H 1.07997 * 119.84067 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1300 -0.7208 1.2495 7 6 1.5300 -2.1637 1.2493 8 7 1.9175 -2.8186 2.5012 9 6 1.5681 -4.1231 2.7282 10 1 1.0064 -4.6689 1.9845 11 6 1.9357 -4.7438 3.9141 12 7 2.6197 -4.0784 4.8206 13 14 1.4583 -6.5230 4.2241 14 1 1.9671 -6.9476 5.5530 15 1 -0.0208 -6.6508 4.1958 16 1 2.0499 -7.3851 3.1696 17 7 1.5515 -0.0305 2.4454 18 6 2.2283 1.0262 2.9369 19 8 3.2414 1.4058 2.3888 20 6 1.7256 1.7370 4.1671 21 1 0.6418 1.7829 4.2734 22 6 2.5361 2.9328 4.6725 23 1 2.0142 3.8100 5.0549 24 6 3.9865 3.0903 4.1498 25 6 4.7645 1.8862 4.6234 26 6 6.0966 1.5547 4.4195 27 6 6.6131 0.3892 4.9480 28 6 5.8004 -0.4525 5.6846 29 6 4.4757 -0.1238 5.8893 30 6 3.9539 1.0467 5.3563 31 6 2.5555 1.6078 5.4455 32 1 2.0408 1.5119 6.4016 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6765 1.9564 0.8900 39 1 1.6767 -1.7489 -1.2491 40 1 1.6767 -0.2075 -2.1392 41 1 3.1300 -0.7208 -1.2493 42 1 1.9646 -2.7027 0.4075 43 1 0.4437 -2.1650 1.1597 44 1 2.4216 -2.3283 3.1693 45 1 2.8763 -4.5121 5.6495 46 1 0.7411 -0.3340 2.8837 47 1 4.4259 4.0004 4.5581 48 1 3.9925 3.1315 3.0606 49 1 6.7323 2.2123 3.8451 50 1 7.6503 0.1349 4.7865 51 1 6.2017 -1.3651 6.0999 52 1 3.8414 -0.7820 6.4644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725751906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:00 Heat of formation + Delta-G solvation = 14.405636 kcal Electronic energy + Delta-G solvation = -31869.929771 eV Core-core repulsion = 28027.589629 eV Total energy + Delta-G solvation = -3842.340142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21166 -40.62729 -38.73856 -37.27893 -36.16230 -34.50426 -33.00858 -32.50113 -31.41562 -29.39197 -28.48769 -28.13518 -27.86083 -26.03133 -24.96716 -23.55828 -22.86802 -22.08084 -21.23625 -20.68007 -19.79891 -18.94794 -18.10801 -17.12396 -16.97962 -16.78961 -16.51202 -16.21586 -15.84678 -15.57059 -15.37692 -15.10055 -14.83685 -14.65113 -14.50315 -14.26632 -14.17070 -13.97053 -13.57873 -13.51170 -13.14959 -13.01977 -13.00652 -12.90713 -12.71526 -12.61640 -12.49090 -12.36337 -12.21329 -12.13703 -11.98523 -11.73132 -11.69672 -11.60643 -11.44217 -11.27389 -11.15848 -10.91282 -10.27864 -9.77830 -9.57448 -9.28396 -8.95806 -7.90125 -5.19745 0.44429 0.56148 1.46906 1.49191 1.55045 1.70963 2.31478 2.56616 2.68280 2.97922 3.42014 3.48573 3.63880 3.69410 3.84359 3.91466 4.00727 4.06701 4.14477 4.20110 4.20964 4.26083 4.28691 4.37724 4.47287 4.56575 4.63555 4.67756 4.75638 4.84062 4.86392 4.88204 4.91590 4.92683 4.98153 5.03244 5.08601 5.10548 5.14635 5.18648 5.25481 5.27462 5.33747 5.42261 5.49649 5.52361 5.58567 5.60471 5.67175 5.75965 5.79846 6.17618 6.28655 6.75298 7.36289 7.48322 8.10642 8.35160 9.31231 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.005244 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.690978 B = 5337.840128 C = 7652.482663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.139 4.139 5 C 0.166 3.834 6 H 0.046 0.954 7 C 0.144 3.856 8 N -0.740 5.740 9 C -0.246 4.246 10 H 0.074 0.926 11 C -0.068 4.068 12 N -0.958 5.958 13 Si 0.968 3.032 14 H -0.298 1.298 15 H -0.276 1.276 16 H -0.283 1.283 17 N -0.705 5.705 18 C 0.537 3.463 19 O -0.552 6.552 20 C -0.163 4.163 21 H 0.157 0.843 22 C -0.099 4.099 23 H 0.168 0.832 24 C -0.056 4.056 25 C -0.070 4.070 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.142 4.142 29 C -0.108 4.108 30 C -0.097 4.097 31 C -0.111 4.111 32 H 0.136 0.864 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.042 0.958 44 H 0.374 0.626 45 H 0.248 0.752 46 H 0.403 0.597 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.134 0.866 50 H 0.141 0.859 51 H 0.121 0.879 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 17.399 -3.657 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.174 4.174 4 C -0.197 4.197 5 C 0.060 3.940 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.383 5.383 9 C -0.378 4.378 10 H 0.092 0.908 11 C -0.261 4.261 12 N -0.608 5.608 13 Si 0.798 3.202 14 H -0.225 1.225 15 H -0.202 1.202 16 H -0.209 1.209 17 N -0.354 5.354 18 C 0.325 3.675 19 O -0.431 6.431 20 C -0.184 4.184 21 H 0.175 0.825 22 C -0.117 4.117 23 H 0.185 0.815 24 C -0.092 4.092 25 C -0.070 4.070 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.160 4.160 29 C -0.126 4.126 30 C -0.097 4.097 31 C -0.129 4.129 32 H 0.153 0.847 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.206 0.794 45 H 0.057 0.943 46 H 0.238 0.762 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.152 0.848 50 H 0.158 0.842 51 H 0.140 0.860 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.305 17.498 -4.098 18.019 hybrid contribution -0.054 -1.882 0.974 2.119 sum -1.358 15.617 -3.124 15.984 Atomic orbital electron populations 1.21852 0.93151 1.02011 1.02219 1.20847 0.96907 0.95778 0.93598 1.21738 1.00045 0.94595 1.00990 1.21879 1.00507 1.00481 0.96841 1.20935 0.97298 0.90634 0.85084 0.93622 1.21203 0.97862 0.90456 0.88722 1.42497 1.66776 1.11037 1.17988 1.19525 1.28083 0.89455 1.00752 0.90767 1.25479 1.01620 1.01890 0.97133 1.69841 1.44619 1.37448 1.08888 0.85301 0.77950 0.80656 0.76330 1.22465 1.20242 1.20910 1.45860 1.29213 1.31141 1.29233 1.19962 0.83168 0.80030 0.84357 1.90611 1.25205 1.66104 1.61177 1.22527 1.00540 1.02948 0.92368 0.82518 1.23477 0.95909 0.92080 1.00275 0.81509 1.20694 0.91151 0.94850 1.02528 1.20645 0.93643 0.97525 0.95224 1.20837 0.94814 0.97807 1.00964 1.21239 1.00560 0.94412 0.97765 1.21129 0.94088 1.00003 1.00759 1.20793 0.95692 0.95808 1.00297 1.19842 0.95024 0.95154 0.99634 1.21495 0.93566 1.01787 0.96051 0.84675 0.92621 0.91265 0.92566 0.94284 0.92148 0.93407 0.92437 0.90643 0.93739 0.95257 0.94057 0.79424 0.94315 0.76241 0.88655 0.88625 0.84797 0.84154 0.86050 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.97 71.98 0.57 -2.50 16 2 C -0.07 -1.86 0.62 -52.18 -0.03 -1.89 16 3 C -0.12 -3.08 7.00 71.98 0.50 -2.58 16 4 C -0.14 -3.48 8.12 71.98 0.58 -2.89 16 5 C 0.17 5.66 1.69 44.99 0.08 5.74 16 6 H 0.05 1.91 7.58 -2.38 -0.02 1.89 16 7 C 0.14 5.65 5.10 86.38 0.44 6.09 16 8 N -0.74 -37.28 5.43 -343.47 -1.87 -39.15 16 9 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 10 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 11 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 12 N -0.96 -58.10 13.06 21.65 0.28 -57.82 16 13 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 N -0.70 -22.53 3.64 -442.52 -1.61 -24.14 16 18 C 0.54 16.91 5.27 87.66 0.46 17.38 16 19 O -0.55 -19.64 9.57 -3.03 -0.03 -19.67 16 20 C -0.16 -4.01 6.18 -11.54 -0.07 -4.08 16 21 H 0.16 2.87 8.14 -2.39 -0.02 2.85 16 22 C -0.10 -2.09 7.20 -9.96 -0.07 -2.16 16 23 H 0.17 2.18 8.14 -2.39 -0.02 2.16 16 24 C -0.06 -1.39 5.78 30.61 0.18 -1.21 16 25 C -0.07 -2.20 4.86 -19.75 -0.10 -2.29 16 26 C -0.13 -3.88 10.04 22.35 0.22 -3.65 16 27 C -0.12 -3.85 10.04 22.22 0.22 -3.63 16 28 C -0.14 -5.06 10.05 22.22 0.22 -4.84 16 29 C -0.11 -4.07 10.04 22.35 0.22 -3.84 16 30 C -0.10 -3.25 5.28 -19.76 -0.10 -3.35 16 31 C -0.11 -2.95 6.81 -11.34 -0.08 -3.03 16 32 H 0.14 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.05 1.24 7.60 -2.39 -0.02 1.22 16 34 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.06 1.34 6.32 -2.38 -0.02 1.33 16 36 H 0.04 1.20 7.53 -2.39 -0.02 1.18 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.32 5.78 -2.38 -0.01 1.31 16 39 H 0.06 1.48 6.54 -2.39 -0.02 1.46 16 40 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.03 1.18 6.71 -2.39 -0.02 1.17 16 43 H 0.04 1.53 6.17 -2.39 -0.01 1.52 16 44 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.40 12.52 8.60 -92.71 -0.80 11.72 16 47 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.10 2.71 6.15 -2.39 -0.01 2.69 16 49 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 50 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 51 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 52 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -68.61 399.93 2.83 -65.79 By element: Atomic # 1 Polarization: 56.39 SS G_CDS: -0.54 Total: 55.84 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.57 Total: -28.92 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -3.19 Total: -121.11 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.03 Total: -19.67 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -68.61 2.83 -65.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725751906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.192 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds