Wall clock time and date at job start Wed Apr 1 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 C 1.53002 * 109.46574 * 240.00108 * 2 1 3 5 5 C 1.53003 * 109.47089 * 120.00440 * 2 1 3 6 6 H 1.08998 * 109.46686 * 299.99200 * 5 2 1 7 7 C 1.53003 * 109.46565 * 179.97438 * 5 2 1 8 8 N 1.46499 * 109.46624 * 184.99673 * 7 5 2 9 9 C 1.36934 * 120.00131 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99893 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00489 * 179.97438 * 9 8 7 12 12 N 1.31613 * 119.99846 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00090 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47223 * 60.00254 * 13 11 9 15 15 H 1.48501 * 109.47054 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47138 * 300.00075 * 13 11 9 17 17 N 1.46496 * 109.47250 * 59.99633 * 5 2 1 18 18 C 1.34771 * 120.00351 * 274.99685 * 17 5 2 19 19 O 1.21281 * 119.99791 * 0.02562 * 18 17 5 20 20 C 1.50698 * 120.00398 * 180.02562 * 18 17 5 21 21 H 1.08999 * 115.53674 * 325.80209 * 20 18 17 22 22 C 1.52954 * 117.47939 * 111.39307 * 20 18 17 23 23 H 1.08995 * 118.97683 * 355.94242 * 22 20 18 24 24 C 1.50956 * 118.97226 * 201.36495 * 22 20 18 25 25 C 1.38789 * 129.72534 * 114.28763 * 24 22 20 26 26 C 1.38016 * 120.31454 * 180.17565 * 25 24 22 27 27 C 1.38258 * 119.88354 * 359.46265 * 26 25 24 28 28 C 1.38011 * 119.87531 * 0.26615 * 27 26 25 29 29 C 1.37800 * 110.47645 * 293.97855 * 24 22 20 30 30 C 1.50969 * 110.46645 * 0.11190 * 29 24 22 31 31 C 1.53410 * 60.79080 * 107.10610 * 22 20 18 32 32 H 1.09005 * 121.61194 * 252.03296 * 31 22 20 33 33 H 1.09001 * 109.46865 * 299.99432 * 1 2 3 34 34 H 1.08991 * 109.47171 * 59.99519 * 1 2 3 35 35 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 36 36 H 1.08998 * 109.46924 * 180.02562 * 3 2 1 37 37 H 1.08992 * 109.46992 * 300.00309 * 3 2 1 38 38 H 1.09001 * 109.46812 * 60.00535 * 3 2 1 39 39 H 1.09000 * 109.47244 * 299.99908 * 4 2 1 40 40 H 1.08996 * 109.47464 * 60.00531 * 4 2 1 41 41 H 1.09003 * 109.46596 * 179.97438 * 4 2 1 42 42 H 1.08991 * 109.47266 * 304.99510 * 7 5 2 43 43 H 1.09003 * 109.47409 * 64.99861 * 7 5 2 44 44 H 0.97003 * 120.00249 * 0.02562 * 8 7 5 45 45 H 0.97006 * 120.00260 * 179.97438 * 12 11 9 46 46 H 0.97003 * 119.99710 * 95.00111 * 17 5 2 47 47 H 1.08000 * 119.84542 * 359.89718 * 25 24 22 48 48 H 1.08002 * 120.06151 * 179.74837 * 26 25 24 49 49 H 1.07993 * 120.05707 * 180.23386 * 27 26 25 50 50 H 1.08008 * 119.84162 * 180.02562 * 28 27 26 51 51 H 1.08997 * 109.92248 * 119.62555 * 30 29 24 52 52 H 1.09003 * 109.92307 * 240.93340 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.6768 -0.2075 2.1392 7 6 3.5701 -0.7218 1.2488 8 7 4.0584 -1.5141 2.3802 9 6 5.4046 -1.6586 2.5846 10 1 6.1065 -1.1880 1.9119 11 6 5.8674 -2.4088 3.6569 12 7 5.0121 -2.9818 4.4770 13 14 7.7039 -2.6052 3.9361 14 1 8.3191 -1.2692 4.1410 15 1 7.9348 -3.4465 5.1378 16 1 8.3179 -3.2564 2.7511 17 7 1.5517 -2.1025 1.2492 18 6 0.3298 -2.3853 1.7425 19 8 -0.3657 -1.4962 2.1861 20 6 -0.1724 -3.8061 1.7430 21 1 0.1459 -4.4173 0.8984 22 6 -0.3271 -4.4996 3.0975 23 1 -0.0098 -3.9748 3.9986 24 6 -0.3456 -6.0081 3.1488 25 6 0.5629 -6.8874 3.7214 26 6 0.3537 -8.2497 3.6499 27 6 -0.7715 -8.7415 3.0147 28 6 -1.6788 -7.8683 2.4496 29 6 -1.4668 -6.4983 2.5153 30 6 -2.3062 -5.3653 1.9760 31 6 -1.5828 -4.0602 2.3336 32 1 -2.1866 -3.2152 2.6647 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3634 -1.0276 -0.0005 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9563 0.8901 39 1 1.6766 -1.7489 -1.2493 40 1 1.6766 -0.2074 -2.1393 41 1 3.1299 -0.7209 -1.2495 42 1 3.9330 -1.1564 0.3174 43 1 3.9338 0.3018 1.3381 44 1 3.4280 -1.9370 2.9841 45 1 5.3354 -3.5064 5.2261 46 1 2.1078 -2.8136 0.8941 47 1 1.4400 -6.5039 4.2214 48 1 1.0654 -8.9304 4.0933 49 1 -0.9399 -9.8068 2.9603 50 1 -2.5579 -8.2530 1.9539 51 1 -2.3986 -5.4540 0.8936 52 1 -3.2932 -5.3815 2.4383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725751920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:04 Heat of formation + Delta-G solvation = 20.887713 kcal Electronic energy + Delta-G solvation = -30530.698499 eV Core-core repulsion = 26688.639440 eV Total energy + Delta-G solvation = -3842.059058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97366 -39.73332 -37.70814 -36.40992 -34.41833 -33.14480 -31.80554 -31.05325 -30.50082 -27.97395 -27.66928 -27.11290 -26.74104 -24.61038 -23.53172 -22.27865 -21.47195 -20.94401 -20.37543 -19.71980 -18.51407 -17.48299 -16.86480 -16.25633 -15.89273 -15.47398 -15.21884 -15.08337 -14.71212 -14.30148 -13.90947 -13.80216 -13.62241 -13.51850 -13.33588 -13.12023 -12.93152 -12.70119 -12.57985 -12.49392 -12.19850 -11.91809 -11.80094 -11.75398 -11.36304 -11.34484 -11.20535 -11.09014 -10.85676 -10.80728 -10.72340 -10.60696 -10.46076 -10.25155 -10.02321 -9.91933 -9.73992 -9.50514 -8.89230 -8.79210 -8.59211 -8.47364 -6.94732 -5.78206 -3.07523 1.24502 1.34370 2.73792 3.29647 3.42198 3.46957 3.47617 3.61775 3.93081 4.39554 4.50425 4.56301 4.79396 4.83409 4.96701 5.00653 5.02428 5.06318 5.08256 5.14608 5.27826 5.33875 5.44719 5.53095 5.53742 5.59184 5.66428 5.71015 5.75062 5.80826 5.91513 5.92368 5.94044 5.97896 6.04868 6.06256 6.10785 6.14207 6.18675 6.22386 6.32853 6.39145 6.48074 6.48289 6.49828 6.53256 6.64512 6.66469 6.75866 6.95403 7.00249 7.67001 7.91418 8.39680 8.58760 9.51526 10.08009 10.43470 11.43958 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007388 B = 0.004093 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3789.143117 B = 6839.074737 C =10041.219339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.150 3.850 6 H 0.086 0.914 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.702 5.702 18 C 0.548 3.452 19 O -0.542 6.542 20 C -0.147 4.147 21 H 0.119 0.881 22 C -0.092 4.092 23 H 0.124 0.876 24 C -0.063 4.063 25 C -0.093 4.093 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.113 4.113 29 C -0.096 4.096 30 C -0.053 4.053 31 C -0.127 4.127 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.035 0.965 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.404 0.596 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.083 0.917 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 -5.593 -8.539 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.045 3.955 6 H 0.104 0.896 7 C 0.014 3.986 8 N -0.375 5.375 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.351 5.351 18 C 0.334 3.666 19 O -0.420 6.420 20 C -0.168 4.168 21 H 0.137 0.863 22 C -0.111 4.111 23 H 0.142 0.858 24 C -0.063 4.063 25 C -0.111 4.111 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.131 4.131 29 C -0.096 4.096 30 C -0.089 4.089 31 C -0.145 4.145 32 H 0.152 0.848 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.239 0.761 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.101 0.899 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.993 -4.940 -8.217 17.797 hybrid contribution 1.349 -0.729 0.296 1.562 sum -13.644 -5.669 -7.921 16.764 Atomic orbital electron populations 1.21882 0.94056 1.01810 1.00892 1.20900 0.96087 0.95504 0.95288 1.21886 1.01553 0.94949 1.01467 1.21912 1.01493 1.00011 0.96444 1.21273 0.94982 0.81560 0.97663 0.89622 1.21095 0.89313 0.95956 0.92261 1.42343 1.04836 1.60302 1.30066 1.19156 0.83333 1.26196 1.08680 0.91289 1.24719 0.97485 1.00530 0.97911 1.69654 1.32604 1.37946 1.17623 0.86296 0.85327 0.77535 0.77174 1.21285 1.21715 1.21302 1.45831 1.16689 1.10301 1.62252 1.19242 0.81590 0.88504 0.77251 1.90673 1.56672 1.47772 1.46856 1.22480 1.00456 0.95298 0.98604 0.86295 1.21395 1.02917 0.91248 0.95495 0.85794 1.19690 0.95177 0.93012 0.98441 1.20883 0.98793 0.92704 0.98708 1.21063 0.97855 0.95099 0.99980 1.21014 0.94700 0.99383 0.98678 1.20580 0.99814 0.91630 1.01037 1.20501 0.96566 0.94058 0.98450 1.20294 0.98101 0.89339 1.01199 1.23229 0.88870 0.99005 1.03404 0.84813 0.92035 0.94074 0.92853 0.91917 0.92926 0.92582 0.92891 0.93240 0.91932 0.95422 0.94775 0.78028 0.93495 0.76109 0.85420 0.85774 0.85998 0.86337 0.89886 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 7.00 37.16 0.26 -1.54 16 2 C -0.08 -1.05 0.62 -154.50 -0.10 -1.14 16 3 C -0.14 -1.80 8.12 37.16 0.30 -1.50 16 4 C -0.14 -1.77 7.97 37.16 0.30 -1.47 16 5 C 0.15 2.49 1.69 -67.93 -0.11 2.38 16 6 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 7 C 0.14 2.71 5.10 -4.04 -0.02 2.69 16 8 N -0.73 -17.87 5.43 -59.91 -0.33 -18.20 16 9 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 10 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 13 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.70 -11.14 3.64 -53.81 -0.20 -11.34 16 18 C 0.55 8.78 5.97 -10.99 -0.07 8.71 16 19 O -0.54 -9.91 13.46 5.56 0.07 -9.83 16 20 C -0.15 -2.01 5.87 -90.73 -0.53 -2.55 16 21 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 22 C -0.09 -1.31 6.51 -91.46 -0.60 -1.90 16 23 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 24 C -0.06 -0.86 5.94 -104.45 -0.62 -1.48 16 25 C -0.09 -1.25 10.04 -39.46 -0.40 -1.65 16 26 C -0.12 -1.40 10.05 -39.66 -0.40 -1.80 16 27 C -0.12 -1.23 10.05 -39.66 -0.40 -1.63 16 28 C -0.11 -1.18 10.04 -39.46 -0.40 -1.58 16 29 C -0.10 -1.13 6.12 -104.45 -0.64 -1.77 16 30 C -0.05 -0.54 6.58 -27.53 -0.18 -0.72 16 31 C -0.13 -1.56 6.63 -89.12 -0.59 -2.15 16 32 H 0.13 1.70 7.82 -51.93 -0.41 1.29 16 33 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.79 5.78 -51.93 -0.30 0.49 16 36 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 42 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 43 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 44 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.40 6.30 8.60 -40.82 -0.35 5.95 16 47 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -30.85 407.74 -11.53 -42.37 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -8.49 Total: 16.88 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -4.43 Total: -16.25 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.20 Total: -56.41 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.85 -11.53 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725751920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.261 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds