Wall clock time and date at job start Wed Apr 1 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00388 * 2 1 4 4 C 1.53003 * 109.46877 * 293.95624 * 3 2 1 5 5 C 1.52996 * 109.47330 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47363 * 59.99550 * 5 4 3 7 7 C 1.53003 * 109.47330 * 180.02562 * 5 4 3 8 8 C 1.53005 * 109.46732 * 299.99604 * 5 4 3 9 9 C 1.46906 * 110.99902 * 123.95217 * 2 1 3 10 10 C 1.53008 * 109.47062 * 163.92764 * 9 2 1 11 11 H 1.08991 * 110.88378 * 53.39370 * 10 9 2 12 12 C 1.55148 * 111.00235 * 177.27801 * 10 9 2 13 13 C 1.54325 * 102.94096 * 153.61268 * 12 10 9 14 14 N 1.47020 * 107.27306 * 337.80327 * 13 12 10 15 15 C 1.34774 * 125.64905 * 178.90143 * 14 13 12 16 16 O 1.21282 * 119.99783 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00274 * 0.02874 * 15 14 13 18 18 S 1.80994 * 109.47517 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00222 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99757 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99614 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47595 * 89.99938 * 23 21 19 25 25 H 1.48505 * 109.46959 * 210.00128 * 23 21 19 26 26 H 1.48500 * 109.47410 * 329.99392 * 23 21 19 27 27 C 1.47428 * 108.69778 * 359.17047 * 14 13 12 28 28 H 1.09001 * 109.47044 * 302.03070 * 1 2 3 29 29 H 1.09001 * 109.47189 * 62.02592 * 1 2 3 30 30 H 1.08997 * 109.47464 * 182.02823 * 1 2 3 31 31 H 1.09002 * 109.47205 * 53.94845 * 3 2 1 32 32 H 1.08995 * 109.47720 * 173.95526 * 3 2 1 33 33 H 1.09002 * 109.46568 * 299.99612 * 4 3 2 34 34 H 1.08999 * 109.47665 * 59.99150 * 4 3 2 35 35 H 1.08995 * 109.46907 * 60.00074 * 6 5 4 36 36 H 1.08997 * 109.47121 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.46875 * 300.00005 * 6 5 4 38 38 H 1.08995 * 109.47026 * 59.99426 * 7 5 4 39 39 H 1.08997 * 109.46674 * 179.97438 * 7 5 4 40 40 H 1.09002 * 109.46568 * 299.99561 * 7 5 4 41 41 H 1.09004 * 109.47046 * 60.00300 * 8 5 4 42 42 H 1.09004 * 109.46862 * 179.97438 * 8 5 4 43 43 H 1.08994 * 109.47086 * 299.99787 * 8 5 4 44 44 H 1.09002 * 109.47047 * 43.92624 * 9 2 1 45 45 H 1.08998 * 109.47004 * 283.92185 * 9 2 1 46 46 H 1.09004 * 110.72573 * 35.24937 * 12 10 9 47 47 H 1.09001 * 110.87498 * 272.04586 * 12 10 9 48 48 H 1.09007 * 109.87912 * 218.38750 * 13 12 10 49 49 H 1.09000 * 110.00989 * 97.29769 * 13 12 10 50 50 H 1.09003 * 109.47057 * 59.99695 * 17 15 14 51 51 H 1.09002 * 109.47243 * 300.00065 * 17 15 14 52 52 H 0.97006 * 119.99560 * 179.97438 * 22 21 19 53 53 H 1.09000 * 110.36114 * 142.73764 * 27 14 13 54 54 H 1.08994 * 110.36463 * 265.05549 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1803 3.4855 -1.3187 6 6 3.7023 3.4470 -1.1670 7 6 1.8157 4.1717 -2.6367 8 6 1.5711 4.2662 -0.1523 9 6 1.9954 -0.7660 1.1377 10 6 3.4723 -1.0858 0.8975 11 1 4.0350 -0.1791 0.6755 12 6 4.0829 -1.8366 2.1101 13 6 5.2371 -2.6395 1.4739 14 7 4.9321 -2.7831 0.0429 15 6 5.7076 -3.4053 -0.8670 16 8 5.3551 -3.4632 -2.0260 17 6 7.0127 -4.0291 -0.4443 18 16 7.8154 -4.7813 -1.8815 19 6 9.2725 -5.4160 -1.1209 20 1 9.4345 -5.2748 -0.0625 21 6 10.2127 -6.0964 -1.8822 22 7 10.0155 -6.2680 -3.1722 23 14 11.7571 -6.7699 -1.0756 24 1 11.5046 -8.1543 -0.6013 25 1 12.8670 -6.7793 -2.0623 26 1 12.1278 -5.9113 0.0780 27 6 3.6405 -2.1280 -0.2331 28 1 -0.3633 0.5451 0.8712 29 1 -0.3633 0.4821 -0.9076 30 1 -0.3634 -1.0270 0.0364 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1082 33 1 2.0658 1.5014 -2.1491 34 1 0.5472 2.0844 -1.4266 35 1 4.1362 2.8908 -1.9979 36 1 4.0932 4.4645 -1.1668 37 1 3.9615 2.9584 -0.2278 38 1 0.7314 4.1991 -2.7442 39 1 2.2064 5.1893 -2.6366 40 1 2.2494 3.6156 -3.4678 41 1 1.8305 3.7776 0.7869 42 1 1.9625 5.2836 -0.1523 43 1 0.4869 4.2937 -0.2604 44 1 1.4345 -1.6949 1.2409 45 1 1.8947 -0.1775 2.0496 46 1 3.3490 -2.5059 2.5589 47 1 4.4646 -1.1333 2.8503 48 1 5.3048 -3.6231 1.9390 49 1 6.1781 -2.1042 1.6006 50 1 6.8226 -4.7950 0.3076 51 1 7.6631 -3.2616 -0.0247 52 1 10.6728 -6.7433 -3.7043 53 1 3.6657 -1.6340 -1.2044 54 1 2.8306 -2.8565 -0.1980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732065639.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:24 Heat of formation + Delta-G solvation = -72.762059 kcal Electronic energy + Delta-G solvation = -28070.849418 eV Core-core repulsion = 24360.173352 eV Total energy + Delta-G solvation = -3710.676066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.10174 -39.75985 -38.59536 -37.11759 -34.59556 -33.48414 -30.91510 -30.62070 -29.90022 -28.16683 -28.13025 -27.76402 -27.26527 -25.41454 -24.03215 -22.30797 -21.02276 -20.65702 -19.56140 -19.48517 -18.03898 -17.55594 -16.89200 -16.71845 -16.66683 -16.15718 -16.13295 -15.66576 -15.42005 -15.26322 -14.80326 -14.65199 -14.51723 -14.30856 -14.20617 -14.09082 -13.78460 -13.41376 -13.39224 -13.19464 -13.15733 -12.94079 -12.89244 -12.76825 -12.63879 -12.61842 -12.51152 -12.34264 -12.01395 -11.99700 -11.81219 -11.72446 -11.56490 -11.42334 -11.28675 -11.15325 -11.14531 -10.96331 -10.29400 -9.67147 -9.16224 -8.69512 -8.35131 -6.14359 1.23862 1.42524 1.44896 1.56154 1.56618 2.12406 2.26827 2.92688 2.98759 3.25226 3.58285 3.64480 3.77469 3.89362 3.92161 3.93839 4.04694 4.19472 4.24089 4.32790 4.36708 4.39541 4.43201 4.52140 4.55575 4.64631 4.66153 4.70665 4.75161 4.77514 4.80471 4.81805 4.86035 4.91982 4.93545 4.99768 5.05563 5.07275 5.08713 5.12754 5.15583 5.18847 5.24582 5.31729 5.40694 5.42466 5.44106 5.51591 5.56676 6.19095 6.19380 6.20881 6.42314 7.05505 7.12436 8.74299 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002040 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.604891 B =13719.294157 C =14495.044982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.563 5.563 3 C 0.055 3.945 4 C -0.100 4.100 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.138 4.138 9 C 0.073 3.927 10 C -0.084 4.084 11 H 0.081 0.919 12 C -0.111 4.111 13 C 0.089 3.911 14 N -0.620 5.620 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.118 4.118 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.257 1.257 27 C 0.123 3.877 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.271 0.729 53 H 0.050 0.950 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.413 20.790 15.925 33.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.072 4.072 4 C -0.138 4.138 5 C -0.069 4.069 6 C -0.201 4.201 7 C -0.198 4.198 8 C -0.196 4.196 9 C -0.055 4.055 10 C -0.104 4.104 11 H 0.099 0.901 12 C -0.149 4.149 13 C -0.033 4.033 14 N -0.354 5.354 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.269 4.269 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.181 1.181 27 C 0.001 3.999 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.127 0.873 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.124 0.876 51 H 0.123 0.877 52 H 0.080 0.920 53 H 0.069 0.931 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.690 20.372 13.592 32.060 hybrid contribution 1.133 -0.214 1.542 1.926 sum -19.556 20.158 15.134 31.904 Atomic orbital electron populations 1.22392 0.86542 1.02176 1.01062 1.61903 1.08607 1.14354 1.43817 1.22289 1.00192 0.87456 0.97258 1.21574 1.00727 0.94283 0.97250 1.20532 0.95398 0.94776 0.96183 1.21934 0.94991 1.01699 1.01519 1.21858 1.01472 1.00298 0.96183 1.21891 1.00592 0.99762 0.97320 1.22020 0.93135 0.98584 0.91793 1.22266 0.96993 0.97133 0.93982 0.90101 1.22679 0.96428 0.99088 0.96753 1.22369 1.00333 1.01779 0.78846 1.48542 1.21854 1.55211 1.09831 1.19810 0.84825 0.77755 0.84541 1.90683 1.73941 1.60229 1.20076 1.23288 0.96554 1.03442 1.03583 1.85616 1.23350 1.71035 1.12641 1.23181 1.06351 1.41963 0.97782 0.89879 1.26175 1.02262 0.95495 0.95358 1.70195 1.37001 1.40370 1.07233 0.84918 0.76001 0.78724 0.78104 1.19211 1.20241 1.18091 1.22138 0.83811 0.94503 0.99487 0.94834 0.91388 0.91300 0.93623 0.91064 0.93247 0.91633 0.93889 0.92308 0.92300 0.92296 0.92219 0.93514 0.92273 0.92451 0.92444 0.89886 0.92326 0.88730 0.87293 0.90358 0.90651 0.87586 0.87679 0.91962 0.93103 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.27 127.69 1.18 1.50 16 2 N -0.56 -8.52 4.62 -922.44 -4.26 -12.79 16 3 C 0.06 0.77 4.10 86.30 0.35 1.12 16 4 C -0.10 -1.49 4.19 30.59 0.13 -1.36 16 5 C -0.07 -0.89 0.80 -52.18 -0.04 -0.93 16 6 C -0.14 -2.11 8.12 71.98 0.58 -1.52 16 7 C -0.14 -1.83 8.47 71.98 0.61 -1.22 16 8 C -0.14 -1.43 8.12 71.98 0.58 -0.85 16 9 C 0.07 0.91 4.43 86.30 0.38 1.29 16 10 C -0.08 -1.34 3.03 -9.48 -0.03 -1.37 16 11 H 0.08 1.39 6.52 -2.39 -0.02 1.37 16 12 C -0.11 -1.33 6.42 31.78 0.20 -1.12 16 13 C 0.09 1.74 6.49 86.73 0.56 2.30 16 14 N -0.62 -18.55 3.33 -812.24 -2.70 -21.26 16 15 C 0.54 22.47 7.87 87.66 0.69 23.16 16 16 O -0.57 -29.20 16.12 -3.04 -0.05 -29.25 16 17 C -0.12 -5.02 5.35 71.24 0.38 -4.64 16 18 S -0.15 -8.89 20.57 -56.49 -1.16 -10.05 16 19 C -0.55 -31.80 9.50 67.95 0.65 -31.16 16 20 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 21 C 0.01 0.68 5.49 84.86 0.47 1.14 16 22 N -0.91 -56.99 13.22 21.65 0.29 -56.70 16 23 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 27 C 0.12 3.16 6.28 86.78 0.55 3.70 16 28 H 0.03 0.34 8.13 -2.39 -0.02 0.32 16 29 H 0.07 0.85 6.57 -2.39 -0.02 0.84 16 30 H 0.07 0.81 7.95 -2.39 -0.02 0.79 16 31 H 0.05 0.54 6.40 -2.39 -0.02 0.52 16 32 H 0.07 1.10 4.65 -2.39 -0.01 1.09 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.90 6.60 -2.39 -0.02 0.89 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.58 6.43 -2.38 -0.02 0.56 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.98 7.74 -2.39 -0.02 0.96 16 45 H 0.06 0.55 8.05 -2.39 -0.02 0.53 16 46 H 0.09 0.87 8.04 -2.38 -0.02 0.86 16 47 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 51 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 52 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 53 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 54 H 0.06 1.63 7.94 -2.39 -0.02 1.61 16 Total: -1.00 -78.29 428.11 2.22 -76.07 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.84 Total: 17.79 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 7.25 Total: -9.94 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -6.68 Total: -90.74 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.25 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -78.29 2.22 -76.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732065639.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.303 kcal (2) G-P(sol) polarization free energy of solvation -78.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds