Wall clock time and date at job start Wed Apr 1 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 C 1.53000 * 109.47026 * 120.00361 * 2 1 3 5 5 H 1.08996 * 109.47625 * 59.99783 * 4 2 1 6 6 C 1.53003 * 109.47003 * 299.99489 * 4 2 1 7 7 N 1.46496 * 109.47653 * 184.99987 * 6 4 2 8 8 C 1.34770 * 120.00291 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00412 * 359.97438 * 8 7 6 10 10 C 1.50713 * 119.99798 * 180.02562 * 8 7 6 11 11 S 1.80995 * 109.46721 * 180.02562 * 10 8 7 12 12 C 1.76206 * 99.99825 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99730 * 359.97438 * 12 11 10 14 14 C 1.38794 * 120.00002 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00008 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47266 * 90.00056 * 16 14 12 18 18 H 1.48506 * 109.46916 * 210.00206 * 16 14 12 19 19 H 1.48502 * 109.46891 * 329.99966 * 16 14 12 20 20 N 1.46899 * 109.47109 * 180.02562 * 4 2 1 21 21 C 1.46903 * 110.99609 * 274.99597 * 20 4 2 22 22 C 1.53008 * 109.46903 * 180.02562 * 21 20 4 23 23 C 1.53780 * 113.60995 * 185.00395 * 22 21 20 24 24 C 1.53781 * 87.07624 * 219.93050 * 23 22 21 25 25 C 1.53006 * 113.61570 * 139.98161 * 24 23 22 26 26 C 1.52999 * 113.61565 * 270.79721 * 24 23 22 27 27 C 1.53780 * 87.17569 * 25.38944 * 24 23 22 28 28 H 1.08998 * 109.47302 * 300.00278 * 1 2 3 29 29 H 1.09005 * 109.47170 * 59.99995 * 1 2 3 30 30 H 1.09001 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47302 * 239.99722 * 2 1 3 32 32 H 1.09001 * 109.47147 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47450 * 299.99637 * 3 2 1 34 34 H 1.09001 * 109.47136 * 60.00643 * 3 2 1 35 35 H 1.09002 * 109.47363 * 305.00499 * 6 4 2 36 36 H 1.09002 * 109.46853 * 65.00187 * 6 4 2 37 37 H 0.97008 * 119.99708 * 0.02562 * 7 6 4 38 38 H 1.08994 * 109.47013 * 300.00012 * 10 8 7 39 39 H 1.09003 * 109.46856 * 59.99713 * 10 8 7 40 40 H 0.97002 * 119.99458 * 179.97438 * 15 14 12 41 41 H 1.00900 * 110.99953 * 151.04299 * 20 4 2 42 42 H 1.08995 * 109.47099 * 60.00033 * 21 20 4 43 43 H 1.09000 * 109.47470 * 299.99770 * 21 20 4 44 44 H 1.09005 * 112.84571 * 316.19188 * 22 21 20 45 45 H 1.08994 * 113.61871 * 105.38959 * 23 22 21 46 46 H 1.08997 * 113.61428 * 334.47447 * 23 22 21 47 47 H 1.08995 * 109.47299 * 181.53222 * 25 24 23 48 48 H 1.09004 * 109.46791 * 301.52714 * 25 24 23 49 49 H 1.08991 * 109.46960 * 61.52568 * 25 24 23 50 50 H 1.08993 * 109.47603 * 298.47183 * 26 24 23 51 51 H 1.09000 * 109.46814 * 58.47622 * 26 24 23 52 52 H 1.09002 * 109.47143 * 178.47071 * 26 24 23 53 53 H 1.09000 * 113.61461 * 89.15487 * 27 24 23 54 54 H 1.08995 * 113.61894 * 220.06224 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2492 6 6 1.5300 0.0000 2.4985 7 7 2.1140 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0441 0.7929 5.0285 10 6 2.4065 -0.7795 6.1426 11 16 1.8019 0.0728 7.6204 12 6 2.6396 -0.8471 8.8682 13 1 3.2916 -1.6625 8.5919 14 6 2.4615 -0.5236 10.2062 15 7 1.6664 0.4699 10.5429 16 14 3.3490 -1.4993 11.5291 17 1 4.6648 -0.8705 11.8090 18 1 2.5315 -1.5096 12.7688 19 1 3.5561 -2.8933 11.0610 20 7 3.5089 -0.7208 1.2495 21 6 4.0359 -1.8440 0.4628 22 6 5.5654 -1.8104 0.4871 23 6 6.2191 -2.8755 -0.4090 24 6 7.2537 -3.0704 0.7120 25 6 7.6376 -4.5331 0.9444 26 6 8.4693 -2.1492 0.5910 27 6 6.1828 -2.5523 1.6865 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.8184 1.0502 2.4548 36 1 0.4437 -0.0769 2.5444 37 1 2.7231 -1.3672 3.6010 38 1 2.1189 -1.8299 6.1861 39 1 3.4928 -0.7019 6.0966 40 1 1.5417 0.6956 11.4780 41 1 3.8703 -0.7380 2.1914 42 1 3.6866 -1.7621 -0.5664 43 1 3.6866 -2.7833 0.8915 44 1 5.9691 -0.8086 0.3401 45 1 6.6427 -2.4723 -1.3287 46 1 5.5898 -3.7491 -0.5789 47 1 8.3500 -4.5956 1.7669 48 1 6.7452 -5.1079 1.1922 49 1 8.0908 -4.9379 0.0396 50 1 8.9913 -2.3572 -0.3430 51 1 8.1401 -1.1102 0.5997 52 1 9.1426 -2.3240 1.4302 53 1 5.5435 -3.3373 2.0903 54 1 6.5769 -1.8884 2.4558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732553796.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:52 Heat of formation + Delta-G solvation = -63.073971 kcal Electronic energy + Delta-G solvation = -28047.040046 eV Core-core repulsion = 24336.784087 eV Total energy + Delta-G solvation = -3710.255959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.03959 -40.57655 -39.00326 -35.27232 -34.88783 -34.58512 -31.87873 -31.12280 -28.59304 -28.27360 -27.95941 -27.63635 -26.61602 -25.77437 -24.24472 -21.88054 -21.44675 -20.26007 -19.66151 -19.09524 -17.92761 -17.67885 -16.94066 -16.88329 -16.64303 -16.18611 -16.10845 -15.61772 -15.27945 -15.16483 -15.03569 -14.66389 -14.60728 -14.34445 -14.27447 -14.10381 -13.65154 -13.54232 -13.44993 -13.22877 -13.16945 -12.89821 -12.76813 -12.75053 -12.67277 -12.61750 -12.60060 -12.27734 -11.86972 -11.76689 -11.73934 -11.61367 -11.35320 -11.24717 -11.14560 -10.97098 -10.87870 -10.74011 -10.28159 -10.14266 -9.35054 -8.67030 -8.34947 -6.13034 1.26087 1.42321 1.46464 1.56862 1.58713 2.22381 2.27734 2.99295 3.06311 3.31266 3.61834 3.63972 3.76092 3.81356 3.91360 3.93898 4.04865 4.12610 4.27152 4.33444 4.38992 4.39700 4.48702 4.53074 4.54509 4.65930 4.69428 4.76779 4.78939 4.85870 4.89396 4.90872 4.93032 4.98226 5.02978 5.06138 5.06356 5.11712 5.18761 5.20688 5.24993 5.31382 5.35632 5.37594 5.41563 5.52063 5.58127 5.60286 5.70468 6.09956 6.19534 6.38343 6.41391 7.06420 7.19079 8.74293 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.002679 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.083219 B =10448.648123 C =13419.409743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.073 4.073 3 C -0.139 4.139 4 C 0.093 3.907 5 H 0.059 0.941 6 C 0.116 3.884 7 N -0.714 5.714 8 C 0.536 3.464 9 O -0.562 6.562 10 C -0.130 4.130 11 S -0.150 6.150 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.998 3.002 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.258 1.258 20 N -0.685 5.685 21 C 0.073 3.927 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.340 0.660 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.054 0.946 52 H 0.054 0.946 53 H 0.080 0.920 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -9.832 -27.895 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.017 4.017 5 H 0.077 0.923 6 C -0.008 4.008 7 N -0.369 5.369 8 C 0.321 3.679 9 O -0.440 6.440 10 C -0.281 4.281 11 S 0.077 5.923 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.820 3.180 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.182 1.182 20 N -0.318 5.318 21 C -0.056 4.056 22 C -0.119 4.119 23 C -0.157 4.157 24 C -0.091 4.091 25 C -0.193 4.193 26 C -0.186 4.186 27 C -0.173 4.173 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.073 0.927 53 H 0.099 0.901 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.291 -7.733 -28.116 30.316 hybrid contribution 1.149 -2.193 1.570 2.932 sum 9.440 -9.926 -26.546 29.872 Atomic orbital electron populations 1.21944 0.94968 1.02145 1.02121 1.20976 0.95031 0.96660 0.96582 1.21753 1.01878 0.95311 1.00714 1.21711 0.88252 0.98211 0.93528 0.92294 1.21736 0.98187 0.97987 0.82876 1.45767 1.49656 1.36784 1.04694 1.20041 0.80458 0.82655 0.84710 1.90697 1.36941 1.29563 1.86830 1.23373 1.04829 1.04204 0.95703 1.85593 1.63211 1.46810 0.96641 1.23200 1.32576 1.20308 0.93288 0.89911 1.26129 0.95982 0.96397 1.00652 1.70187 1.36741 1.29042 1.18831 0.84956 0.77913 0.78631 0.76498 1.19292 1.20330 1.18154 1.60482 1.06045 1.46237 1.19085 1.22015 0.94051 0.90903 0.98599 1.22471 0.93779 0.98772 0.96927 1.23019 0.97213 0.98666 0.96799 1.21767 0.94422 0.95735 0.97139 1.21728 1.01360 0.94665 1.01533 1.21591 0.96449 0.98657 1.01897 1.23246 0.97950 0.99691 0.96436 0.93413 0.91577 0.92123 0.89975 0.91852 0.92689 0.94169 0.91575 0.91521 0.75402 0.87324 0.87171 0.91994 0.84013 0.90508 0.94712 0.89299 0.91235 0.89682 0.92992 0.92548 0.92208 0.91927 0.92648 0.92681 0.90115 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.84 71.98 0.64 -1.59 16 2 C -0.07 -1.06 2.83 -10.80 -0.03 -1.09 16 3 C -0.14 -2.34 8.69 71.98 0.63 -1.72 16 4 C 0.09 1.47 2.03 44.92 0.09 1.56 16 5 H 0.06 0.86 7.80 -2.39 -0.02 0.84 16 6 C 0.12 2.63 4.59 86.38 0.40 3.03 16 7 N -0.71 -17.84 4.99 -463.06 -2.31 -20.15 16 8 C 0.54 19.69 7.85 87.66 0.69 20.38 16 9 O -0.56 -26.18 15.86 -3.02 -0.05 -26.23 16 10 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 11 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 12 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 13 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 14 C 0.01 0.75 5.49 84.86 0.47 1.21 16 15 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 16 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 N -0.69 -10.18 5.53 -491.56 -2.72 -12.90 16 21 C 0.07 0.88 5.33 86.31 0.46 1.34 16 22 C -0.10 -1.22 3.55 -10.21 -0.04 -1.26 16 23 C -0.12 -1.27 6.80 31.12 0.21 -1.06 16 24 C -0.09 -1.08 1.39 -51.65 -0.07 -1.15 16 25 C -0.14 -1.55 9.18 71.98 0.66 -0.89 16 26 C -0.13 -1.55 9.07 71.98 0.65 -0.90 16 27 C -0.14 -1.78 6.77 31.18 0.21 -1.57 16 28 H 0.05 0.83 6.54 -2.39 -0.02 0.81 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.05 7.45 -2.39 -0.02 1.04 16 32 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.04 0.80 6.32 -2.39 -0.02 0.79 16 35 H 0.07 1.75 6.17 -2.39 -0.01 1.73 16 36 H 0.07 1.66 6.71 -2.39 -0.02 1.64 16 37 H 0.41 7.60 7.37 -92.70 -0.68 6.91 16 38 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.34 5.49 6.71 -89.69 -0.60 4.89 16 42 H 0.08 0.89 7.44 -2.39 -0.02 0.87 16 43 H 0.03 0.40 7.77 -2.39 -0.02 0.38 16 44 H 0.09 1.28 7.64 -2.38 -0.02 1.26 16 45 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 46 H 0.08 0.83 8.06 -2.39 -0.02 0.81 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.63 7.98 -2.38 -0.02 0.61 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.05 0.70 7.34 -2.39 -0.02 0.68 16 52 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.08 1.04 7.75 -2.39 -0.02 1.02 16 54 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -72.42 431.35 1.70 -70.72 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.42 Total: 27.21 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 6.04 Total: -18.87 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -4.74 Total: -88.90 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -72.42 1.70 -70.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732553796.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.647 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds