Wall clock time and date at job start Wed Apr 1 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47490 * 2 1 4 4 N 1.46503 * 109.46712 * 120.00670 * 2 1 3 5 5 C 1.34780 * 120.00223 * 84.99807 * 4 2 1 6 6 O 1.21284 * 119.99837 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99806 * 179.97438 * 5 4 2 8 8 N 1.46901 * 109.46930 * 180.02562 * 7 5 4 9 9 C 1.46899 * 111.00128 * 66.04864 * 8 7 5 10 10 C 1.46904 * 110.99939 * 190.00404 * 8 7 5 11 11 C 1.50700 * 109.47070 * 169.99899 * 10 8 7 12 12 O 1.21280 * 120.00210 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00044 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99862 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46928 * 179.97438 * 14 13 11 16 16 O 1.42899 * 113.41348 * 313.20372 * 15 14 13 17 17 C 1.53496 * 114.20479 * 180.02562 * 15 14 13 18 18 N 1.47066 * 87.98324 * 220.34620 * 17 15 14 19 19 C 1.36944 * 136.05683 * 207.08528 * 18 17 15 20 20 H 1.08004 * 119.99874 * 6.90177 * 19 18 17 21 21 C 1.38808 * 119.99887 * 186.89762 * 19 18 17 22 22 N 1.31620 * 119.99758 * 172.36849 * 21 19 18 23 23 Si 1.86803 * 120.00116 * 352.64805 * 21 19 18 24 24 H 1.48502 * 109.46980 * 175.03997 * 23 21 19 25 25 H 1.48501 * 109.46832 * 295.03703 * 23 21 19 26 26 H 1.48495 * 109.47214 * 55.03946 * 23 21 19 27 27 C 1.47058 * 87.88471 * 27.34220 * 18 17 15 28 28 H 1.09003 * 109.46737 * 299.99680 * 1 2 3 29 29 H 1.08999 * 109.47039 * 59.99807 * 1 2 3 30 30 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46794 * 239.99781 * 2 1 3 32 32 H 1.09003 * 109.47139 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47379 * 300.00626 * 3 2 1 34 34 H 1.09003 * 109.46869 * 60.00401 * 3 2 1 35 35 H 0.97002 * 119.99561 * 264.99106 * 4 2 1 36 36 H 1.09004 * 109.47186 * 60.00294 * 7 5 4 37 37 H 1.08999 * 109.47547 * 300.00072 * 7 5 4 38 38 H 1.09001 * 109.46725 * 183.95656 * 9 8 7 39 39 H 1.08998 * 109.47146 * 303.95099 * 9 8 7 40 40 H 1.08995 * 109.47008 * 63.95619 * 9 8 7 41 41 H 1.09004 * 109.47161 * 50.00100 * 10 8 7 42 42 H 1.08998 * 109.46971 * 290.00016 * 10 8 7 43 43 H 0.96997 * 119.99638 * 359.97438 * 13 11 10 44 44 H 1.09001 * 109.47149 * 60.00719 * 14 13 11 45 45 H 1.08998 * 109.47686 * 300.00064 * 14 13 11 46 46 H 0.96703 * 113.99848 * 46.79570 * 16 15 14 47 47 H 1.09007 * 113.46615 * 105.56627 * 17 15 14 48 48 H 1.08998 * 113.52551 * 335.13818 * 17 15 14 49 49 H 0.96999 * 119.99710 * 5.38439 * 22 21 19 50 50 H 1.09001 * 113.46851 * 87.44175 * 27 18 17 51 51 H 1.09001 * 113.47037 * 217.87480 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1469 -2.0324 1.1943 6 8 1.8580 -2.6679 0.2025 7 6 2.6497 -2.7428 2.4245 8 7 2.6995 -4.1886 2.1690 9 6 3.7041 -4.5081 1.1459 10 6 2.9554 -4.9338 3.4089 11 6 2.7573 -6.4067 3.1597 12 8 2.4343 -6.7973 2.0579 13 7 2.9381 -7.2900 4.1615 14 6 2.7450 -8.7219 3.9193 15 6 3.0116 -9.4980 5.2107 16 8 4.2127 -9.1000 5.8748 17 6 2.8399 -11.0176 5.0785 18 7 2.1987 -11.0080 6.4020 19 6 2.0467 -11.8994 7.4305 20 1 2.5587 -12.8499 7.4014 21 6 1.2345 -11.5812 8.5102 22 7 0.9677 -12.4908 9.4235 23 14 0.5139 -9.8646 8.6632 24 1 -0.4061 -9.8159 9.8279 25 1 1.6110 -8.8828 8.8576 26 1 -0.2360 -9.5305 7.4258 27 6 1.7872 -9.6222 6.1323 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.2490 -0.1825 1.9894 36 1 1.9774 -2.5439 3.2592 37 1 3.6490 -2.3828 2.6691 38 1 3.6714 -5.5751 0.9255 39 1 3.4910 -3.9430 0.2386 40 1 4.6950 -4.2434 1.5146 41 1 2.2640 -4.6000 4.1827 42 1 3.9798 -4.7550 3.7354 43 1 3.1960 -6.9776 5.0428 44 1 3.4364 -9.0560 3.1458 45 1 1.7205 -8.9003 3.5927 46 1 4.3182 -8.1422 5.9562 47 1 3.7846 -11.5610 5.0577 48 1 2.1673 -11.3110 4.2725 49 1 1.3999 -13.3583 9.3847 50 1 0.8368 -9.5466 5.6040 51 1 1.8349 -8.9767 7.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754770092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:39 Heat of formation + Delta-G solvation = -71.468188 kcal Electronic energy + Delta-G solvation = -30059.605272 eV Core-core repulsion = 25802.692099 eV Total energy + Delta-G solvation = -4256.913174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42580 -40.95590 -40.25188 -37.74189 -36.78172 -36.51790 -35.22299 -34.42838 -32.71306 -31.06642 -29.61670 -28.80239 -28.08255 -27.25524 -27.16097 -24.48348 -23.15409 -22.09580 -21.54302 -21.35251 -21.16942 -19.72594 -18.86595 -18.00806 -17.82682 -17.29224 -17.09326 -16.81338 -16.61903 -16.34316 -15.92199 -15.74407 -15.58087 -15.36062 -15.18580 -15.07882 -15.00259 -14.58733 -14.45724 -14.05402 -13.87855 -13.69656 -13.57521 -13.32368 -13.13644 -13.06259 -12.85795 -12.80654 -12.61817 -12.48154 -12.37311 -12.22545 -11.89055 -11.88050 -11.76064 -11.32078 -11.02848 -10.99672 -10.60941 -10.59689 -10.10965 -10.03757 -9.24003 -9.21423 -8.67538 -5.48048 1.35996 1.49152 1.68489 1.69871 1.72695 1.86985 2.29037 2.55220 2.88357 2.96891 3.07829 3.18586 3.32210 3.78883 3.79619 3.83407 4.02234 4.15252 4.24662 4.27783 4.34251 4.34889 4.42211 4.46354 4.50059 4.57728 4.62082 4.64840 4.66381 4.74759 4.76268 4.77939 4.80652 4.94815 5.03264 5.04732 5.15412 5.19749 5.28127 5.33530 5.38646 5.63073 5.90472 5.92740 5.94932 6.54286 6.67815 6.68578 6.79222 7.30158 7.31702 7.40160 8.23494 8.88251 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.001859 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.536992 B =15059.001247 C =15754.353127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.151 4.151 4 N -0.716 5.716 5 C 0.506 3.494 6 O -0.571 6.571 7 C 0.039 3.961 8 N -0.538 5.538 9 C 0.025 3.975 10 C 0.041 3.959 11 C 0.511 3.489 12 O -0.565 6.565 13 N -0.719 5.719 14 C 0.123 3.877 15 C 0.109 3.891 16 O -0.535 6.535 17 C 0.126 3.874 18 N -0.654 5.654 19 C -0.291 4.291 20 H 0.045 0.955 21 C -0.089 4.089 22 N -0.970 5.970 23 Si 1.114 2.886 24 H -0.306 1.306 25 H -0.266 1.266 26 H -0.258 1.258 27 C 0.070 3.930 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.413 0.587 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.387 0.613 47 H 0.048 0.952 48 H 0.077 0.923 49 H 0.244 0.756 50 H 0.066 0.934 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 35.415 -15.708 39.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.208 4.208 4 N -0.371 5.371 5 C 0.292 3.708 6 O -0.449 6.449 7 C -0.091 4.091 8 N -0.263 5.263 9 C -0.123 4.123 10 C -0.089 4.089 11 C 0.298 3.702 12 O -0.443 6.443 13 N -0.375 5.375 14 C -0.003 4.003 15 C 0.066 3.934 16 O -0.343 6.343 17 C 0.000 4.000 18 N -0.382 5.382 19 C -0.418 4.418 20 H 0.063 0.937 21 C -0.280 4.280 22 N -0.616 5.616 23 Si 0.939 3.061 24 H -0.234 1.234 25 H -0.192 1.192 26 H -0.183 1.183 27 C -0.055 4.055 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.156 0.844 42 H 0.119 0.881 43 H 0.250 0.750 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.238 0.762 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.053 0.947 50 H 0.084 0.916 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.516 34.645 -16.279 38.545 hybrid contribution 1.778 -1.151 0.140 2.123 sum 6.294 33.494 -16.139 37.709 Atomic orbital electron populations 1.22147 0.95431 1.01052 1.03204 1.20931 0.94092 0.94052 0.88035 1.22008 1.01778 0.92983 1.04077 1.46013 1.67323 1.06243 1.17481 1.21082 0.77124 0.82679 0.89865 1.90712 1.50628 1.66705 1.36836 1.22104 1.03863 0.86959 0.96150 1.61111 1.50954 1.05712 1.08550 1.22477 0.91615 1.02484 0.95715 1.22099 1.04803 0.88767 0.93207 1.21131 0.75902 0.89439 0.83731 1.90715 1.47286 1.80946 1.25347 1.45774 1.71387 1.06034 1.14296 1.21565 1.02711 0.80244 0.95763 1.22670 0.85190 0.95325 0.90262 1.86648 1.38922 1.28772 1.79909 1.22639 0.96797 0.92538 0.87989 1.45773 1.65499 1.12404 1.14508 1.19969 1.26713 0.97033 0.98127 0.93661 1.27240 0.98454 1.08695 0.93631 1.71034 1.44410 1.06169 1.39962 0.83227 0.75988 0.70886 0.76018 1.23411 1.19237 1.18274 1.23752 0.97336 0.86495 0.97938 0.91065 0.90788 0.95089 0.92255 0.91690 0.90356 0.90428 0.74652 0.84709 0.88534 0.92168 0.91840 0.94406 0.84412 0.88142 0.74977 0.90355 0.90388 0.76237 0.93357 0.90532 0.94681 0.91603 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 71.98 0.68 -1.13 16 2 C 0.13 1.39 3.18 44.99 0.14 1.53 16 3 C -0.15 -0.58 9.38 71.98 0.68 0.09 16 4 N -0.72 -6.39 5.08 -442.53 -2.25 -8.63 16 5 C 0.51 8.13 7.49 87.66 0.66 8.78 16 6 O -0.57 -15.73 14.00 -3.04 -0.04 -15.78 16 7 C 0.04 0.38 5.45 85.56 0.47 0.84 16 8 N -0.54 -9.56 4.24 -931.65 -3.95 -13.51 16 9 C 0.02 0.53 8.85 127.69 1.13 1.66 16 10 C 0.04 0.49 5.45 85.56 0.47 0.95 16 11 C 0.51 10.58 7.55 87.66 0.66 11.25 16 12 O -0.57 -17.77 14.31 -3.03 -0.04 -17.81 16 13 N -0.72 -12.70 5.34 -463.06 -2.47 -15.17 16 14 C 0.12 2.95 5.43 86.38 0.47 3.42 16 15 C 0.11 3.29 1.74 -10.37 -0.02 3.28 16 16 O -0.54 -15.69 13.56 -148.98 -2.02 -17.72 16 17 C 0.13 4.84 8.10 83.17 0.67 5.51 16 18 N -0.65 -31.91 3.69 -738.49 -2.73 -34.64 16 19 C -0.29 -17.45 11.08 84.03 0.93 -16.52 16 20 H 0.05 2.96 8.05 -2.91 -0.02 2.94 16 21 C -0.09 -5.43 5.50 84.86 0.47 -4.97 16 22 N -0.97 -63.87 13.70 21.65 0.30 -63.58 16 23 Si 1.11 52.77 25.13 68.60 1.72 54.50 16 24 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 25 H -0.27 -11.24 6.64 99.48 0.66 -10.57 16 26 H -0.26 -10.83 6.13 99.48 0.61 -10.22 16 27 C 0.07 2.64 5.14 83.26 0.43 3.07 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.96 7.58 -2.39 -0.02 0.94 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.42 0.60 8.60 -92.71 -0.80 -0.20 16 36 H 0.14 0.50 7.93 -2.39 -0.02 0.48 16 37 H 0.10 0.34 8.12 -2.39 -0.02 0.32 16 38 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 39 H 0.06 1.61 5.83 -2.39 -0.01 1.60 16 40 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.14 0.80 7.93 -2.39 -0.02 0.78 16 42 H 0.10 0.55 8.12 -2.39 -0.02 0.53 16 43 H 0.41 4.50 6.95 -92.71 -0.64 3.85 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.03 7.89 -2.39 -0.02 2.01 16 46 H 0.39 6.76 7.21 -74.06 -0.53 6.23 16 47 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 49 H 0.24 16.22 8.73 -92.71 -0.81 15.42 16 50 H 0.07 2.38 7.50 -2.39 -0.02 2.37 16 51 H 0.06 2.15 4.67 -2.39 -0.01 2.13 16 Total: -1.00 -94.49 405.12 -4.85 -99.34 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -1.20 Total: 15.22 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.83 Total: 17.78 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -11.10 Total: -135.53 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.11 Total: -51.30 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 1.72 Total: 54.50 kcal Total: -94.49 -4.85 -99.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -94.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds