Wall clock time and date at job start Wed Apr 1 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46729 * 2 1 4 4 N 1.46499 * 109.46596 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99767 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99354 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00070 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.52990 * 109.47049 * 60.00167 * 8 7 5 10 10 C 1.52999 * 109.46941 * 299.99937 * 8 7 5 11 11 C 1.50700 * 109.47226 * 180.02562 * 8 7 5 12 12 O 1.21280 * 120.00210 * 144.99349 * 11 8 7 13 13 N 1.34781 * 120.00044 * 325.00045 * 11 8 7 14 14 C 1.46494 * 119.99862 * 179.97438 * 13 11 8 15 15 C 1.53007 * 109.46928 * 179.97438 * 14 13 11 16 16 O 1.42899 * 113.41348 * 313.20372 * 15 14 13 17 17 C 1.53496 * 114.20479 * 180.02562 * 15 14 13 18 18 N 1.47066 * 87.98324 * 220.34620 * 17 15 14 19 19 C 1.36944 * 136.05683 * 207.08528 * 18 17 15 20 20 H 1.08004 * 119.99874 * 6.90177 * 19 18 17 21 21 C 1.38808 * 119.99887 * 186.89762 * 19 18 17 22 22 N 1.31620 * 119.99758 * 172.36849 * 21 19 18 23 23 Si 1.86803 * 120.00116 * 352.64805 * 21 19 18 24 24 H 1.48502 * 109.46980 * 175.03997 * 23 21 19 25 25 H 1.48501 * 109.46832 * 295.03703 * 23 21 19 26 26 H 1.48495 * 109.47214 * 55.03946 * 23 21 19 27 27 C 1.47058 * 87.88471 * 27.34220 * 18 17 15 28 28 H 1.09001 * 109.47387 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47276 * 60.00163 * 1 2 3 30 30 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47282 * 239.99856 * 2 1 3 32 32 H 1.09002 * 109.46912 * 119.99528 * 2 1 3 33 33 H 1.08992 * 109.47356 * 59.99901 * 3 2 1 34 34 H 1.09005 * 109.46552 * 299.99606 * 3 2 1 35 35 H 0.96994 * 120.00845 * 359.97438 * 4 3 2 36 36 H 0.97005 * 119.99974 * 359.97438 * 7 5 4 37 37 H 1.09011 * 109.47363 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47430 * 299.99402 * 9 8 7 39 39 H 1.08999 * 109.47875 * 60.00380 * 9 8 7 40 40 H 1.09000 * 109.47685 * 299.99813 * 10 8 7 41 41 H 1.09002 * 109.46966 * 60.00040 * 10 8 7 42 42 H 1.09003 * 109.47422 * 180.02562 * 10 8 7 43 43 H 0.96997 * 119.99638 * 359.97438 * 13 11 8 44 44 H 1.09001 * 109.47149 * 60.00719 * 14 13 11 45 45 H 1.08998 * 109.47686 * 300.00064 * 14 13 11 46 46 H 0.96703 * 113.99848 * 46.79570 * 16 15 14 47 47 H 1.09007 * 113.46615 * 105.56627 * 17 15 14 48 48 H 1.08998 * 113.52551 * 335.13818 * 17 15 14 49 49 H 0.96999 * 119.99710 * 5.38439 * 22 21 19 50 50 H 1.09001 * 113.46851 * 87.44175 * 27 18 17 51 51 H 1.09001 * 113.47037 * 217.87480 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6099 -0.0012 6 8 3.5707 3.6628 -0.0018 7 7 5.5265 2.6099 -0.0013 8 6 6.2590 3.8787 -0.0014 9 6 5.8894 4.6810 1.2477 10 6 5.8893 4.6808 -1.2507 11 6 7.7406 3.6034 -0.0021 12 8 8.4937 4.3385 -0.6048 13 7 8.2288 2.5401 0.6670 14 6 9.6690 2.2722 0.6659 15 6 9.9550 1.0176 1.4936 16 8 9.2853 1.0052 2.7559 17 6 11.4401 0.6362 1.5657 18 7 11.0324 -0.7698 1.4248 19 6 11.5401 -1.9858 1.7976 20 1 12.4126 -2.0351 2.4322 21 6 10.9333 -3.1549 1.3597 22 7 11.5035 -4.3186 1.5906 23 14 9.3115 -3.0763 0.4361 24 1 8.9370 -4.4379 -0.0232 25 1 8.2544 -2.5493 1.3362 26 1 9.4539 -2.1793 -0.7387 27 6 9.8428 -0.2956 0.7019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9900 0.6026 -0.0006 36 1 6.0115 1.7698 -0.0005 37 1 6.4340 5.6253 1.2475 38 1 4.8178 4.8802 1.2478 39 1 6.1528 4.1096 2.1378 40 1 6.1526 4.1093 -2.1407 41 1 4.8176 4.8799 -1.2507 42 1 6.4345 5.6247 -1.2511 43 1 7.6265 1.9524 1.1493 44 1 10.1969 3.1214 1.0999 45 1 10.0091 2.1177 -0.3581 46 1 8.3501 1.2462 2.7073 47 1 11.8997 0.8605 2.5284 48 1 12.0254 1.0049 0.7234 49 1 12.3060 -4.3662 2.1333 50 1 10.0060 -0.1722 -0.3688 51 1 8.9414 -0.8651 0.9284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754779838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:08 Heat of formation + Delta-G solvation = -46.388741 kcal Electronic energy + Delta-G solvation = -31358.307527 eV Core-core repulsion = 27102.481879 eV Total energy + Delta-G solvation = -4255.825647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15564 -39.98213 -39.17241 -36.69271 -35.47982 -35.38575 -34.33569 -33.28973 -32.34636 -31.20159 -29.19659 -27.49315 -26.59730 -26.22685 -25.63964 -23.62008 -22.07618 -21.50994 -21.35016 -20.08846 -19.68562 -19.19601 -17.95049 -17.58504 -16.76865 -16.27351 -16.17704 -16.01153 -15.51824 -15.29007 -15.06102 -14.78950 -14.62625 -14.27268 -14.07989 -13.87592 -13.53023 -13.34917 -13.34284 -13.10290 -12.87731 -12.76550 -12.54320 -12.51095 -12.25774 -12.19256 -12.04310 -11.72421 -11.59168 -11.55470 -11.29048 -11.11483 -10.65116 -10.55825 -10.35728 -10.19469 -9.85735 -9.64666 -9.44258 -9.28624 -9.24714 -9.04674 -8.94241 -7.24057 -6.38546 -3.29130 2.02818 2.50294 2.72486 2.89557 3.25811 3.32500 3.54566 3.79274 4.10523 4.23165 4.41028 4.46946 4.50931 4.55509 4.63079 4.68421 4.75264 4.80894 4.92328 5.19347 5.21503 5.28967 5.37823 5.38915 5.43807 5.47822 5.53756 5.59214 5.66817 5.69887 5.70324 5.77058 5.88615 5.92902 5.99352 6.02291 6.07049 6.08658 6.16868 6.21169 6.25591 6.42454 6.48535 6.99158 7.06655 7.61518 7.70995 7.85167 8.17532 8.26173 8.90950 9.42294 10.25920 11.14349 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.003402 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.806673 B = 8228.838119 C =10726.329974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.138 3.862 4 N -0.747 5.747 5 C 0.711 3.289 6 O -0.582 6.582 7 N -0.744 5.744 8 C 0.182 3.818 9 C -0.161 4.161 10 C -0.151 4.151 11 C 0.519 3.481 12 O -0.521 6.521 13 N -0.726 5.726 14 C 0.103 3.897 15 C 0.069 3.931 16 O -0.517 6.517 17 C 0.139 3.861 18 N -0.617 5.617 19 C -0.301 4.301 20 H 0.084 0.916 21 C -0.026 4.026 22 N -0.934 5.934 23 Si 1.074 2.926 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.288 1.288 27 C 0.077 3.923 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.395 0.605 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.361 0.639 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 14.611 -3.537 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.014 3.986 4 N -0.403 5.403 5 C 0.411 3.589 6 O -0.459 6.459 7 N -0.403 5.403 8 C 0.092 3.908 9 C -0.219 4.219 10 C -0.209 4.209 11 C 0.303 3.697 12 O -0.395 6.395 13 N -0.380 5.380 14 C -0.021 4.021 15 C 0.026 3.974 16 O -0.320 6.320 17 C 0.012 3.988 18 N -0.344 5.344 19 C -0.427 4.427 20 H 0.102 0.898 21 C -0.225 4.225 22 N -0.576 5.576 23 Si 0.907 3.093 24 H -0.222 1.222 25 H -0.223 1.223 26 H -0.215 1.215 27 C -0.049 4.049 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.230 0.770 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.207 0.793 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.961 14.757 -4.472 25.223 hybrid contribution 0.934 -0.174 0.877 1.293 sum -19.027 14.583 -3.596 24.241 Atomic orbital electron populations 1.21668 0.94442 1.02279 1.02301 1.21763 0.97037 0.95815 1.03028 1.21268 0.77868 0.97049 1.02421 1.45204 1.07545 1.07219 1.80317 1.15808 0.81225 0.84372 0.77482 1.90876 1.67709 1.29945 1.57420 1.45327 1.05161 1.08707 1.81074 1.20408 0.86526 0.84588 0.99276 1.22224 1.05130 0.99862 0.94681 1.22087 1.04028 1.00135 0.94650 1.20480 0.89963 0.80713 0.78516 1.90748 1.59074 1.46986 1.42666 1.46069 1.09423 1.28979 1.53513 1.22033 0.80045 0.98312 1.01711 1.23345 0.97574 0.91908 0.84556 1.86709 1.25512 1.91868 1.27894 1.22338 0.90479 0.85797 1.00156 1.45693 1.22911 1.01338 1.64484 1.20128 1.12420 0.80568 1.29539 0.89794 1.25737 1.04332 0.91057 1.01374 1.70911 1.22601 1.24347 1.39762 0.83644 0.75403 0.74482 0.75741 1.22185 1.22349 1.21530 1.23501 0.93098 0.92396 0.95920 0.92325 0.92356 0.92089 0.91183 0.91104 0.91508 0.91571 0.76818 0.76905 0.90956 0.88723 0.92103 0.92367 0.89342 0.90610 0.77003 0.90166 0.89619 0.79309 0.92405 0.92579 0.92826 0.92825 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.14 -0.70 6.05 -26.73 -0.16 -0.86 16 3 C 0.14 0.94 5.67 -4.04 -0.02 0.92 16 4 N -0.75 -5.45 5.56 -65.22 -0.36 -5.81 16 5 C 0.71 6.96 7.98 -86.92 -0.69 6.26 16 6 O -0.58 -7.42 12.55 5.28 0.07 -7.36 16 7 N -0.74 -6.27 4.86 -53.51 -0.26 -6.53 16 8 C 0.18 1.81 0.98 -132.98 -0.13 1.68 16 9 C -0.16 -1.52 8.38 37.15 0.31 -1.21 16 10 C -0.15 -1.62 7.93 37.16 0.29 -1.32 16 11 C 0.52 5.98 6.65 -10.98 -0.07 5.91 16 12 O -0.52 -7.78 16.09 5.56 0.09 -7.69 16 13 N -0.73 -7.44 5.04 -60.29 -0.30 -7.74 16 14 C 0.10 1.29 5.43 -4.04 -0.02 1.27 16 15 C 0.07 1.09 1.74 -89.97 -0.16 0.93 16 16 O -0.52 -8.11 13.56 -35.23 -0.48 -8.59 16 17 C 0.14 2.63 8.10 -8.52 -0.07 2.57 16 18 N -0.62 -14.77 3.69 -184.62 -0.68 -15.45 16 19 C -0.30 -8.59 11.08 -15.06 -0.17 -8.76 16 20 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 21 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 22 N -0.93 -29.20 13.70 55.49 0.76 -28.44 16 23 Si 1.07 25.74 25.13 -169.99 -4.27 21.47 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.30 -6.55 6.64 56.52 0.38 -6.17 16 26 H -0.29 -6.32 6.13 56.52 0.35 -5.98 16 27 C 0.08 1.49 5.14 -8.39 -0.04 1.44 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.40 2.10 8.49 -40.82 -0.35 1.75 16 36 H 0.40 2.67 7.25 -40.82 -0.30 2.37 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.09 1.01 6.16 -51.93 -0.32 0.69 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.02 6.16 -51.93 -0.32 0.70 16 42 H 0.08 0.81 7.87 -51.93 -0.41 0.41 16 43 H 0.39 3.19 5.69 -40.82 -0.23 2.96 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 46 H 0.36 3.89 7.21 45.56 0.33 4.22 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 49 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 50 H 0.05 1.00 7.50 -51.93 -0.39 0.61 16 51 H 0.05 1.07 4.67 -51.93 -0.24 0.82 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -36.61 402.09 -7.83 -44.44 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.79 Total: 8.00 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.66 Total: 7.65 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.85 Total: -63.97 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.32 Total: -23.64 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.27 Total: 21.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.61 -7.83 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754779838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.953 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds