Wall clock time and date at job start Wed Apr 1 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46729 * 2 1 4 4 N 1.46499 * 109.46596 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99767 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99354 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00070 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.52990 * 109.47049 * 60.00167 * 8 7 5 10 10 C 1.52999 * 109.46941 * 299.99937 * 8 7 5 11 11 C 1.50700 * 109.47226 * 180.02562 * 8 7 5 12 12 O 1.21280 * 120.00210 * 144.99349 * 11 8 7 13 13 N 1.34781 * 120.00044 * 325.00045 * 11 8 7 14 14 C 1.46494 * 119.99862 * 179.97438 * 13 11 8 15 15 C 1.53007 * 109.46928 * 179.97438 * 14 13 11 16 16 O 1.42899 * 113.41348 * 313.20372 * 15 14 13 17 17 C 1.53496 * 114.20479 * 180.02562 * 15 14 13 18 18 N 1.47066 * 87.98324 * 220.34620 * 17 15 14 19 19 C 1.36944 * 136.05683 * 207.08528 * 18 17 15 20 20 H 1.08004 * 119.99874 * 6.90177 * 19 18 17 21 21 C 1.38808 * 119.99887 * 186.89762 * 19 18 17 22 22 N 1.31620 * 119.99758 * 172.36849 * 21 19 18 23 23 Si 1.86803 * 120.00116 * 352.64805 * 21 19 18 24 24 H 1.48502 * 109.46980 * 175.03997 * 23 21 19 25 25 H 1.48501 * 109.46832 * 295.03703 * 23 21 19 26 26 H 1.48495 * 109.47214 * 55.03946 * 23 21 19 27 27 C 1.47058 * 87.88471 * 27.34220 * 18 17 15 28 28 H 1.09001 * 109.47387 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47276 * 60.00163 * 1 2 3 30 30 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47282 * 239.99856 * 2 1 3 32 32 H 1.09002 * 109.46912 * 119.99528 * 2 1 3 33 33 H 1.08992 * 109.47356 * 59.99901 * 3 2 1 34 34 H 1.09005 * 109.46552 * 299.99606 * 3 2 1 35 35 H 0.96994 * 120.00845 * 359.97438 * 4 3 2 36 36 H 0.97005 * 119.99974 * 359.97438 * 7 5 4 37 37 H 1.09011 * 109.47363 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47430 * 299.99402 * 9 8 7 39 39 H 1.08999 * 109.47875 * 60.00380 * 9 8 7 40 40 H 1.09000 * 109.47685 * 299.99813 * 10 8 7 41 41 H 1.09002 * 109.46966 * 60.00040 * 10 8 7 42 42 H 1.09003 * 109.47422 * 180.02562 * 10 8 7 43 43 H 0.96997 * 119.99638 * 359.97438 * 13 11 8 44 44 H 1.09001 * 109.47149 * 60.00719 * 14 13 11 45 45 H 1.08998 * 109.47686 * 300.00064 * 14 13 11 46 46 H 0.96703 * 113.99848 * 46.79570 * 16 15 14 47 47 H 1.09007 * 113.46615 * 105.56627 * 17 15 14 48 48 H 1.08998 * 113.52551 * 335.13818 * 17 15 14 49 49 H 0.96999 * 119.99710 * 5.38439 * 22 21 19 50 50 H 1.09001 * 113.46851 * 87.44175 * 27 18 17 51 51 H 1.09001 * 113.47037 * 217.87480 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6099 -0.0012 6 8 3.5707 3.6628 -0.0018 7 7 5.5265 2.6099 -0.0013 8 6 6.2590 3.8787 -0.0014 9 6 5.8894 4.6810 1.2477 10 6 5.8893 4.6808 -1.2507 11 6 7.7406 3.6034 -0.0021 12 8 8.4937 4.3385 -0.6048 13 7 8.2288 2.5401 0.6670 14 6 9.6690 2.2722 0.6659 15 6 9.9550 1.0176 1.4936 16 8 9.2853 1.0052 2.7559 17 6 11.4401 0.6362 1.5657 18 7 11.0324 -0.7698 1.4248 19 6 11.5401 -1.9858 1.7976 20 1 12.4126 -2.0351 2.4322 21 6 10.9333 -3.1549 1.3597 22 7 11.5035 -4.3186 1.5906 23 14 9.3115 -3.0763 0.4361 24 1 8.9370 -4.4379 -0.0232 25 1 8.2544 -2.5493 1.3362 26 1 9.4539 -2.1793 -0.7387 27 6 9.8428 -0.2956 0.7019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9900 0.6026 -0.0006 36 1 6.0115 1.7698 -0.0005 37 1 6.4340 5.6253 1.2475 38 1 4.8178 4.8802 1.2478 39 1 6.1528 4.1096 2.1378 40 1 6.1526 4.1093 -2.1407 41 1 4.8176 4.8799 -1.2507 42 1 6.4345 5.6247 -1.2511 43 1 7.6265 1.9524 1.1493 44 1 10.1969 3.1214 1.0999 45 1 10.0091 2.1177 -0.3581 46 1 8.3501 1.2462 2.7073 47 1 11.8997 0.8605 2.5284 48 1 12.0254 1.0049 0.7234 49 1 12.3060 -4.3662 2.1333 50 1 10.0060 -0.1722 -0.3688 51 1 8.9414 -0.8651 0.9284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754779838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:07 Heat of formation + Delta-G solvation = -78.852047 kcal Electronic energy + Delta-G solvation = -31359.715241 eV Core-core repulsion = 27102.481879 eV Total energy + Delta-G solvation = -4257.233362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02400 -41.09322 -40.28811 -37.36172 -36.83560 -36.17136 -35.38688 -34.42313 -33.89058 -31.86588 -30.69174 -28.34277 -27.88856 -27.16266 -26.93299 -24.66845 -23.06729 -22.51834 -22.15996 -21.30990 -20.79397 -20.00226 -19.63551 -18.67582 -17.99830 -17.30365 -16.99836 -16.81411 -16.49372 -16.43786 -16.00896 -15.70521 -15.64333 -15.52098 -15.20919 -15.12333 -14.90137 -14.71397 -14.25047 -14.03917 -13.78632 -13.56872 -13.46970 -13.34986 -13.25126 -13.17753 -12.87622 -12.83717 -12.78322 -12.36622 -12.35306 -11.97008 -11.91500 -11.77575 -11.69942 -11.42902 -11.28339 -11.01370 -10.76940 -10.64591 -10.42051 -10.26918 -9.86816 -9.21305 -8.67078 -5.47720 1.21040 1.35053 1.50002 1.69604 1.73239 1.80368 2.14987 2.57072 2.87605 2.95048 3.16864 3.19160 3.25844 3.45162 3.73611 3.88268 3.94013 3.97710 4.14409 4.25040 4.40748 4.48279 4.58404 4.60249 4.65043 4.70908 4.73351 4.73912 4.76049 4.78329 4.81206 4.83804 4.89077 5.02219 5.08517 5.17434 5.20357 5.20999 5.26853 5.29880 5.34300 5.39228 5.59100 5.89272 5.93435 6.22448 6.68180 6.71707 6.95393 7.02596 7.31058 7.56318 8.23642 8.88833 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009066 B = 0.003402 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.806673 B = 8228.838119 C =10726.329974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.139 3.861 4 N -0.736 5.736 5 C 0.707 3.293 6 O -0.614 6.614 7 N -0.734 5.734 8 C 0.188 3.812 9 C -0.156 4.156 10 C -0.146 4.146 11 C 0.527 3.473 12 O -0.553 6.553 13 N -0.713 5.713 14 C 0.117 3.883 15 C 0.105 3.895 16 O -0.535 6.535 17 C 0.127 3.873 18 N -0.654 5.654 19 C -0.291 4.291 20 H 0.044 0.956 21 C -0.091 4.091 22 N -0.972 5.972 23 Si 1.114 2.886 24 H -0.308 1.308 25 H -0.264 1.264 26 H -0.253 1.253 27 C 0.069 3.931 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.408 0.592 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.384 0.616 47 H 0.047 0.953 48 H 0.081 0.919 49 H 0.244 0.756 50 H 0.072 0.928 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 15.904 -4.315 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.015 3.985 4 N -0.393 5.393 5 C 0.407 3.593 6 O -0.494 6.494 7 N -0.393 5.393 8 C 0.098 3.902 9 C -0.214 4.214 10 C -0.205 4.205 11 C 0.312 3.688 12 O -0.429 6.429 13 N -0.367 5.367 14 C -0.007 4.007 15 C 0.062 3.938 16 O -0.341 6.341 17 C 0.001 3.999 18 N -0.383 5.383 19 C -0.418 4.418 20 H 0.062 0.938 21 C -0.282 4.282 22 N -0.617 5.617 23 Si 0.939 3.061 24 H -0.236 1.236 25 H -0.190 1.190 26 H -0.178 1.178 27 C -0.056 4.056 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.246 0.754 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.234 0.766 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.086 16.077 -5.228 27.814 hybrid contribution 1.659 -0.492 1.198 2.104 sum -20.427 15.586 -4.030 26.008 Atomic orbital electron populations 1.21682 0.94221 1.02613 1.02286 1.21704 0.97146 0.94450 1.03505 1.21282 0.77568 0.98149 1.01525 1.45135 1.07727 1.07067 1.79327 1.15954 0.81458 0.84506 0.77362 1.90865 1.68395 1.31294 1.58832 1.45124 1.04756 1.08665 1.80761 1.20254 0.85642 0.85166 0.99155 1.22175 1.04314 1.00111 0.94840 1.22022 1.03317 1.00164 0.94988 1.20573 0.90149 0.80255 0.77821 1.90748 1.59887 1.48168 1.44128 1.45874 1.08766 1.28852 1.53244 1.21771 0.81263 0.96535 1.01172 1.22736 0.95016 0.91770 0.84278 1.86674 1.27606 1.92000 1.27853 1.22644 0.93329 0.83354 1.00528 1.45753 1.25420 1.01479 1.65599 1.19951 1.10748 0.83299 1.27815 0.93842 1.27311 1.07697 0.90476 1.02710 1.71036 1.22926 1.25979 1.41805 0.83249 0.71874 0.74713 0.76294 1.23637 1.19042 1.17813 1.23791 0.91206 0.93822 0.96781 0.92394 0.92411 0.91548 0.90641 0.90586 0.92383 0.92574 0.75363 0.75588 0.90843 0.89914 0.90820 0.92699 0.90226 0.90928 0.75427 0.89509 0.89139 0.76576 0.93474 0.90155 0.94715 0.91091 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.02 6.05 30.60 0.19 -0.83 16 3 C 0.14 1.66 5.67 86.38 0.49 2.15 16 4 N -0.74 -8.90 5.56 -478.52 -2.66 -11.56 16 5 C 0.71 12.26 7.98 179.05 1.43 13.69 16 6 O -0.61 -14.89 12.55 -4.00 -0.05 -14.94 16 7 N -0.73 -10.12 4.86 -441.46 -2.15 -12.27 16 8 C 0.19 3.26 0.98 2.85 0.00 3.26 16 9 C -0.16 -2.59 8.38 71.98 0.60 -1.98 16 10 C -0.15 -2.92 7.93 71.98 0.57 -2.35 16 11 C 0.53 10.39 6.65 87.66 0.58 10.97 16 12 O -0.55 -14.98 16.09 -3.03 -0.05 -15.03 16 13 N -0.71 -11.51 5.04 -463.06 -2.33 -13.84 16 14 C 0.12 2.43 5.43 86.38 0.47 2.89 16 15 C 0.11 2.90 1.74 -10.37 -0.02 2.89 16 16 O -0.53 -14.76 13.56 -148.98 -2.02 -16.78 16 17 C 0.13 4.55 8.10 83.17 0.67 5.22 16 18 N -0.65 -30.38 3.69 -738.49 -2.73 -33.11 16 19 C -0.29 -16.90 11.08 84.03 0.93 -15.97 16 20 H 0.04 2.78 8.05 -2.91 -0.02 2.76 16 21 C -0.09 -5.40 5.50 84.86 0.47 -4.93 16 22 N -0.97 -62.77 13.70 21.65 0.30 -62.47 16 23 Si 1.11 50.15 25.13 68.60 1.72 51.87 16 24 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.26 -10.44 6.64 99.48 0.66 -9.78 16 26 H -0.25 -9.85 6.13 99.48 0.61 -9.24 16 27 C 0.07 2.39 5.14 83.26 0.43 2.82 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.41 2.94 8.49 -92.71 -0.79 2.15 16 36 H 0.41 3.79 7.25 -92.70 -0.67 3.12 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 1.64 6.16 -2.39 -0.01 1.62 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.76 6.16 -2.39 -0.01 1.74 16 42 H 0.07 1.48 7.87 -2.39 -0.02 1.46 16 43 H 0.41 4.56 5.69 -92.71 -0.53 4.03 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 1.90 7.89 -2.39 -0.02 1.88 16 46 H 0.38 6.44 7.21 -74.06 -0.53 5.91 16 47 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 48 H 0.08 2.51 8.10 -2.39 -0.02 2.49 16 49 H 0.24 15.93 8.73 -92.71 -0.81 15.12 16 50 H 0.07 2.28 7.50 -2.39 -0.02 2.26 16 51 H 0.06 1.98 4.67 -2.39 -0.01 1.97 16 Total: -1.00 -82.14 402.09 -4.16 -86.31 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -1.73 Total: 24.42 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 7.53 Total: 17.41 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -9.57 Total: -133.25 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -2.12 Total: -46.75 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.72 Total: 51.87 kcal Total: -82.14 -4.16 -86.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754779838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.455 kcal (2) G-P(sol) polarization free energy of solvation -82.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds