Wall clock time and date at job start Wed Apr 1 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46990 * 2 1 4 4 C 1.53005 * 109.46959 * 240.00482 * 2 1 3 5 5 C 1.52995 * 109.47270 * 120.00361 * 2 1 3 6 6 H 1.08992 * 109.47178 * 180.53264 * 5 2 1 7 7 N 1.46504 * 109.46996 * 60.53095 * 5 2 1 8 8 C 1.34770 * 119.99785 * 85.28256 * 7 5 2 9 9 N 1.34771 * 120.00365 * 179.72565 * 8 7 5 10 10 O 1.21596 * 119.99968 * 359.71769 * 8 7 5 11 11 C 1.50705 * 109.46984 * 300.53549 * 5 2 1 12 12 O 1.21277 * 120.00125 * 102.04864 * 11 5 2 13 13 N 1.34780 * 119.99767 * 282.04797 * 11 5 2 14 14 C 1.46501 * 119.99590 * 185.20329 * 13 11 5 15 15 C 1.53002 * 109.46807 * 174.74351 * 14 13 11 16 16 H 1.08992 * 109.67948 * 56.59565 * 15 14 13 17 17 C 1.53300 * 109.68172 * 296.08346 * 15 14 13 18 18 O 1.42951 * 109.22460 * 187.97769 * 17 15 14 19 19 C 1.42960 * 114.17113 * 62.58019 * 18 17 15 20 20 C 1.53298 * 109.21896 * 297.41782 * 19 18 17 21 21 N 1.47147 * 109.68402 * 177.11902 * 15 14 13 22 22 C 1.36935 * 120.98097 * 350.23142 * 21 15 14 23 23 H 1.08003 * 120.00316 * 28.33787 * 22 21 15 24 24 C 1.38813 * 120.00376 * 208.33886 * 22 21 15 25 25 N 1.31618 * 119.99515 * 13.13896 * 24 22 21 26 26 Si 1.86799 * 120.00337 * 193.13996 * 24 22 21 27 27 H 1.48500 * 109.47140 * 94.98075 * 26 24 22 28 28 H 1.48499 * 109.47067 * 214.98387 * 26 24 22 29 29 H 1.48504 * 109.46864 * 334.98181 * 26 24 22 30 30 H 1.09001 * 109.46796 * 305.71792 * 1 2 3 31 31 H 1.09002 * 109.47106 * 65.71166 * 1 2 3 32 32 H 1.08992 * 109.47127 * 185.71307 * 1 2 3 33 33 H 1.09006 * 109.47249 * 181.77145 * 3 2 1 34 34 H 1.08998 * 109.47540 * 301.77549 * 3 2 1 35 35 H 1.09001 * 109.47577 * 61.77845 * 3 2 1 36 36 H 1.09002 * 109.46591 * 299.99747 * 4 2 1 37 37 H 1.08999 * 109.47251 * 60.00016 * 4 2 1 38 38 H 1.08997 * 109.46708 * 179.97438 * 4 2 1 39 39 H 0.96998 * 119.99802 * 264.99861 * 7 5 2 40 40 H 0.97007 * 119.99851 * 359.97438 * 9 8 7 41 41 H 0.97003 * 120.00717 * 179.97438 * 9 8 7 42 42 H 0.97002 * 119.99945 * 5.20723 * 13 11 5 43 43 H 1.09003 * 109.47114 * 294.73792 * 14 13 11 44 44 H 1.08998 * 109.47018 * 54.74219 * 14 13 11 45 45 H 1.09010 * 109.50968 * 307.90284 * 17 15 14 46 46 H 1.09000 * 109.51369 * 67.99709 * 17 15 14 47 47 H 1.09002 * 109.51609 * 57.34091 * 19 18 17 48 48 H 1.09000 * 109.51748 * 177.50139 * 19 18 17 49 49 H 1.09005 * 109.67976 * 172.02505 * 20 19 18 50 50 H 1.08994 * 109.68545 * 292.53901 * 20 19 18 51 51 H 0.97006 * 119.99694 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.1299 -0.7130 1.2539 7 7 1.5622 -2.1062 1.2427 8 6 2.2522 -3.0540 0.5779 9 7 1.8157 -4.3290 0.5764 10 8 3.2685 -2.7587 -0.0208 11 6 1.5269 -0.0186 2.4796 12 8 0.5902 -0.4811 3.0958 13 7 2.1089 1.1237 2.8954 14 6 1.6863 1.7457 4.1526 15 6 2.5857 2.9458 4.4555 16 1 2.5565 3.6462 3.6210 17 6 4.0254 2.4687 4.6788 18 8 4.8180 3.5646 5.1417 19 6 4.4008 4.0981 6.4007 20 6 2.9804 4.6587 6.2656 21 7 2.1226 3.6154 5.6812 22 6 0.9289 3.2775 6.2610 23 1 0.5358 2.2784 6.1448 24 6 0.2241 4.2192 6.9982 25 7 0.5568 5.4909 6.9308 26 14 -1.1963 3.6816 8.0857 27 1 -0.7084 3.4803 9.4738 28 1 -2.2493 4.7287 8.0781 29 1 -1.7604 2.4085 7.5698 30 1 -0.3633 0.6000 0.8344 31 1 -0.3633 0.4227 -0.9367 32 1 -0.3633 -1.0225 0.1023 33 1 3.1296 1.4427 -0.0318 34 1 1.6509 1.9655 -0.8736 35 1 1.7029 1.9471 0.9055 36 1 1.6766 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 0.7514 -2.3417 1.7202 40 1 1.0050 -4.5647 1.0542 41 1 2.3121 -5.0112 0.0977 42 1 2.8076 1.5340 2.3621 43 1 0.6526 2.0798 4.0632 44 1 1.7647 1.0194 4.9616 45 1 4.0338 1.6730 5.4238 46 1 4.4342 2.0933 3.7407 47 1 4.4106 3.3084 7.1520 48 1 5.0799 4.8959 6.7012 49 1 2.6010 4.9381 7.2485 50 1 2.9911 5.5326 5.6143 51 1 0.0645 6.1489 7.4462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:06 Heat of formation + Delta-G solvation = -87.589579 kcal Electronic energy + Delta-G solvation = -32341.083214 eV Core-core repulsion = 28083.470964 eV Total energy + Delta-G solvation = -4257.612250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.01975 -39.41254 -38.46921 -36.89983 -35.38492 -34.33638 -34.04504 -33.06401 -31.60078 -30.42629 -28.07952 -27.35873 -27.05645 -26.84103 -25.42132 -23.45588 -21.88486 -21.41513 -20.72494 -19.75074 -19.12188 -18.74960 -17.80300 -16.82832 -16.36628 -16.29269 -15.84019 -15.62230 -15.34488 -14.92656 -14.78735 -14.53052 -14.35151 -14.18784 -13.94095 -13.69584 -13.61433 -13.39404 -13.04548 -12.93502 -12.77057 -12.26831 -12.07776 -12.00472 -11.70827 -11.49721 -11.29267 -11.16191 -10.98728 -10.96811 -10.89287 -10.79410 -10.43367 -10.41540 -10.23165 -10.03273 -9.85906 -9.80675 -9.67717 -9.14911 -9.05010 -8.75515 -8.59955 -6.79392 -5.89066 -3.36985 2.47816 2.68589 3.01731 3.32517 3.35400 3.40319 3.42654 4.26747 4.35711 4.47961 4.54431 4.60191 4.73440 4.94009 5.19599 5.21523 5.28181 5.36371 5.47910 5.53880 5.59145 5.61188 5.72783 5.75732 5.81605 5.86175 5.91406 5.96786 6.06342 6.09841 6.15173 6.17392 6.25930 6.28244 6.33451 6.40693 6.47400 6.51040 6.63579 6.69956 6.74466 7.06452 7.48058 7.55672 7.67718 7.76252 7.84435 8.23315 8.28424 8.42967 9.05233 9.67019 10.23260 11.18364 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003110 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.600852 B = 9001.037169 C = 9789.372899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.160 4.160 4 C -0.127 4.127 5 C 0.155 3.845 6 H 0.110 0.890 7 N -0.725 5.725 8 C 0.709 3.291 9 N -0.868 5.868 10 O -0.591 6.591 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.721 5.721 14 C 0.128 3.872 15 C 0.131 3.869 16 H 0.040 0.960 17 C 0.052 3.948 18 O -0.393 6.393 19 C 0.035 3.965 20 C 0.144 3.856 21 N -0.587 5.587 22 C -0.261 4.261 23 H 0.074 0.926 24 C 0.008 3.992 25 N -0.902 5.902 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.406 0.594 40 H 0.397 0.603 41 H 0.414 0.586 42 H 0.399 0.601 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.077 0.923 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.029 0.971 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -13.334 -13.035 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.218 4.218 4 C -0.184 4.184 5 C 0.045 3.955 6 H 0.128 0.872 7 N -0.382 5.382 8 C 0.407 3.593 9 N -0.436 5.436 10 O -0.469 6.469 11 C 0.298 3.702 12 O -0.412 6.412 13 N -0.374 5.374 14 C 0.005 3.995 15 C 0.023 3.977 16 H 0.057 0.943 17 C -0.027 4.027 18 O -0.312 6.312 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.312 5.312 22 C -0.390 4.390 23 H 0.091 0.909 24 C -0.191 4.191 25 N -0.545 5.545 26 Si 0.734 3.266 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.201 1.201 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.243 0.757 40 H 0.225 0.775 41 H 0.246 0.754 42 H 0.235 0.765 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.047 0.953 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.459 -13.025 -13.007 18.729 hybrid contribution -1.287 -0.543 0.818 1.618 sum 2.172 -13.568 -12.189 18.368 Atomic orbital electron populations 1.21876 0.93830 1.02107 1.02122 1.20881 0.96556 0.95641 0.94347 1.22155 1.01525 0.94670 1.03435 1.21855 1.01853 0.99623 0.95077 1.20746 1.00732 0.81064 0.92923 0.87227 1.44750 1.30151 1.06926 1.56379 1.15808 0.82992 0.80865 0.79596 1.42963 1.32126 1.08569 1.59974 1.90978 1.25974 1.81045 1.48905 1.20359 0.83150 0.81280 0.85410 1.90698 1.27423 1.65794 1.57329 1.46283 1.40756 1.25219 1.25132 1.21567 0.99880 0.94500 0.83545 1.21230 0.91885 0.92906 0.91632 0.94266 1.23027 0.92385 0.88901 0.98356 1.87783 1.55056 1.49937 1.38449 1.23365 0.98866 0.97461 0.84588 1.21462 0.86127 0.89821 1.00726 1.43994 1.20237 1.43369 1.23637 1.19207 0.96754 0.95053 1.27959 0.90883 1.25108 0.97919 0.94835 1.01282 1.70000 1.42175 0.99820 1.42548 0.86237 0.81836 0.77901 0.80653 1.21352 1.21617 1.20126 0.92174 0.92408 0.92549 0.91868 0.91529 0.91298 0.92718 0.93280 0.91555 0.75697 0.77494 0.75373 0.76472 0.89811 0.90932 0.93638 0.90487 0.94066 0.90097 0.88523 0.95277 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.03 37.16 0.30 -1.22 16 2 C -0.07 -0.75 0.62 -154.51 -0.10 -0.85 16 3 C -0.16 -1.54 7.49 37.16 0.28 -1.27 16 4 C -0.13 -1.33 6.99 37.16 0.26 -1.07 16 5 C 0.16 1.78 1.96 -69.08 -0.14 1.65 16 6 H 0.11 1.29 7.57 -51.93 -0.39 0.89 16 7 N -0.72 -7.63 4.08 -59.81 -0.24 -7.87 16 8 C 0.71 7.62 7.18 -86.93 -0.62 7.00 16 9 N -0.87 -5.78 8.88 27.63 0.25 -5.53 16 10 O -0.59 -8.27 14.31 5.28 0.08 -8.20 16 11 C 0.51 7.15 5.47 -10.98 -0.06 7.09 16 12 O -0.54 -9.12 15.87 5.56 0.09 -9.03 16 13 N -0.72 -9.92 4.12 -60.29 -0.25 -10.17 16 14 C 0.13 2.28 3.85 -4.04 -0.02 2.26 16 15 C 0.13 2.53 3.19 -67.42 -0.22 2.32 16 16 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 17 C 0.05 0.90 6.05 37.31 0.23 1.13 16 18 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 19 C 0.04 0.68 6.99 37.31 0.26 0.94 16 20 C 0.14 3.33 5.41 -3.52 -0.02 3.31 16 21 N -0.59 -13.91 3.05 -164.29 -0.50 -14.41 16 22 C -0.26 -6.74 8.67 -15.06 -0.13 -6.87 16 23 H 0.07 1.87 6.26 -52.48 -0.33 1.54 16 24 C 0.01 0.21 5.02 -17.43 -0.09 0.12 16 25 N -0.90 -25.12 11.06 55.49 0.61 -24.50 16 26 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 30 H 0.06 0.75 7.39 -51.93 -0.38 0.37 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 7.43 -51.93 -0.39 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.74 5.58 -51.93 -0.29 0.45 16 36 H 0.05 0.62 5.81 -51.93 -0.30 0.32 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.76 7.50 -51.93 -0.39 0.38 16 39 H 0.41 4.07 7.72 -40.82 -0.31 3.75 16 40 H 0.40 1.68 8.84 -40.82 -0.36 1.32 16 41 H 0.41 2.24 8.93 -40.82 -0.36 1.88 16 42 H 0.40 4.59 6.14 -40.82 -0.25 4.34 16 43 H 0.08 1.72 7.34 -51.93 -0.38 1.34 16 44 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 45 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 46 H 0.08 1.09 7.47 -51.93 -0.39 0.70 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.10 2.45 6.19 -51.93 -0.32 2.13 16 50 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -32.15 389.47 -7.76 -39.91 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.20 Total: 11.19 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.06 Total: 14.53 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.13 Total: -62.49 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.21 Total: -25.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.15 -7.76 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.676 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds