Wall clock time and date at job start Wed Apr 1 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46990 * 2 1 4 4 C 1.53005 * 109.46959 * 240.00482 * 2 1 3 5 5 C 1.52995 * 109.47270 * 120.00361 * 2 1 3 6 6 H 1.08992 * 109.47178 * 180.53264 * 5 2 1 7 7 N 1.46504 * 109.46996 * 60.53095 * 5 2 1 8 8 C 1.34770 * 119.99785 * 85.28256 * 7 5 2 9 9 N 1.34771 * 120.00365 * 179.72565 * 8 7 5 10 10 O 1.21596 * 119.99968 * 359.71769 * 8 7 5 11 11 C 1.50705 * 109.46984 * 300.53549 * 5 2 1 12 12 O 1.21277 * 120.00125 * 102.04864 * 11 5 2 13 13 N 1.34780 * 119.99767 * 282.04797 * 11 5 2 14 14 C 1.46501 * 119.99590 * 185.20329 * 13 11 5 15 15 C 1.53002 * 109.46807 * 174.74351 * 14 13 11 16 16 H 1.08992 * 109.67948 * 56.59565 * 15 14 13 17 17 C 1.53300 * 109.68172 * 296.08346 * 15 14 13 18 18 O 1.42951 * 109.22460 * 187.97769 * 17 15 14 19 19 C 1.42960 * 114.17113 * 62.58019 * 18 17 15 20 20 C 1.53298 * 109.21896 * 297.41782 * 19 18 17 21 21 N 1.47147 * 109.68402 * 177.11902 * 15 14 13 22 22 C 1.36935 * 120.98097 * 350.23142 * 21 15 14 23 23 H 1.08003 * 120.00316 * 28.33787 * 22 21 15 24 24 C 1.38813 * 120.00376 * 208.33886 * 22 21 15 25 25 N 1.31618 * 119.99515 * 13.13896 * 24 22 21 26 26 Si 1.86799 * 120.00337 * 193.13996 * 24 22 21 27 27 H 1.48500 * 109.47140 * 94.98075 * 26 24 22 28 28 H 1.48499 * 109.47067 * 214.98387 * 26 24 22 29 29 H 1.48504 * 109.46864 * 334.98181 * 26 24 22 30 30 H 1.09001 * 109.46796 * 305.71792 * 1 2 3 31 31 H 1.09002 * 109.47106 * 65.71166 * 1 2 3 32 32 H 1.08992 * 109.47127 * 185.71307 * 1 2 3 33 33 H 1.09006 * 109.47249 * 181.77145 * 3 2 1 34 34 H 1.08998 * 109.47540 * 301.77549 * 3 2 1 35 35 H 1.09001 * 109.47577 * 61.77845 * 3 2 1 36 36 H 1.09002 * 109.46591 * 299.99747 * 4 2 1 37 37 H 1.08999 * 109.47251 * 60.00016 * 4 2 1 38 38 H 1.08997 * 109.46708 * 179.97438 * 4 2 1 39 39 H 0.96998 * 119.99802 * 264.99861 * 7 5 2 40 40 H 0.97007 * 119.99851 * 359.97438 * 9 8 7 41 41 H 0.97003 * 120.00717 * 179.97438 * 9 8 7 42 42 H 0.97002 * 119.99945 * 5.20723 * 13 11 5 43 43 H 1.09003 * 109.47114 * 294.73792 * 14 13 11 44 44 H 1.08998 * 109.47018 * 54.74219 * 14 13 11 45 45 H 1.09010 * 109.50968 * 307.90284 * 17 15 14 46 46 H 1.09000 * 109.51369 * 67.99709 * 17 15 14 47 47 H 1.09002 * 109.51609 * 57.34091 * 19 18 17 48 48 H 1.09000 * 109.51748 * 177.50139 * 19 18 17 49 49 H 1.09005 * 109.67976 * 172.02505 * 20 19 18 50 50 H 1.08994 * 109.68545 * 292.53901 * 20 19 18 51 51 H 0.97006 * 119.99694 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.1299 -0.7130 1.2539 7 7 1.5622 -2.1062 1.2427 8 6 2.2522 -3.0540 0.5779 9 7 1.8157 -4.3290 0.5764 10 8 3.2685 -2.7587 -0.0208 11 6 1.5269 -0.0186 2.4796 12 8 0.5902 -0.4811 3.0958 13 7 2.1089 1.1237 2.8954 14 6 1.6863 1.7457 4.1526 15 6 2.5857 2.9458 4.4555 16 1 2.5565 3.6462 3.6210 17 6 4.0254 2.4687 4.6788 18 8 4.8180 3.5646 5.1417 19 6 4.4008 4.0981 6.4007 20 6 2.9804 4.6587 6.2656 21 7 2.1226 3.6154 5.6812 22 6 0.9289 3.2775 6.2610 23 1 0.5358 2.2784 6.1448 24 6 0.2241 4.2192 6.9982 25 7 0.5568 5.4909 6.9308 26 14 -1.1963 3.6816 8.0857 27 1 -0.7084 3.4803 9.4738 28 1 -2.2493 4.7287 8.0781 29 1 -1.7604 2.4085 7.5698 30 1 -0.3633 0.6000 0.8344 31 1 -0.3633 0.4227 -0.9367 32 1 -0.3633 -1.0225 0.1023 33 1 3.1296 1.4427 -0.0318 34 1 1.6509 1.9655 -0.8736 35 1 1.7029 1.9471 0.9055 36 1 1.6766 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 0.7514 -2.3417 1.7202 40 1 1.0050 -4.5647 1.0542 41 1 2.3121 -5.0112 0.0977 42 1 2.8076 1.5340 2.3621 43 1 0.6526 2.0798 4.0632 44 1 1.7647 1.0194 4.9616 45 1 4.0338 1.6730 5.4238 46 1 4.4342 2.0933 3.7407 47 1 4.4106 3.3084 7.1520 48 1 5.0799 4.8959 6.7012 49 1 2.6010 4.9381 7.2485 50 1 2.9911 5.5326 5.6143 51 1 0.0645 6.1489 7.4462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:05 Heat of formation + Delta-G solvation = -113.601917 kcal Electronic energy + Delta-G solvation = -32342.211193 eV Core-core repulsion = 28083.470964 eV Total energy + Delta-G solvation = -4258.740229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01723 -40.55078 -39.92646 -37.86795 -36.86125 -35.93428 -34.95309 -33.84424 -33.32307 -32.10643 -29.32400 -28.55804 -28.21169 -27.83256 -26.77751 -25.27323 -23.40739 -22.27433 -21.94136 -21.38466 -20.09959 -19.64824 -18.85742 -18.28470 -17.69168 -17.36877 -17.02663 -16.98223 -16.78234 -16.28017 -16.05798 -15.84884 -15.52625 -15.43715 -15.25013 -15.11996 -14.75764 -14.70754 -14.52547 -14.26641 -13.87779 -13.56191 -13.09661 -13.05927 -12.96753 -12.88629 -12.77394 -12.60004 -12.53639 -12.26678 -12.10797 -12.03937 -11.89408 -11.86663 -11.72739 -11.33929 -11.30520 -10.96877 -10.71446 -10.58575 -10.56981 -10.13672 -9.97524 -8.72271 -7.90514 -5.40200 1.43013 1.44554 1.46785 1.54975 1.66458 2.15632 2.29322 2.48206 2.98219 3.25367 3.41674 3.57117 3.64477 3.71673 3.85221 3.91766 4.06591 4.09288 4.24165 4.33722 4.41504 4.49123 4.53744 4.60698 4.66856 4.72896 4.79700 4.90259 4.94510 4.97630 5.01578 5.03418 5.06268 5.12935 5.20581 5.25546 5.31837 5.36707 5.42591 5.49982 5.59023 5.63918 5.85228 6.08112 6.25977 6.32952 6.42629 7.03128 7.06917 7.09890 7.66741 7.73651 8.26567 9.14828 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003110 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.600852 B = 9001.037169 C = 9789.372899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.160 4.160 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.113 0.887 7 N -0.723 5.723 8 C 0.706 3.294 9 N -0.850 5.850 10 O -0.624 6.624 11 C 0.517 3.483 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.150 3.850 15 C 0.130 3.870 16 H 0.037 0.963 17 C 0.056 3.944 18 O -0.396 6.396 19 C 0.047 3.953 20 C 0.148 3.852 21 N -0.606 5.606 22 C -0.259 4.259 23 H 0.072 0.928 24 C -0.043 4.043 25 N -0.932 5.932 26 Si 0.961 3.039 27 H -0.284 1.284 28 H -0.294 1.294 29 H -0.272 1.272 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.409 0.591 40 H 0.411 0.589 41 H 0.423 0.577 42 H 0.413 0.587 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.117 0.883 47 H 0.045 0.955 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.005 0.995 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 -14.921 -14.263 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.218 4.218 4 C -0.174 4.174 5 C 0.053 3.947 6 H 0.131 0.869 7 N -0.380 5.380 8 C 0.404 3.596 9 N -0.419 5.419 10 O -0.504 6.504 11 C 0.303 3.697 12 O -0.445 6.445 13 N -0.363 5.363 14 C 0.025 3.975 15 C 0.024 3.976 16 H 0.055 0.945 17 C -0.022 4.022 18 O -0.315 6.315 19 C -0.030 4.030 20 C 0.023 3.977 21 N -0.331 5.331 22 C -0.389 4.389 23 H 0.090 0.910 24 C -0.239 4.239 25 N -0.577 5.577 26 Si 0.790 3.210 27 H -0.211 1.211 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.241 0.759 41 H 0.256 0.744 42 H 0.252 0.748 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.135 0.865 47 H 0.063 0.937 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.023 0.977 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.376 -14.664 -14.261 20.917 hybrid contribution -1.585 -0.110 1.128 1.948 sum 2.791 -14.774 -13.132 19.963 Atomic orbital electron populations 1.21842 0.94083 1.01864 1.01799 1.20862 0.96240 0.96052 0.93780 1.22165 1.02530 0.93912 1.03207 1.21742 1.01154 0.99186 0.95336 1.20675 1.00742 0.81489 0.91794 0.86896 1.44698 1.30215 1.06629 1.56492 1.15943 0.82599 0.81719 0.79299 1.42798 1.32421 1.07296 1.59359 1.90958 1.27409 1.81767 1.50311 1.20806 0.82392 0.80813 0.85664 1.90687 1.28844 1.66563 1.58447 1.46055 1.41075 1.25197 1.23949 1.21035 0.97941 0.93625 0.84872 1.21370 0.93546 0.92888 0.89836 0.94538 1.23112 0.90646 0.88227 1.00199 1.87790 1.55048 1.50404 1.38236 1.23217 0.96684 0.98215 0.84927 1.21301 0.88409 0.89393 0.98632 1.44238 1.19966 1.43574 1.25352 1.19426 0.97240 0.94905 1.27332 0.90999 1.25756 1.00291 0.94948 1.02890 1.70138 1.43353 1.00579 1.43662 0.85344 0.79243 0.77305 0.79149 1.21080 1.22098 1.19732 0.94356 0.91196 0.92390 0.90408 0.90599 0.92600 0.93568 0.92045 0.92428 0.75348 0.75881 0.74391 0.74797 0.92940 0.92364 0.93678 0.86526 0.93714 0.87435 0.91244 0.97674 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.03 71.98 0.58 -2.21 16 2 C -0.07 -1.29 0.62 -52.18 -0.03 -1.32 16 3 C -0.16 -2.77 7.49 71.98 0.54 -2.23 16 4 C -0.12 -2.21 6.99 71.98 0.50 -1.71 16 5 C 0.16 3.50 1.96 44.24 0.09 3.59 16 6 H 0.11 2.42 7.57 -2.39 -0.02 2.40 16 7 N -0.72 -14.20 4.08 -461.42 -1.88 -16.08 16 8 C 0.71 13.99 7.18 179.06 1.29 15.27 16 9 N -0.85 -9.60 8.88 -184.75 -1.64 -11.24 16 10 O -0.62 -16.50 14.31 -4.02 -0.06 -16.56 16 11 C 0.52 13.96 5.47 87.66 0.48 14.44 16 12 O -0.57 -19.16 15.87 -3.02 -0.05 -19.20 16 13 N -0.71 -18.76 4.12 -463.05 -1.91 -20.67 16 14 C 0.15 5.32 3.85 86.38 0.33 5.66 16 15 C 0.13 4.96 3.19 44.97 0.14 5.11 16 16 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 17 C 0.06 1.82 6.05 72.08 0.44 2.26 16 18 O -0.40 -14.34 10.74 -148.98 -1.60 -15.94 16 19 C 0.05 1.76 6.99 72.08 0.50 2.27 16 20 C 0.15 6.94 5.41 86.35 0.47 7.40 16 21 N -0.61 -29.01 3.05 -673.70 -2.05 -31.06 16 22 C -0.26 -13.64 8.67 84.03 0.73 -12.91 16 23 H 0.07 3.74 6.26 -2.91 -0.02 3.72 16 24 C -0.04 -2.33 5.02 84.86 0.43 -1.90 16 25 N -0.93 -53.36 11.06 21.65 0.24 -53.12 16 26 Si 0.96 44.36 29.57 68.60 2.03 46.39 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 30 H 0.04 0.94 7.39 -2.39 -0.02 0.92 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.13 7.43 -2.39 -0.02 1.11 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.12 5.58 -2.39 -0.01 1.10 16 36 H 0.05 0.96 5.81 -2.39 -0.01 0.94 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.21 7.50 -2.39 -0.02 1.19 16 39 H 0.41 7.68 7.72 -92.71 -0.72 6.97 16 40 H 0.41 2.58 8.84 -92.70 -0.82 1.76 16 41 H 0.42 3.69 8.93 -92.71 -0.83 2.86 16 42 H 0.41 8.68 6.14 -92.71 -0.57 8.11 16 43 H 0.05 2.21 7.34 -2.39 -0.02 2.19 16 44 H 0.06 2.25 7.78 -2.39 -0.02 2.23 16 45 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 46 H 0.12 2.86 7.47 -2.39 -0.02 2.85 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 49 H 0.07 3.62 6.19 -2.38 -0.01 3.61 16 50 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -70.29 389.47 -2.39 -72.67 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -1.94 Total: 31.10 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 6.48 Total: 33.71 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -7.25 Total: -132.17 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.71 Total: -51.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.29 -2.39 -72.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.928 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds