Wall clock time and date at job start Wed Apr 1 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47279 * 240.00022 * 2 1 3 5 5 C 1.53006 * 109.47195 * 119.99777 * 2 1 3 6 6 H 1.09001 * 109.46782 * 185.01131 * 5 2 1 7 7 N 1.46489 * 109.47293 * 305.01296 * 5 2 1 8 8 C 1.34774 * 120.00539 * 274.99818 * 7 5 2 9 9 N 1.34770 * 120.00326 * 179.97438 * 8 7 5 10 10 O 1.21592 * 119.99721 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.46880 * 65.01596 * 5 2 1 12 12 O 1.21280 * 120.00277 * 268.18563 * 11 5 2 13 13 N 1.34779 * 120.00171 * 88.18798 * 11 5 2 14 14 C 1.46503 * 120.00108 * 175.02047 * 13 11 5 15 15 C 1.53002 * 109.47136 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.67739 * 300.74510 * 15 14 13 17 17 C 1.53289 * 109.68051 * 180.23447 * 15 14 13 18 18 O 1.42967 * 109.22192 * 187.94007 * 17 15 14 19 19 C 1.42959 * 114.16951 * 62.57334 * 18 17 15 20 20 C 1.53293 * 109.22182 * 297.42343 * 19 18 17 21 21 N 1.47149 * 108.38777 * 52.30381 * 20 19 18 22 22 C 1.36932 * 120.98443 * 129.48461 * 21 20 19 23 23 H 1.08002 * 120.00004 * 211.69536 * 22 21 20 24 24 C 1.38811 * 119.99879 * 31.70114 * 22 21 20 25 25 N 1.31611 * 120.00367 * 9.66492 * 24 22 21 26 26 Si 1.86807 * 119.99914 * 189.66699 * 24 22 21 27 27 H 1.48504 * 109.47045 * 89.99689 * 26 24 22 28 28 H 1.48496 * 109.47072 * 209.99878 * 26 24 22 29 29 H 1.48498 * 109.46930 * 329.99896 * 26 24 22 30 30 H 1.08995 * 109.47234 * 299.99637 * 1 2 3 31 31 H 1.08997 * 109.47215 * 60.00451 * 1 2 3 32 32 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47130 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47415 * 300.00001 * 3 2 1 35 35 H 1.09006 * 109.47141 * 60.00554 * 3 2 1 36 36 H 1.08994 * 109.47297 * 306.09949 * 4 2 1 37 37 H 1.09001 * 109.47414 * 66.10517 * 4 2 1 38 38 H 1.09000 * 109.47521 * 186.10011 * 4 2 1 39 39 H 0.97000 * 119.99825 * 94.99990 * 7 5 2 40 40 H 0.97000 * 120.00038 * 0.02562 * 9 8 7 41 41 H 0.97001 * 120.00184 * 180.02562 * 9 8 7 42 42 H 0.97004 * 120.00128 * 355.01494 * 13 11 5 43 43 H 1.09002 * 109.46792 * 59.99950 * 14 13 11 44 44 H 1.08997 * 109.47137 * 300.00179 * 14 13 11 45 45 H 1.09004 * 109.51424 * 307.85583 * 17 15 14 46 46 H 1.08994 * 109.51974 * 67.95933 * 17 15 14 47 47 H 1.09003 * 109.51095 * 57.35111 * 19 18 17 48 48 H 1.09003 * 109.50811 * 177.49611 * 19 18 17 49 49 H 1.09008 * 109.67915 * 172.02344 * 20 19 18 50 50 H 1.08997 * 109.68161 * 292.53970 * 20 19 18 51 51 H 0.96998 * 120.00849 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1263 -0.6441 1.2953 7 7 1.4557 -0.1039 2.4423 8 6 2.0344 0.9826 2.9911 9 7 1.4965 1.5509 4.0884 10 8 3.0412 1.4507 2.4956 11 6 1.6417 -2.1733 1.1888 12 8 0.5991 -2.5376 1.6901 13 7 2.4440 -3.0673 0.5776 14 6 2.1120 -4.4938 0.6130 15 6 3.1764 -5.2843 -0.1507 16 1 3.2205 -4.9377 -1.1833 17 6 2.8305 -6.7773 -0.1217 18 8 3.9182 -7.5233 -0.6733 19 6 5.1394 -7.4074 0.0609 20 6 5.6034 -5.9465 0.0412 21 7 4.4877 -5.0990 0.4907 22 6 4.6645 -4.1652 1.4765 23 1 3.8505 -3.9237 2.1439 24 6 5.8901 -3.5289 1.6180 25 7 6.8188 -3.6771 0.6973 26 14 6.2214 -2.4623 3.1155 27 1 6.8090 -3.2946 4.1959 28 1 7.1712 -1.3802 2.7521 29 1 4.9472 -1.8643 3.5888 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.5903 -1.7125 -1.3055 37 1 1.7687 -0.1482 -2.1359 38 1 3.1245 -0.8168 -1.1963 39 1 0.6523 -0.4770 2.8374 40 1 0.6930 1.1777 4.4835 41 1 1.9127 2.3331 4.4831 42 1 3.2412 -2.7663 0.1142 43 1 1.1390 -4.6520 0.1478 44 1 2.0794 -4.8337 1.6481 45 1 2.6589 -7.0914 0.9079 46 1 1.9308 -6.9543 -0.7110 47 1 4.9762 -7.7237 1.0912 48 1 5.9012 -8.0377 -0.3979 49 1 6.4528 -5.8220 0.7130 50 1 5.8926 -5.6668 -0.9719 51 1 7.6753 -3.2329 0.7963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:10 Heat of formation + Delta-G solvation = -88.811340 kcal Electronic energy + Delta-G solvation = -33394.635837 eV Core-core repulsion = 29136.970607 eV Total energy + Delta-G solvation = -4257.665229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.68029 -39.15857 -38.39495 -36.62997 -35.37810 -33.92774 -33.61317 -32.81834 -31.62575 -30.48246 -27.83019 -27.11262 -27.10484 -26.71576 -24.97669 -23.47044 -21.82349 -21.16894 -20.35955 -19.71649 -18.80528 -18.45772 -17.54282 -16.70800 -16.11993 -16.04165 -15.77473 -15.55091 -15.24940 -14.68026 -14.60037 -14.42663 -14.07608 -13.95763 -13.92732 -13.71568 -13.36878 -13.16815 -12.96361 -12.61599 -12.53003 -12.02369 -11.88319 -11.83407 -11.58977 -11.46507 -11.15510 -11.01834 -10.89220 -10.78287 -10.74154 -10.62974 -10.43762 -10.23452 -10.13604 -10.08102 -9.69065 -9.59612 -9.51490 -9.04595 -8.80350 -8.68764 -8.33785 -6.74732 -5.92338 -3.43537 2.71829 3.11257 3.31187 3.32603 3.41002 3.43149 3.74855 4.34028 4.50727 4.52762 4.84633 4.93096 5.03984 5.12159 5.25457 5.29891 5.54130 5.55450 5.68988 5.70281 5.79133 5.82329 5.84559 5.96235 5.98320 6.03004 6.05510 6.10820 6.12666 6.17622 6.21884 6.30112 6.31423 6.42398 6.49770 6.54936 6.61566 6.71510 6.73496 6.93224 7.00497 7.05326 7.47903 7.67687 7.84350 8.02543 8.08788 8.27418 8.65018 8.71278 9.03845 9.63947 10.23105 11.13775 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.004592 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.707563 B = 6095.916377 C = 7312.240921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.150 4.150 5 C 0.155 3.845 6 H 0.110 0.890 7 N -0.723 5.723 8 C 0.706 3.294 9 N -0.870 5.870 10 O -0.585 6.585 11 C 0.514 3.486 12 O -0.561 6.561 13 N -0.686 5.686 14 C 0.136 3.864 15 C 0.125 3.875 16 H 0.042 0.958 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.035 3.965 20 C 0.144 3.856 21 N -0.590 5.590 22 C -0.259 4.259 23 H 0.072 0.928 24 C 0.014 3.986 25 N -0.897 5.897 26 Si 0.895 3.105 27 H -0.288 1.288 28 H -0.288 1.288 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.403 0.597 40 H 0.395 0.605 41 H 0.413 0.587 42 H 0.417 0.583 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.030 0.970 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 5.021 0.331 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.208 4.208 5 C 0.046 3.954 6 H 0.128 0.872 7 N -0.380 5.380 8 C 0.405 3.595 9 N -0.438 5.438 10 O -0.463 6.463 11 C 0.298 3.702 12 O -0.441 6.441 13 N -0.337 5.337 14 C 0.012 3.988 15 C 0.018 3.982 16 H 0.059 0.941 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.316 5.316 22 C -0.388 4.388 23 H 0.089 0.911 24 C -0.186 4.186 25 N -0.540 5.540 26 Si 0.725 3.275 27 H -0.215 1.215 28 H -0.214 1.214 29 H -0.202 1.202 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.239 0.761 40 H 0.223 0.777 41 H 0.245 0.755 42 H 0.256 0.744 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.048 0.952 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.109 4.979 -0.030 12.173 hybrid contribution 0.240 0.813 1.507 1.729 sum -10.868 5.792 1.477 12.403 Atomic orbital electron populations 1.21839 0.94085 1.02352 1.01262 1.20857 0.96299 0.96550 0.93590 1.21869 1.01926 0.93852 1.00929 1.21999 1.01994 1.00408 0.96412 1.20757 1.00368 0.89414 0.84906 0.87185 1.44717 1.31830 1.30679 1.30774 1.15853 0.82924 0.80409 0.80364 1.42947 1.33377 1.35918 1.31570 1.90997 1.25852 1.65254 1.64175 1.20279 0.83950 0.87410 0.78530 1.90611 1.24353 1.80815 1.48316 1.46043 1.27256 1.06494 1.53911 1.21190 0.96485 0.80129 1.01022 1.21430 0.87773 0.93279 0.95749 0.94057 1.22855 0.89209 0.92160 0.98063 1.87802 1.20028 1.69599 1.53660 1.23362 0.85747 1.00291 0.94931 1.21417 0.91859 0.85434 0.99426 1.44061 1.04166 1.41061 1.42323 1.19161 0.98337 1.14745 1.06569 0.91090 1.25136 0.98041 0.97999 0.97441 1.69951 1.06026 1.45335 1.32696 0.86406 0.78370 0.80045 0.82726 1.21463 1.21374 1.20240 0.92796 0.92864 0.92018 0.91774 0.93525 0.92373 0.92040 0.92018 0.91645 0.76071 0.77713 0.75514 0.74389 0.92165 0.91476 0.93569 0.89949 0.94154 0.90252 0.88947 0.95230 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.03 37.16 0.30 -1.42 16 2 C -0.07 -0.98 0.62 -154.51 -0.10 -1.07 16 3 C -0.13 -1.80 7.08 37.16 0.26 -1.54 16 4 C -0.15 -1.99 7.39 37.16 0.27 -1.72 16 5 C 0.16 2.49 1.94 -69.09 -0.13 2.35 16 6 H 0.11 2.07 7.58 -51.93 -0.39 1.68 16 7 N -0.72 -10.40 4.03 -59.82 -0.24 -10.64 16 8 C 0.71 10.45 7.41 -86.93 -0.64 9.81 16 9 N -0.87 -8.61 8.88 27.63 0.25 -8.37 16 10 O -0.59 -10.93 14.31 5.29 0.08 -10.86 16 11 C 0.51 8.86 5.33 -10.99 -0.06 8.80 16 12 O -0.56 -10.34 15.28 5.56 0.08 -10.26 16 13 N -0.69 -12.18 2.89 -60.29 -0.17 -12.36 16 14 C 0.14 2.38 4.45 -4.04 -0.02 2.36 16 15 C 0.12 2.34 3.20 -67.42 -0.22 2.13 16 16 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 17 C 0.06 0.96 6.29 37.31 0.23 1.20 16 18 O -0.39 -7.46 10.74 -35.23 -0.38 -7.84 16 19 C 0.03 0.65 6.98 37.31 0.26 0.91 16 20 C 0.14 3.21 5.37 -3.54 -0.02 3.19 16 21 N -0.59 -13.20 3.03 -164.31 -0.50 -13.70 16 22 C -0.26 -6.28 7.08 -15.06 -0.11 -6.39 16 23 H 0.07 1.76 5.84 -52.49 -0.31 1.45 16 24 C 0.01 0.36 5.08 -17.43 -0.09 0.27 16 25 N -0.90 -24.03 11.11 55.49 0.62 -23.41 16 26 Si 0.90 21.42 29.56 -169.99 -5.03 16.39 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 30 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.84 6.85 -51.93 -0.36 0.49 16 33 H 0.06 1.01 7.84 -51.92 -0.41 0.60 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.85 5.64 -51.93 -0.29 0.56 16 36 H 0.06 0.84 6.83 -51.93 -0.35 0.48 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 39 H 0.40 5.23 7.84 -40.82 -0.32 4.91 16 40 H 0.40 2.75 8.84 -40.82 -0.36 2.38 16 41 H 0.41 3.54 8.93 -40.82 -0.36 3.17 16 42 H 0.42 7.95 6.80 -40.82 -0.28 7.68 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.09 2.28 6.34 -51.92 -0.33 1.95 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -30.42 389.50 -7.80 -38.22 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -8.32 Total: 18.07 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: -0.05 Total: 18.88 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -0.05 Total: -68.48 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.22 Total: -28.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.42 -7.80 -38.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.592 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds