Wall clock time and date at job start Wed Apr 1 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47279 * 240.00022 * 2 1 3 5 5 C 1.53006 * 109.47195 * 119.99777 * 2 1 3 6 6 H 1.09001 * 109.46782 * 185.01131 * 5 2 1 7 7 N 1.46489 * 109.47293 * 305.01296 * 5 2 1 8 8 C 1.34774 * 120.00539 * 274.99818 * 7 5 2 9 9 N 1.34770 * 120.00326 * 179.97438 * 8 7 5 10 10 O 1.21592 * 119.99721 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.46880 * 65.01596 * 5 2 1 12 12 O 1.21280 * 120.00277 * 268.18563 * 11 5 2 13 13 N 1.34779 * 120.00171 * 88.18798 * 11 5 2 14 14 C 1.46503 * 120.00108 * 175.02047 * 13 11 5 15 15 C 1.53002 * 109.47136 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.67739 * 300.74510 * 15 14 13 17 17 C 1.53289 * 109.68051 * 180.23447 * 15 14 13 18 18 O 1.42967 * 109.22192 * 187.94007 * 17 15 14 19 19 C 1.42959 * 114.16951 * 62.57334 * 18 17 15 20 20 C 1.53293 * 109.22182 * 297.42343 * 19 18 17 21 21 N 1.47149 * 108.38777 * 52.30381 * 20 19 18 22 22 C 1.36932 * 120.98443 * 129.48461 * 21 20 19 23 23 H 1.08002 * 120.00004 * 211.69536 * 22 21 20 24 24 C 1.38811 * 119.99879 * 31.70114 * 22 21 20 25 25 N 1.31611 * 120.00367 * 9.66492 * 24 22 21 26 26 Si 1.86807 * 119.99914 * 189.66699 * 24 22 21 27 27 H 1.48504 * 109.47045 * 89.99689 * 26 24 22 28 28 H 1.48496 * 109.47072 * 209.99878 * 26 24 22 29 29 H 1.48498 * 109.46930 * 329.99896 * 26 24 22 30 30 H 1.08995 * 109.47234 * 299.99637 * 1 2 3 31 31 H 1.08997 * 109.47215 * 60.00451 * 1 2 3 32 32 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47130 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47415 * 300.00001 * 3 2 1 35 35 H 1.09006 * 109.47141 * 60.00554 * 3 2 1 36 36 H 1.08994 * 109.47297 * 306.09949 * 4 2 1 37 37 H 1.09001 * 109.47414 * 66.10517 * 4 2 1 38 38 H 1.09000 * 109.47521 * 186.10011 * 4 2 1 39 39 H 0.97000 * 119.99825 * 94.99990 * 7 5 2 40 40 H 0.97000 * 120.00038 * 0.02562 * 9 8 7 41 41 H 0.97001 * 120.00184 * 180.02562 * 9 8 7 42 42 H 0.97004 * 120.00128 * 355.01494 * 13 11 5 43 43 H 1.09002 * 109.46792 * 59.99950 * 14 13 11 44 44 H 1.08997 * 109.47137 * 300.00179 * 14 13 11 45 45 H 1.09004 * 109.51424 * 307.85583 * 17 15 14 46 46 H 1.08994 * 109.51974 * 67.95933 * 17 15 14 47 47 H 1.09003 * 109.51095 * 57.35111 * 19 18 17 48 48 H 1.09003 * 109.50811 * 177.49611 * 19 18 17 49 49 H 1.09008 * 109.67915 * 172.02344 * 20 19 18 50 50 H 1.08997 * 109.68161 * 292.53970 * 20 19 18 51 51 H 0.96998 * 120.00849 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1263 -0.6441 1.2953 7 7 1.4557 -0.1039 2.4423 8 6 2.0344 0.9826 2.9911 9 7 1.4965 1.5509 4.0884 10 8 3.0412 1.4507 2.4956 11 6 1.6417 -2.1733 1.1888 12 8 0.5991 -2.5376 1.6901 13 7 2.4440 -3.0673 0.5776 14 6 2.1120 -4.4938 0.6130 15 6 3.1764 -5.2843 -0.1507 16 1 3.2205 -4.9377 -1.1833 17 6 2.8305 -6.7773 -0.1217 18 8 3.9182 -7.5233 -0.6733 19 6 5.1394 -7.4074 0.0609 20 6 5.6034 -5.9465 0.0412 21 7 4.4877 -5.0990 0.4907 22 6 4.6645 -4.1652 1.4765 23 1 3.8505 -3.9237 2.1439 24 6 5.8901 -3.5289 1.6180 25 7 6.8188 -3.6771 0.6973 26 14 6.2214 -2.4623 3.1155 27 1 6.8090 -3.2946 4.1959 28 1 7.1712 -1.3802 2.7521 29 1 4.9472 -1.8643 3.5888 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.5903 -1.7125 -1.3055 37 1 1.7687 -0.1482 -2.1359 38 1 3.1245 -0.8168 -1.1963 39 1 0.6523 -0.4770 2.8374 40 1 0.6930 1.1777 4.4835 41 1 1.9127 2.3331 4.4831 42 1 3.2412 -2.7663 0.1142 43 1 1.1390 -4.6520 0.1478 44 1 2.0794 -4.8337 1.6481 45 1 2.6589 -7.0914 0.9079 46 1 1.9308 -6.9543 -0.7110 47 1 4.9762 -7.7237 1.0912 48 1 5.9012 -8.0377 -0.3979 49 1 6.4528 -5.8220 0.7130 50 1 5.8926 -5.6668 -0.9719 51 1 7.6753 -3.2329 0.7963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:08 Heat of formation + Delta-G solvation = -112.573008 kcal Electronic energy + Delta-G solvation = -33395.666220 eV Core-core repulsion = 29136.970607 eV Total energy + Delta-G solvation = -4258.695613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94790 -40.53407 -39.86456 -37.85396 -36.92444 -35.39988 -35.01346 -33.88906 -33.29606 -32.15925 -29.25735 -28.70959 -28.15943 -27.86592 -26.41603 -25.22567 -23.38688 -22.32245 -21.72749 -21.36510 -20.01346 -19.65715 -18.80806 -18.27028 -17.64597 -17.46307 -17.06859 -16.95298 -16.56998 -16.26477 -16.08718 -15.85075 -15.54818 -15.35277 -15.21768 -15.11888 -14.78904 -14.55688 -14.50378 -14.13079 -13.81198 -13.44781 -13.13135 -13.09566 -12.91864 -12.88974 -12.77809 -12.57623 -12.50597 -12.26338 -12.18078 -11.98325 -11.89877 -11.86299 -11.73573 -11.40938 -11.29236 -10.92929 -10.66200 -10.61398 -10.56801 -10.02495 -9.82985 -8.61443 -7.89729 -5.39873 1.34656 1.42919 1.44442 1.44864 1.84878 2.14302 2.38121 2.45257 3.05633 3.27035 3.44741 3.53154 3.66734 3.72993 3.89078 4.04132 4.10343 4.24819 4.34036 4.37004 4.49338 4.51616 4.61943 4.66822 4.68364 4.74287 4.76945 4.79740 4.88850 4.99605 5.00715 5.02900 5.12513 5.13701 5.22299 5.31784 5.32655 5.41444 5.48772 5.53022 5.65690 5.67558 5.83607 6.01565 6.30750 6.37696 6.61304 7.02773 7.09981 7.20523 7.62777 7.76019 8.31802 9.14235 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.004592 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.707563 B = 6095.916377 C = 7312.240921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.120 4.120 4 C -0.147 4.147 5 C 0.158 3.842 6 H 0.077 0.923 7 N -0.718 5.718 8 C 0.700 3.300 9 N -0.846 5.846 10 O -0.628 6.628 11 C 0.518 3.482 12 O -0.569 6.569 13 N -0.691 5.691 14 C 0.142 3.858 15 C 0.125 3.875 16 H 0.039 0.961 17 C 0.058 3.942 18 O -0.397 6.397 19 C 0.047 3.953 20 C 0.149 3.851 21 N -0.604 5.604 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.026 4.026 25 N -0.922 5.922 26 Si 0.937 3.063 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.283 1.283 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.412 0.588 40 H 0.413 0.587 41 H 0.422 0.578 42 H 0.410 0.590 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.119 0.881 47 H 0.043 0.957 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.007 0.993 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 4.610 0.250 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.177 4.177 4 C -0.205 4.205 5 C 0.048 3.952 6 H 0.095 0.905 7 N -0.376 5.376 8 C 0.398 3.602 9 N -0.416 5.416 10 O -0.509 6.509 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.341 5.341 14 C 0.018 3.982 15 C 0.019 3.981 16 H 0.056 0.944 17 C -0.021 4.021 18 O -0.316 6.316 19 C -0.031 4.031 20 C 0.023 3.977 21 N -0.330 5.330 22 C -0.365 4.365 23 H 0.086 0.914 24 C -0.223 4.223 25 N -0.568 5.568 26 Si 0.768 3.232 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.209 1.209 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.249 0.751 40 H 0.243 0.757 41 H 0.256 0.744 42 H 0.248 0.752 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.137 0.863 47 H 0.062 0.938 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.025 0.975 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.751 4.550 -0.064 14.484 hybrid contribution 0.963 0.944 1.546 2.051 sum -12.787 5.493 1.482 13.996 Atomic orbital electron populations 1.21761 0.92432 1.01992 1.02486 1.20848 0.97431 0.96044 0.92520 1.21763 1.00246 0.94110 1.01577 1.21975 1.00845 1.00583 0.97081 1.20641 0.98618 0.89191 0.86790 0.90535 1.44610 1.31936 1.30581 1.30470 1.16075 0.82580 0.80396 0.81127 1.42716 1.33518 1.35553 1.29807 1.90976 1.27830 1.66416 1.65666 1.20402 0.83613 0.87707 0.77927 1.90600 1.24684 1.81065 1.48650 1.46078 1.27061 1.06862 1.54063 1.21173 0.97193 0.79669 1.00171 1.21584 0.86165 0.95110 0.95262 0.94366 1.22994 0.89807 0.90148 0.99135 1.87808 1.20182 1.69679 1.53928 1.23201 0.86486 0.97819 0.95573 1.21242 0.91352 0.87873 0.97237 1.44262 1.05610 1.40792 1.42299 1.19191 0.97514 1.13566 1.06224 0.91363 1.25497 0.98618 0.99458 0.98761 1.70047 1.06108 1.46757 1.33862 0.85743 0.77331 0.78749 0.81330 1.21487 1.22842 1.20920 0.92315 0.90940 0.93048 0.94297 0.91374 0.93069 0.92310 0.89946 0.93336 0.75077 0.75652 0.74446 0.75249 0.89530 0.92876 0.93210 0.86318 0.93822 0.87909 0.91707 0.97519 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.03 71.98 0.58 -2.36 16 2 C -0.07 -1.78 0.62 -52.18 -0.03 -1.81 16 3 C -0.12 -3.29 7.08 71.98 0.51 -2.78 16 4 C -0.15 -3.79 7.39 71.98 0.53 -3.26 16 5 C 0.16 5.07 1.94 44.25 0.09 5.15 16 6 H 0.08 3.01 7.58 -2.39 -0.02 2.99 16 7 N -0.72 -20.18 4.03 -461.43 -1.86 -22.04 16 8 C 0.70 20.35 7.41 179.06 1.33 21.68 16 9 N -0.85 -15.42 8.88 -184.75 -1.64 -17.06 16 10 O -0.63 -23.82 14.31 -4.00 -0.06 -23.88 16 11 C 0.52 17.54 5.33 87.66 0.47 18.00 16 12 O -0.57 -20.12 15.28 -3.03 -0.05 -20.17 16 13 N -0.69 -24.25 2.89 -463.05 -1.34 -25.59 16 14 C 0.14 4.73 4.45 86.38 0.38 5.11 16 15 C 0.12 4.50 3.20 44.96 0.14 4.65 16 16 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 17 C 0.06 1.80 6.29 72.08 0.45 2.25 16 18 O -0.40 -14.08 10.74 -148.98 -1.60 -15.68 16 19 C 0.05 1.70 6.98 72.08 0.50 2.21 16 20 C 0.15 6.65 5.37 86.35 0.46 7.12 16 21 N -0.60 -26.89 3.03 -673.74 -2.04 -28.94 16 22 C -0.23 -11.47 7.08 84.03 0.60 -10.87 16 23 H 0.07 3.38 5.84 -2.91 -0.02 3.36 16 24 C -0.03 -1.37 5.08 84.86 0.43 -0.94 16 25 N -0.92 -50.95 11.11 21.65 0.24 -50.71 16 26 Si 0.94 45.34 29.56 68.60 2.03 47.37 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 29 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 30 H 0.06 1.27 7.47 -2.39 -0.02 1.25 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.29 6.85 -2.39 -0.02 1.27 16 33 H 0.04 1.25 7.84 -2.38 -0.02 1.23 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.47 5.64 -2.38 -0.01 1.46 16 36 H 0.06 1.53 6.83 -2.39 -0.02 1.52 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.40 8.02 -2.39 -0.02 1.38 16 39 H 0.41 10.09 7.84 -92.71 -0.73 9.36 16 40 H 0.41 4.79 8.84 -92.71 -0.82 3.97 16 41 H 0.42 6.56 8.93 -92.71 -0.83 5.73 16 42 H 0.41 15.85 6.80 -92.71 -0.63 15.22 16 43 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 45 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.06 3.27 6.34 -2.38 -0.02 3.25 16 50 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -66.49 389.50 -1.90 -68.39 By element: Atomic # 1 Polarization: 46.18 SS G_CDS: -2.02 Total: 44.16 kcal Atomic # 6 Polarization: 37.70 SS G_CDS: 6.44 Total: 44.14 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -6.64 Total: -144.33 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -1.70 Total: -59.73 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.49 -1.90 -68.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.183 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds