Wall clock time and date at job start Wed Apr 1 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46761 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00579 * 2 1 3 5 5 C 1.53000 * 109.47456 * 120.00484 * 2 1 3 6 6 H 1.09002 * 109.47023 * 186.99922 * 5 2 1 7 7 N 1.46502 * 109.46973 * 66.99730 * 5 2 1 8 8 C 1.34772 * 119.99801 * 85.27907 * 7 5 2 9 9 N 1.34774 * 119.99580 * 179.72279 * 8 7 5 10 10 O 1.21589 * 120.00185 * 359.71906 * 8 7 5 11 11 C 1.50701 * 109.46775 * 306.99921 * 5 2 1 12 12 O 1.21280 * 120.00169 * 109.12363 * 11 5 2 13 13 N 1.34777 * 119.99759 * 289.11620 * 11 5 2 14 14 C 1.46508 * 119.99946 * 175.96668 * 13 11 5 15 15 C 1.53000 * 109.47121 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.68016 * 60.96478 * 15 14 13 17 17 C 1.53294 * 109.68155 * 181.48411 * 15 14 13 18 18 O 1.42974 * 109.21530 * 171.98599 * 17 15 14 19 19 C 1.42959 * 114.20081 * 297.47089 * 18 17 15 20 20 C 1.53303 * 109.21819 * 62.56695 * 19 18 17 21 21 N 1.47149 * 108.38653 * 307.69507 * 20 19 18 22 22 C 1.36929 * 120.98295 * 230.51283 * 21 20 19 23 23 H 1.07999 * 120.00225 * 145.67339 * 22 21 20 24 24 C 1.38815 * 120.00359 * 325.67489 * 22 21 20 25 25 N 1.31622 * 119.99766 * 355.34663 * 24 22 21 26 26 Si 1.86802 * 120.00370 * 175.34509 * 24 22 21 27 27 H 1.48495 * 109.47056 * 90.00047 * 26 24 22 28 28 H 1.48504 * 109.46961 * 210.00338 * 26 24 22 29 29 H 1.48504 * 109.46776 * 329.99802 * 26 24 22 30 30 H 1.08997 * 109.46763 * 299.99154 * 1 2 3 31 31 H 1.08994 * 109.47573 * 59.99596 * 1 2 3 32 32 H 1.08999 * 109.46943 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46999 * 182.24051 * 3 2 1 34 34 H 1.08999 * 109.47670 * 302.24309 * 3 2 1 35 35 H 1.09004 * 109.47139 * 62.24870 * 3 2 1 36 36 H 1.09000 * 109.47117 * 299.99874 * 4 2 1 37 37 H 1.09003 * 109.47305 * 59.99441 * 4 2 1 38 38 H 1.08999 * 109.46990 * 179.97438 * 4 2 1 39 39 H 0.96999 * 119.99699 * 264.99416 * 7 5 2 40 40 H 0.97001 * 120.00610 * 359.97438 * 9 8 7 41 41 H 0.97010 * 119.99786 * 179.97438 * 9 8 7 42 42 H 0.96999 * 120.00584 * 355.96870 * 13 11 5 43 43 H 1.09001 * 109.46826 * 299.99986 * 14 13 11 44 44 H 1.08998 * 109.46839 * 60.00181 * 14 13 11 45 45 H 1.08996 * 109.51086 * 291.95207 * 17 15 14 46 46 H 1.08997 * 109.51077 * 52.09999 * 17 15 14 47 47 H 1.08994 * 109.51749 * 302.64681 * 19 18 17 48 48 H 1.08996 * 109.55726 * 182.51160 * 19 18 17 49 49 H 1.09002 * 109.67650 * 187.97179 * 20 19 18 50 50 H 1.09004 * 109.71092 * 67.43789 * 20 19 18 51 51 H 0.96991 * 120.00166 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1229 -0.6141 1.3139 7 7 1.6940 -2.1426 1.1679 8 6 2.5023 -2.9963 0.5089 9 7 2.1868 -4.3047 0.4389 10 8 3.5161 -2.5861 -0.0224 11 6 1.4014 -0.1180 2.4735 12 8 0.5704 -0.7453 3.0955 13 7 1.7538 1.1186 2.8774 14 6 1.0704 1.7404 4.0144 15 6 1.6560 3.1319 4.2626 16 1 1.5041 3.7565 3.3823 17 6 0.9698 3.7722 5.4746 18 8 1.6469 4.9854 5.8122 19 6 3.0100 4.8062 6.2042 20 6 3.8000 4.2192 5.0288 21 7 3.0952 3.0201 4.5485 22 6 3.7590 1.8355 4.3723 23 1 3.2551 0.9001 4.5664 24 6 5.0795 1.8367 3.9444 25 7 5.6651 2.9699 3.6201 26 14 6.0254 0.2300 3.8287 27 1 5.8473 -0.3529 2.4746 28 1 7.4679 0.4863 4.0716 29 1 5.5130 -0.7205 4.8482 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1292 1.4428 -0.0402 34 1 1.6441 1.9679 -0.8692 35 1 1.7098 1.9446 0.9095 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2496 39 1 0.8852 -2.4698 1.5918 40 1 1.3781 -4.6321 0.8631 41 1 2.7684 -4.9192 -0.0356 42 1 2.4598 1.5970 2.4153 43 1 0.0063 1.8282 3.7950 44 1 1.2086 1.1239 4.9027 45 1 -0.0699 3.9904 5.2311 46 1 1.0100 3.0859 6.3204 47 1 3.0582 4.1234 7.0524 48 1 3.4380 5.7681 6.4863 49 1 4.8026 3.9479 5.3596 50 1 3.8645 4.9535 4.2259 51 1 6.5879 2.9709 3.3214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:16 Heat of formation + Delta-G solvation = -83.329152 kcal Electronic energy + Delta-G solvation = -33482.347540 eV Core-core repulsion = 29224.920037 eV Total energy + Delta-G solvation = -4257.427504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72765 -39.18590 -38.37866 -36.62431 -35.43589 -33.95076 -33.60608 -32.77550 -31.62011 -30.48680 -27.84176 -27.19285 -27.08928 -26.68490 -24.97291 -23.47231 -21.82638 -21.17791 -20.31170 -19.73486 -18.87424 -18.48530 -17.54849 -16.71270 -16.15720 -16.00102 -15.76885 -15.56078 -15.23876 -14.68878 -14.59679 -14.46768 -14.05627 -13.97213 -13.89280 -13.73045 -13.38350 -13.14648 -12.98731 -12.73894 -12.48648 -11.96745 -11.86967 -11.78383 -11.59254 -11.44696 -11.16172 -11.00616 -10.91914 -10.76548 -10.70803 -10.61697 -10.43356 -10.25226 -10.13737 -10.11550 -9.69047 -9.62989 -9.52153 -9.03611 -8.81502 -8.69940 -8.31029 -6.71025 -5.93983 -3.47900 2.81099 3.01087 3.29815 3.30981 3.38461 3.42287 3.75656 4.32748 4.50799 4.51828 4.81831 4.94858 5.03701 5.12194 5.22924 5.28162 5.53035 5.56623 5.68860 5.69513 5.80680 5.81343 5.84211 5.95732 5.97838 6.02257 6.05669 6.11796 6.13699 6.19139 6.21447 6.29942 6.32140 6.45598 6.50524 6.55361 6.59739 6.71936 6.72685 6.92101 7.01199 7.06603 7.49512 7.67727 7.85030 8.01252 8.10128 8.28846 8.66217 8.70141 9.03611 9.62134 10.22978 11.11776 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.004507 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.943770 B = 6211.189656 C = 7276.192245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.128 4.128 5 C 0.153 3.847 6 H 0.112 0.888 7 N -0.723 5.723 8 C 0.707 3.293 9 N -0.870 5.870 10 O -0.588 6.588 11 C 0.511 3.489 12 O -0.562 6.562 13 N -0.686 5.686 14 C 0.134 3.866 15 C 0.125 3.875 16 H 0.042 0.958 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.034 3.966 20 C 0.144 3.856 21 N -0.591 5.591 22 C -0.260 4.260 23 H 0.070 0.930 24 C 0.017 3.983 25 N -0.896 5.896 26 Si 0.888 3.112 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.279 1.279 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.396 0.604 41 H 0.413 0.587 42 H 0.420 0.580 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.029 0.971 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 -6.103 -5.339 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.215 4.215 4 C -0.186 4.186 5 C 0.043 3.957 6 H 0.130 0.870 7 N -0.380 5.380 8 C 0.405 3.595 9 N -0.438 5.438 10 O -0.465 6.465 11 C 0.296 3.704 12 O -0.443 6.443 13 N -0.339 5.339 14 C 0.010 3.990 15 C 0.017 3.983 16 H 0.059 0.941 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.044 4.044 20 C 0.019 3.981 21 N -0.317 5.317 22 C -0.390 4.390 23 H 0.088 0.912 24 C -0.184 4.184 25 N -0.539 5.539 26 Si 0.717 3.283 27 H -0.203 1.203 28 H -0.214 1.214 29 H -0.205 1.205 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.240 0.760 40 H 0.223 0.777 41 H 0.245 0.755 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.048 0.952 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.646 -5.782 -5.353 12.455 hybrid contribution 0.653 -1.489 0.047 1.627 sum -8.992 -7.272 -5.307 12.724 Atomic orbital electron populations 1.21874 0.94250 1.01697 1.01825 1.20846 0.95994 0.95929 0.94443 1.22135 1.02188 0.94282 1.02899 1.21878 1.02412 0.99134 0.95132 1.20746 1.01821 0.80133 0.92985 0.87012 1.44711 1.27590 1.07174 1.58528 1.15833 0.83076 0.81162 0.79420 1.42951 1.30370 1.07832 1.62664 1.90989 1.26951 1.76941 1.51642 1.20279 0.82540 0.82238 0.85331 1.90609 1.35052 1.61333 1.57261 1.46287 1.38886 1.16250 1.32498 1.21198 0.94484 0.93766 0.89540 1.21440 0.87501 0.93449 0.95865 0.94073 1.22858 0.95187 0.87170 0.97070 1.87798 1.25319 1.30331 1.87658 1.23368 0.82395 1.00110 0.98504 1.21435 0.96344 0.87960 0.92375 1.44033 1.02386 1.08733 1.76515 1.19146 0.95052 0.85143 1.39622 0.91197 1.25221 0.98556 0.96448 0.98168 1.69930 1.12748 1.24298 1.46909 0.86518 0.79544 0.83482 0.78790 1.20341 1.21357 1.20461 0.92463 0.92522 0.92762 0.91538 0.91974 0.91242 0.93175 0.93420 0.91063 0.75995 0.77694 0.75527 0.73805 0.92240 0.91412 0.89956 0.93559 0.94178 0.90272 0.88875 0.95238 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.02 37.16 0.30 -1.43 16 2 C -0.07 -0.98 0.63 -154.51 -0.10 -1.07 16 3 C -0.16 -2.21 7.79 37.16 0.29 -1.92 16 4 C -0.13 -1.78 6.96 37.16 0.26 -1.52 16 5 C 0.15 2.47 1.98 -69.08 -0.14 2.33 16 6 H 0.11 2.13 7.57 -51.93 -0.39 1.73 16 7 N -0.72 -10.24 4.31 -59.81 -0.26 -10.50 16 8 C 0.71 10.22 6.99 -86.92 -0.61 9.61 16 9 N -0.87 -8.27 8.88 27.63 0.25 -8.02 16 10 O -0.59 -10.84 14.33 5.29 0.08 -10.76 16 11 C 0.51 8.95 5.41 -10.99 -0.06 8.89 16 12 O -0.56 -10.61 15.84 5.56 0.09 -10.52 16 13 N -0.69 -12.29 2.60 -60.29 -0.16 -12.45 16 14 C 0.13 2.36 4.46 -4.04 -0.02 2.34 16 15 C 0.12 2.34 3.22 -67.42 -0.22 2.12 16 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.06 0.96 6.29 37.31 0.23 1.20 16 18 O -0.39 -7.46 10.74 -35.23 -0.38 -7.84 16 19 C 0.03 0.65 6.99 37.31 0.26 0.91 16 20 C 0.14 3.21 5.35 -3.53 -0.02 3.19 16 21 N -0.59 -13.21 3.03 -164.30 -0.50 -13.71 16 22 C -0.26 -6.32 6.85 -15.06 -0.10 -6.42 16 23 H 0.07 1.75 5.96 -52.49 -0.31 1.44 16 24 C 0.02 0.42 5.17 -17.43 -0.09 0.33 16 25 N -0.90 -23.79 11.04 55.49 0.61 -23.18 16 26 Si 0.89 21.11 29.56 -169.99 -5.02 16.09 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.06 0.77 7.02 -51.93 -0.36 0.41 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.65 7.82 -51.93 -0.41 0.24 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.03 5.17 -51.93 -0.27 0.76 16 36 H 0.05 0.69 6.00 -51.93 -0.31 0.38 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.14 7.05 -51.93 -0.37 0.78 16 39 H 0.40 5.15 7.73 -40.82 -0.32 4.84 16 40 H 0.40 2.61 8.84 -40.82 -0.36 2.25 16 41 H 0.41 3.37 8.93 -40.82 -0.36 3.00 16 42 H 0.42 8.07 5.18 -40.82 -0.21 7.86 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.30 7.61 -51.93 -0.40 0.91 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.09 2.29 6.38 -51.93 -0.33 1.96 16 50 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -30.30 386.86 -7.65 -37.95 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -8.19 Total: 18.56 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -0.01 Total: 18.54 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.05 Total: -67.86 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.21 Total: -29.12 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.30 -7.65 -37.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.375 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds