Wall clock time and date at job start Wed Apr 1 2020 01:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46761 * 2 1 4 4 C 1.53003 * 109.46989 * 240.00579 * 2 1 3 5 5 C 1.53000 * 109.47456 * 120.00484 * 2 1 3 6 6 H 1.09002 * 109.47023 * 186.99922 * 5 2 1 7 7 N 1.46502 * 109.46973 * 66.99730 * 5 2 1 8 8 C 1.34772 * 119.99801 * 85.27907 * 7 5 2 9 9 N 1.34774 * 119.99580 * 179.72279 * 8 7 5 10 10 O 1.21589 * 120.00185 * 359.71906 * 8 7 5 11 11 C 1.50701 * 109.46775 * 306.99921 * 5 2 1 12 12 O 1.21280 * 120.00169 * 109.12363 * 11 5 2 13 13 N 1.34777 * 119.99759 * 289.11620 * 11 5 2 14 14 C 1.46508 * 119.99946 * 175.96668 * 13 11 5 15 15 C 1.53000 * 109.47121 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.68016 * 60.96478 * 15 14 13 17 17 C 1.53294 * 109.68155 * 181.48411 * 15 14 13 18 18 O 1.42974 * 109.21530 * 171.98599 * 17 15 14 19 19 C 1.42959 * 114.20081 * 297.47089 * 18 17 15 20 20 C 1.53303 * 109.21819 * 62.56695 * 19 18 17 21 21 N 1.47149 * 108.38653 * 307.69507 * 20 19 18 22 22 C 1.36929 * 120.98295 * 230.51283 * 21 20 19 23 23 H 1.07999 * 120.00225 * 145.67339 * 22 21 20 24 24 C 1.38815 * 120.00359 * 325.67489 * 22 21 20 25 25 N 1.31622 * 119.99766 * 355.34663 * 24 22 21 26 26 Si 1.86802 * 120.00370 * 175.34509 * 24 22 21 27 27 H 1.48495 * 109.47056 * 90.00047 * 26 24 22 28 28 H 1.48504 * 109.46961 * 210.00338 * 26 24 22 29 29 H 1.48504 * 109.46776 * 329.99802 * 26 24 22 30 30 H 1.08997 * 109.46763 * 299.99154 * 1 2 3 31 31 H 1.08994 * 109.47573 * 59.99596 * 1 2 3 32 32 H 1.08999 * 109.46943 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46999 * 182.24051 * 3 2 1 34 34 H 1.08999 * 109.47670 * 302.24309 * 3 2 1 35 35 H 1.09004 * 109.47139 * 62.24870 * 3 2 1 36 36 H 1.09000 * 109.47117 * 299.99874 * 4 2 1 37 37 H 1.09003 * 109.47305 * 59.99441 * 4 2 1 38 38 H 1.08999 * 109.46990 * 179.97438 * 4 2 1 39 39 H 0.96999 * 119.99699 * 264.99416 * 7 5 2 40 40 H 0.97001 * 120.00610 * 359.97438 * 9 8 7 41 41 H 0.97010 * 119.99786 * 179.97438 * 9 8 7 42 42 H 0.96999 * 120.00584 * 355.96870 * 13 11 5 43 43 H 1.09001 * 109.46826 * 299.99986 * 14 13 11 44 44 H 1.08998 * 109.46839 * 60.00181 * 14 13 11 45 45 H 1.08996 * 109.51086 * 291.95207 * 17 15 14 46 46 H 1.08997 * 109.51077 * 52.09999 * 17 15 14 47 47 H 1.08994 * 109.51749 * 302.64681 * 19 18 17 48 48 H 1.08996 * 109.55726 * 182.51160 * 19 18 17 49 49 H 1.09002 * 109.67650 * 187.97179 * 20 19 18 50 50 H 1.09004 * 109.71092 * 67.43789 * 20 19 18 51 51 H 0.96991 * 120.00166 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1229 -0.6141 1.3139 7 7 1.6940 -2.1426 1.1679 8 6 2.5023 -2.9963 0.5089 9 7 2.1868 -4.3047 0.4389 10 8 3.5161 -2.5861 -0.0224 11 6 1.4014 -0.1180 2.4735 12 8 0.5704 -0.7453 3.0955 13 7 1.7538 1.1186 2.8774 14 6 1.0704 1.7404 4.0144 15 6 1.6560 3.1319 4.2626 16 1 1.5041 3.7565 3.3823 17 6 0.9698 3.7722 5.4746 18 8 1.6469 4.9854 5.8122 19 6 3.0100 4.8062 6.2042 20 6 3.8000 4.2192 5.0288 21 7 3.0952 3.0201 4.5485 22 6 3.7590 1.8355 4.3723 23 1 3.2551 0.9001 4.5664 24 6 5.0795 1.8367 3.9444 25 7 5.6651 2.9699 3.6201 26 14 6.0254 0.2300 3.8287 27 1 5.8473 -0.3529 2.4746 28 1 7.4679 0.4863 4.0716 29 1 5.5130 -0.7205 4.8482 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1292 1.4428 -0.0402 34 1 1.6441 1.9679 -0.8692 35 1 1.7098 1.9446 0.9095 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2496 39 1 0.8852 -2.4698 1.5918 40 1 1.3781 -4.6321 0.8631 41 1 2.7684 -4.9192 -0.0356 42 1 2.4598 1.5970 2.4153 43 1 0.0063 1.8282 3.7950 44 1 1.2086 1.1239 4.9027 45 1 -0.0699 3.9904 5.2311 46 1 1.0100 3.0859 6.3204 47 1 3.0582 4.1234 7.0524 48 1 3.4380 5.7681 6.4863 49 1 4.8026 3.9479 5.3596 50 1 3.8645 4.9535 4.2259 51 1 6.5879 2.9709 3.3214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:15 Heat of formation + Delta-G solvation = -107.057966 kcal Electronic energy + Delta-G solvation = -33483.376499 eV Core-core repulsion = 29224.920037 eV Total energy + Delta-G solvation = -4258.456462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99769 -40.55026 -39.85187 -37.85463 -36.98453 -35.43241 -34.97033 -33.86331 -33.28283 -32.15775 -29.26677 -28.73043 -28.21742 -27.85691 -26.41388 -25.22451 -23.38791 -22.31905 -21.68836 -21.37756 -20.10242 -19.66424 -18.80138 -18.27296 -17.66221 -17.41778 -17.07724 -16.96678 -16.57348 -16.26481 -16.09371 -15.83899 -15.57062 -15.35772 -15.20594 -15.09020 -14.82984 -14.54387 -14.42984 -14.27730 -13.84781 -13.44289 -13.11672 -13.04879 -12.93388 -12.84214 -12.78152 -12.57501 -12.51651 -12.28208 -12.17784 -11.97745 -11.90307 -11.87380 -11.74170 -11.39054 -11.29325 -10.94933 -10.66368 -10.60823 -10.57989 -10.01410 -9.82892 -8.57171 -7.90549 -5.43671 1.34635 1.43005 1.43887 1.54465 1.71734 2.14165 2.37296 2.45602 3.05924 3.26585 3.45412 3.53946 3.62984 3.73400 3.87298 4.03155 4.09051 4.25174 4.32713 4.36833 4.49545 4.50452 4.62191 4.67525 4.68772 4.73004 4.76840 4.78475 4.86974 4.97896 5.00019 5.03441 5.10652 5.14767 5.22496 5.31354 5.33634 5.39841 5.47158 5.52975 5.67025 5.67702 5.85122 6.02688 6.31792 6.39041 6.60887 7.04331 7.10412 7.20587 7.63784 7.74992 8.32166 9.12896 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.004507 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.943770 B = 6211.189656 C = 7276.192245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.154 4.154 4 C -0.119 4.119 5 C 0.156 3.844 6 H 0.077 0.923 7 N -0.717 5.717 8 C 0.702 3.298 9 N -0.845 5.845 10 O -0.631 6.631 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.690 5.690 14 C 0.140 3.860 15 C 0.125 3.875 16 H 0.040 0.960 17 C 0.058 3.942 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.149 3.851 21 N -0.604 5.604 22 C -0.238 4.238 23 H 0.065 0.935 24 C -0.021 4.021 25 N -0.919 5.919 26 Si 0.928 3.072 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.413 0.587 40 H 0.413 0.587 41 H 0.422 0.578 42 H 0.414 0.586 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.120 0.880 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.008 0.992 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -6.511 -5.373 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.067 4.067 3 C -0.212 4.212 4 C -0.176 4.176 5 C 0.046 3.954 6 H 0.095 0.905 7 N -0.375 5.375 8 C 0.400 3.600 9 N -0.415 5.415 10 O -0.512 6.512 11 C 0.301 3.699 12 O -0.455 6.455 13 N -0.342 5.342 14 C 0.016 3.984 15 C 0.019 3.981 16 H 0.058 0.942 17 C -0.021 4.021 18 O -0.316 6.316 19 C -0.031 4.031 20 C 0.023 3.977 21 N -0.331 5.331 22 C -0.368 4.368 23 H 0.082 0.918 24 C -0.219 4.219 25 N -0.565 5.565 26 Si 0.759 3.241 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.250 0.750 40 H 0.244 0.756 41 H 0.256 0.744 42 H 0.254 0.746 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.121 0.879 49 H 0.084 0.916 50 H 0.026 0.974 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.367 -6.240 -5.359 14.852 hybrid contribution 1.418 -1.408 0.066 1.999 sum -10.949 -7.647 -5.293 14.366 Atomic orbital electron populations 1.21807 0.92392 1.02339 1.02320 1.20824 0.97280 0.95312 0.93257 1.22107 1.00914 0.94728 1.03465 1.21764 1.00558 0.99423 0.95871 1.20609 0.99671 0.81562 0.93584 0.90512 1.44583 1.27851 1.06452 1.58620 1.16042 0.82507 0.82358 0.79130 1.42710 1.30961 1.06029 1.61801 1.90973 1.28799 1.77995 1.53432 1.20428 0.82230 0.81872 0.85406 1.90595 1.35692 1.61488 1.57681 1.46322 1.38758 1.16527 1.32584 1.21200 0.95889 0.92556 0.88802 1.21594 0.85326 0.94416 0.96801 0.94215 1.22999 0.96539 0.86541 0.96014 1.87803 1.24935 1.31281 1.87562 1.23207 0.82171 1.01145 0.96621 1.21253 0.95869 0.87522 0.93013 1.44225 1.03997 1.08073 1.76759 1.19133 0.94691 0.85749 1.37275 0.91763 1.25557 0.99498 0.97464 0.99340 1.70022 1.12523 1.25077 1.48834 0.85890 0.78659 0.81868 0.77725 1.21700 1.21816 1.20702 0.93392 0.90524 0.92058 0.93627 0.89786 0.92023 0.93156 0.91355 0.93865 0.74957 0.75625 0.74425 0.74616 0.89369 0.92997 0.86244 0.93345 0.93945 0.87912 0.91649 0.97428 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.02 71.98 0.58 -2.38 16 2 C -0.06 -1.75 0.63 -52.18 -0.03 -1.79 16 3 C -0.15 -4.29 7.79 71.98 0.56 -3.73 16 4 C -0.12 -3.21 6.96 71.98 0.50 -2.71 16 5 C 0.16 5.05 1.98 44.25 0.09 5.14 16 6 H 0.08 3.07 7.57 -2.39 -0.02 3.05 16 7 N -0.72 -19.81 4.31 -461.41 -1.99 -21.80 16 8 C 0.70 19.87 6.99 179.06 1.25 21.12 16 9 N -0.85 -14.63 8.88 -184.75 -1.64 -16.27 16 10 O -0.63 -23.66 14.33 -4.00 -0.06 -23.71 16 11 C 0.52 17.75 5.41 87.66 0.47 18.22 16 12 O -0.57 -20.86 15.84 -3.03 -0.05 -20.90 16 13 N -0.69 -24.46 2.60 -463.04 -1.20 -25.66 16 14 C 0.14 4.67 4.46 86.38 0.39 5.06 16 15 C 0.12 4.49 3.22 44.97 0.14 4.64 16 16 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 17 C 0.06 1.80 6.29 72.08 0.45 2.25 16 18 O -0.40 -14.07 10.74 -148.98 -1.60 -15.67 16 19 C 0.05 1.68 6.99 72.08 0.50 2.19 16 20 C 0.15 6.66 5.35 86.36 0.46 7.12 16 21 N -0.60 -26.95 3.03 -673.71 -2.04 -28.99 16 22 C -0.24 -11.68 6.85 84.04 0.58 -11.10 16 23 H 0.06 3.23 5.96 -2.91 -0.02 3.22 16 24 C -0.02 -1.10 5.17 84.86 0.44 -0.66 16 25 N -0.92 -50.31 11.04 21.65 0.24 -50.07 16 26 Si 0.93 44.78 29.56 68.60 2.03 46.81 16 27 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 29 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 30 H 0.05 1.18 7.02 -2.39 -0.02 1.16 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.29 7.82 -2.39 -0.02 1.28 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.81 5.17 -2.38 -0.01 1.79 16 36 H 0.05 1.34 6.00 -2.39 -0.01 1.32 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 1.41 7.05 -2.39 -0.02 1.40 16 39 H 0.41 9.89 7.73 -92.71 -0.72 9.17 16 40 H 0.41 4.44 8.84 -92.71 -0.82 3.62 16 41 H 0.42 6.16 8.93 -92.70 -0.83 5.34 16 42 H 0.41 16.10 5.18 -92.71 -0.48 15.62 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 45 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.07 3.29 6.38 -2.39 -0.02 3.27 16 50 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 51 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -66.55 386.86 -1.78 -68.33 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -1.86 Total: 44.57 kcal Atomic # 6 Polarization: 37.00 SS G_CDS: 6.38 Total: 43.38 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -6.63 Total: -142.80 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -1.71 Total: -60.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.55 -1.78 -68.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.731 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds