Wall clock time and date at job start Wed Apr 1 2020 01:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46742 * 2 1 4 4 C 1.53006 * 109.46742 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46943 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47027 * 54.99707 * 5 4 3 7 7 N 1.46504 * 109.46836 * 295.00309 * 5 4 3 8 8 C 1.34779 * 119.99854 * 299.99713 * 7 5 4 9 9 N 1.34774 * 119.99959 * 180.02562 * 8 7 5 10 10 O 1.21584 * 119.99973 * 0.02562 * 8 7 5 11 11 C 1.50698 * 109.47311 * 175.00379 * 5 4 3 12 12 O 1.21276 * 120.00080 * 99.99593 * 11 5 4 13 13 N 1.34784 * 119.99322 * 280.00023 * 11 5 4 14 14 C 1.46500 * 119.99254 * 185.14991 * 13 11 5 15 15 C 1.53004 * 113.28560 * 53.19089 * 14 13 11 16 16 C 1.53000 * 109.46928 * 67.77185 * 15 14 13 17 17 O 1.42895 * 109.47121 * 185.00218 * 16 15 14 18 18 C 1.53501 * 114.20489 * 186.25734 * 14 13 11 19 19 N 1.47068 * 87.98361 * 87.71772 * 18 14 13 20 20 C 1.36936 * 136.05425 * 207.08657 * 19 18 14 21 21 H 1.08000 * 120.00134 * 5.47772 * 20 19 18 22 22 C 1.38811 * 119.99891 * 185.47595 * 20 19 18 23 23 N 1.31614 * 120.00354 * 24.43648 * 22 20 19 24 24 Si 1.86800 * 119.99940 * 204.16282 * 22 20 19 25 25 H 1.48502 * 109.47142 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47227 * 119.99728 * 24 22 20 27 27 H 1.48497 * 109.47147 * 239.99834 * 24 22 20 28 28 C 1.47068 * 87.88679 * 27.34356 * 19 18 14 29 29 H 1.08992 * 109.47547 * 59.99873 * 1 2 3 30 30 H 1.09001 * 109.46518 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47181 * 299.99397 * 1 2 3 32 32 H 1.09004 * 109.47107 * 240.00595 * 2 1 3 33 33 H 1.09000 * 109.47394 * 120.00398 * 2 1 3 34 34 H 1.09002 * 109.47096 * 60.00905 * 3 2 1 35 35 H 1.08996 * 109.47814 * 299.99949 * 3 2 1 36 36 H 1.08994 * 109.47181 * 60.00603 * 4 3 2 37 37 H 1.08996 * 109.47365 * 299.99649 * 4 3 2 38 38 H 0.97001 * 120.00086 * 120.00215 * 7 5 4 39 39 H 0.97001 * 119.99981 * 0.02562 * 9 8 7 40 40 H 0.96997 * 119.99917 * 179.97438 * 9 8 7 41 41 H 0.96993 * 120.00249 * 5.15089 * 13 11 5 42 42 H 1.08997 * 109.47134 * 187.76901 * 15 14 13 43 43 H 1.08999 * 109.47130 * 307.76917 * 15 14 13 44 44 H 1.09003 * 109.47085 * 305.00396 * 16 15 14 45 45 H 1.09001 * 109.47341 * 65.00375 * 16 15 14 46 46 H 0.96700 * 114.00559 * 179.97438 * 17 16 15 47 47 H 1.08997 * 113.46533 * 332.93512 * 18 14 13 48 48 H 1.08997 * 113.52001 * 202.50709 * 18 14 13 49 49 H 0.97001 * 119.99470 * 5.11614 * 23 22 20 50 50 H 1.08998 * 113.46412 * 87.44106 * 28 19 18 51 51 H 1.08999 * 113.46567 * 217.88081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0013 6 1 3.6449 3.4239 0.8431 7 7 3.6928 3.5404 -1.2505 8 6 4.1179 3.0453 -2.4298 9 7 3.7621 3.6484 -3.5814 10 8 4.8222 2.0546 -2.4548 11 6 5.5818 2.8869 0.1257 12 8 6.2717 3.0402 -0.8599 13 7 6.1582 2.7182 1.3323 14 6 7.6121 2.8323 1.4718 15 6 8.1728 4.1403 0.9100 16 6 7.6962 5.3112 1.7719 17 8 8.1223 6.5411 1.1821 18 6 8.1410 2.4682 2.8661 19 7 8.2189 1.0707 2.4146 20 6 8.1591 -0.1620 3.0081 21 1 7.9339 -0.2440 4.0611 22 6 8.3880 -1.3061 2.2562 23 7 9.1076 -1.2378 1.1563 24 14 7.6812 -2.9443 2.8095 25 1 6.9220 -2.7549 4.0716 26 1 6.7732 -3.4717 1.7594 27 1 8.7870 -3.9088 3.0377 28 6 8.3956 1.5796 1.0462 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9287 -0.8891 37 1 3.9330 0.9289 0.8908 38 1 3.1306 4.3306 -1.2306 39 1 3.2005 4.4390 -3.5614 40 1 4.0683 3.2923 -4.4301 41 1 5.6105 2.5212 2.1081 42 1 9.2620 4.1023 0.9191 43 1 7.8225 4.2760 -0.1132 44 1 6.6081 5.2964 1.8353 45 1 8.1197 5.2221 2.7723 46 1 7.8543 7.3279 1.6762 47 1 7.4132 2.6274 3.6616 48 1 9.1133 2.9066 3.0906 49 1 9.5395 -0.4048 0.9103 50 1 9.4352 1.7841 0.7900 51 1 7.8846 0.9819 0.2914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755344496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:57 Heat of formation + Delta-G solvation = -103.037749 kcal Electronic energy + Delta-G solvation = -32509.442335 eV Core-core repulsion = 28251.160202 eV Total energy + Delta-G solvation = -4258.282133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90178 -40.88588 -39.13620 -37.76042 -37.13511 -35.35337 -35.16729 -34.40626 -33.80008 -32.20251 -31.21685 -28.88243 -27.72423 -26.76608 -25.16929 -23.86177 -23.12771 -22.84212 -21.84924 -20.99964 -20.30150 -19.52069 -19.46700 -18.49171 -18.22861 -17.69358 -16.82707 -16.65138 -16.25310 -16.18054 -15.93578 -15.83273 -15.61588 -15.49517 -15.29629 -15.11425 -14.95282 -14.71105 -14.67058 -14.15031 -13.87805 -13.51080 -13.35505 -13.06988 -12.82149 -12.72705 -12.69795 -12.59634 -12.20940 -12.13055 -11.99147 -11.87423 -11.76645 -11.58905 -11.47108 -11.37565 -11.16534 -10.90013 -10.75432 -10.66991 -10.43997 -9.96777 -9.79898 -9.14134 -8.42930 -5.34227 1.52022 1.63664 1.69586 1.76060 1.86810 2.26765 2.53238 2.57965 3.02768 3.22983 3.29003 3.55418 3.67649 3.73267 3.90631 4.00142 4.08442 4.16580 4.24396 4.28127 4.35051 4.40315 4.43734 4.54259 4.55524 4.62398 4.69531 4.81391 4.83159 4.87261 4.89269 5.00742 5.03526 5.04112 5.17787 5.24256 5.30125 5.33258 5.39726 5.51160 5.54174 5.71759 6.01280 6.09500 6.11746 6.61737 6.70487 6.95018 7.25326 7.43843 7.58588 7.90349 8.41062 9.00887 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007076 B = 0.005042 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3955.851335 B = 5551.498340 C = 8135.421285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C -0.095 4.095 4 C -0.133 4.133 5 C 0.166 3.834 6 H 0.162 0.838 7 N -0.714 5.714 8 C 0.698 3.302 9 N -0.854 5.854 10 O -0.621 6.621 11 C 0.490 3.510 12 O -0.547 6.547 13 N -0.687 5.687 14 C 0.165 3.835 15 C -0.111 4.111 16 C 0.095 3.905 17 O -0.594 6.594 18 C 0.128 3.872 19 N -0.635 5.635 20 C -0.317 4.317 21 H 0.087 0.913 22 C -0.093 4.093 23 N -0.964 5.964 24 Si 1.124 2.876 25 H -0.255 1.255 26 H -0.298 1.298 27 H -0.292 1.292 28 C 0.129 3.871 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.420 0.580 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.398 0.602 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.247 0.753 50 H 0.015 0.985 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 18.123 1.458 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.172 4.172 5 C 0.056 3.944 6 H 0.179 0.821 7 N -0.372 5.372 8 C 0.396 3.604 9 N -0.423 5.423 10 O -0.500 6.500 11 C 0.276 3.724 12 O -0.422 6.422 13 N -0.341 5.341 14 C 0.076 3.924 15 C -0.150 4.150 16 C 0.018 3.982 17 O -0.403 6.403 18 C 0.003 3.997 19 N -0.362 5.362 20 C -0.445 4.445 21 H 0.105 0.895 22 C -0.286 4.286 23 N -0.609 5.609 24 Si 0.948 3.052 25 H -0.179 1.179 26 H -0.226 1.226 27 H -0.220 1.220 28 C 0.001 3.999 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.258 0.742 39 H 0.243 0.757 40 H 0.246 0.754 41 H 0.249 0.751 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.248 0.752 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.033 0.967 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -20.049 15.198 0.231 25.160 hybrid contribution 0.641 1.679 0.101 1.800 sum -19.409 16.877 0.332 25.723 Atomic orbital electron populations 1.21709 0.94078 1.01849 1.02473 1.21560 0.97198 0.97277 1.00975 1.21453 0.91696 0.96777 1.03348 1.21930 0.98212 0.94588 1.02450 1.20759 0.88915 0.96250 0.88469 0.82097 1.44422 1.56229 1.33694 1.02904 1.16244 0.79258 0.82791 0.82057 1.42746 1.58404 1.34552 1.06622 1.91018 1.42533 1.29745 1.86703 1.21723 0.92409 0.75898 0.82420 1.90718 1.65516 1.48474 1.37508 1.45318 1.05532 1.72425 1.10776 1.21252 0.81737 0.92096 0.97323 1.21500 1.00276 0.92297 1.00946 1.21948 0.98487 0.82658 0.95136 1.86451 1.81366 1.16827 1.55657 1.22779 0.99054 0.83719 0.94183 1.46237 1.84940 1.01211 1.03802 1.20128 1.45353 0.82905 0.96077 0.89520 1.27258 0.99097 1.05367 0.96889 1.70827 1.32130 1.28403 1.29525 0.82769 0.75570 0.71208 0.75639 1.17854 1.22580 1.21961 1.22556 0.95466 0.93085 0.88775 0.92420 0.92974 0.91262 0.94544 0.92510 0.88885 0.91495 0.93611 0.91595 0.74204 0.75707 0.75410 0.75098 0.91921 0.91807 0.92245 0.91771 0.75194 0.90077 0.92736 0.94291 0.96692 0.98022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.76 5.93 30.60 0.18 -2.58 16 3 C -0.10 -1.73 5.10 30.60 0.16 -1.58 16 4 C -0.13 -3.58 4.54 30.60 0.14 -3.44 16 5 C 0.17 3.80 3.01 44.25 0.13 3.93 16 6 H 0.16 1.87 8.14 -2.38 -0.02 1.85 16 7 N -0.71 -14.30 4.66 -461.39 -2.15 -16.45 16 8 C 0.70 20.07 7.59 179.05 1.36 21.43 16 9 N -0.85 -15.61 8.88 -184.75 -1.64 -17.25 16 10 O -0.62 -26.92 13.03 18.48 0.24 -26.68 16 11 C 0.49 16.86 6.53 87.66 0.57 17.43 16 12 O -0.55 -24.62 11.72 19.44 0.23 -24.39 16 13 N -0.69 -22.37 5.07 -421.94 -2.14 -24.51 16 14 C 0.17 6.30 0.69 4.17 0.00 6.30 16 15 C -0.11 -3.86 4.92 30.60 0.15 -3.71 16 16 C 0.10 2.32 6.81 71.98 0.49 2.81 16 17 O -0.59 -14.29 13.66 -148.98 -2.03 -16.33 16 18 C 0.13 4.86 7.40 83.19 0.62 5.48 16 19 N -0.63 -33.05 3.69 -737.78 -2.72 -35.77 16 20 C -0.32 -18.21 10.59 84.03 0.89 -17.32 16 21 H 0.09 4.68 7.94 -2.91 -0.02 4.65 16 22 C -0.09 -5.66 5.41 84.86 0.46 -5.20 16 23 N -0.96 -65.53 13.30 21.65 0.29 -65.24 16 24 Si 1.12 53.91 29.98 68.60 2.06 55.96 16 25 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 C 0.13 6.80 5.66 83.27 0.47 7.28 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.05 1.74 6.04 -2.39 -0.01 1.73 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.42 4.20 8.84 -92.71 -0.82 3.38 16 39 H 0.41 3.73 8.84 -92.71 -0.82 2.91 16 40 H 0.41 7.61 8.93 -92.71 -0.83 6.78 16 41 H 0.41 10.86 8.67 -92.71 -0.80 10.06 16 42 H 0.06 2.29 7.99 -2.39 -0.02 2.28 16 43 H 0.06 2.63 6.03 -2.39 -0.01 2.61 16 44 H 0.06 1.24 7.91 -2.39 -0.02 1.22 16 45 H 0.06 1.33 7.81 -2.39 -0.02 1.31 16 46 H 0.40 4.90 9.12 -74.06 -0.68 4.22 16 47 H 0.08 2.54 8.13 -2.39 -0.02 2.53 16 48 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 49 H 0.25 17.27 6.32 -92.71 -0.59 16.68 16 50 H 0.02 0.86 7.89 -2.39 -0.02 0.84 16 51 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 Total: -1.00 -100.10 408.93 -4.31 -104.40 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -2.77 Total: 36.91 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 6.34 Total: 29.34 kcal Atomic # 7 Polarization: -150.85 SS G_CDS: -8.36 Total: -159.21 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.57 Total: -67.40 kcal Atomic # 14 Polarization: 53.91 SS G_CDS: 2.06 Total: 55.96 kcal Total: -100.10 -4.31 -104.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755344496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.365 kcal (2) G-P(sol) polarization free energy of solvation -100.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds