Wall clock time and date at job start Wed Apr 1 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 C 1.53000 * 109.47326 * 120.00364 * 2 1 3 5 5 H 1.08997 * 109.46867 * 54.74182 * 4 2 1 6 6 F 1.39898 * 109.46784 * 294.74097 * 4 2 1 7 7 C 1.50700 * 109.46835 * 174.74148 * 4 2 1 8 8 O 1.21288 * 119.99841 * 101.18477 * 7 4 2 9 9 N 1.34772 * 120.00535 * 281.18444 * 7 4 2 10 10 C 1.46940 * 120.56741 * 355.17596 * 9 7 4 11 11 C 1.53291 * 108.71085 * 125.88038 * 10 9 7 12 12 C 1.52435 * 109.38896 * 53.72578 * 11 10 9 13 13 C 1.53591 * 110.46200 * 177.14998 * 12 11 10 14 14 O 1.43886 * 107.11515 * 239.50306 * 13 12 11 15 15 C 1.44436 * 106.99710 * 26.36597 * 14 13 12 16 16 H 1.09001 * 110.73325 * 78.83078 * 15 14 13 17 17 C 1.52996 * 110.61064 * 201.73624 * 15 14 13 18 18 N 1.46501 * 109.46978 * 294.13696 * 17 15 14 19 19 C 1.36942 * 119.99805 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00013 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99820 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99626 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47304 * 90.00196 * 23 21 19 25 25 H 1.48503 * 109.46901 * 209.99842 * 23 21 19 26 26 H 1.48501 * 109.47661 * 330.00005 * 23 21 19 27 27 C 1.54319 * 110.02393 * 62.06436 * 12 11 10 28 28 C 1.52428 * 110.96978 * 300.03959 * 12 11 10 29 29 C 1.46921 * 120.57696 * 175.19770 * 9 7 4 30 30 H 1.09005 * 109.46766 * 299.99166 * 1 2 3 31 31 H 1.08995 * 109.47796 * 59.99348 * 1 2 3 32 32 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46977 * 240.00650 * 2 1 3 34 34 H 1.09005 * 109.47157 * 176.07406 * 3 2 1 35 35 H 1.09002 * 109.47451 * 296.07193 * 3 2 1 36 36 H 1.09005 * 109.47180 * 56.07558 * 3 2 1 37 37 H 1.09000 * 109.59514 * 6.11392 * 10 9 7 38 38 H 1.08996 * 109.72461 * 245.72582 * 10 9 7 39 39 H 1.09000 * 109.48940 * 293.75217 * 11 10 9 40 40 H 1.09000 * 109.48449 * 173.70253 * 11 10 9 41 41 H 1.08993 * 109.91061 * 358.87828 * 13 12 11 42 42 H 1.09000 * 109.90428 * 119.94927 * 13 12 11 43 43 H 1.09003 * 109.47111 * 54.13170 * 17 15 14 44 44 H 1.08999 * 109.47306 * 174.13709 * 17 15 14 45 45 H 0.97000 * 120.00371 * 0.02562 * 18 17 15 46 46 H 0.96994 * 119.99576 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.93411 * 339.89043 * 27 12 11 48 48 H 1.09005 * 110.95924 * 216.24690 * 27 12 11 49 49 H 1.08994 * 109.48270 * 179.91863 * 28 12 11 50 50 H 1.08997 * 109.48503 * 299.96820 * 28 12 11 51 51 H 1.09001 * 109.59208 * 353.88177 * 29 9 7 52 52 H 1.08999 * 109.59245 * 114.33496 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6019 -1.7182 1.2974 6 9 1.6750 0.0042 2.3883 7 6 3.5414 -0.8350 1.1857 8 8 4.2349 -0.0729 1.8255 9 7 4.1136 -1.7835 0.4180 10 6 3.2879 -2.7795 -0.2787 11 6 3.6421 -2.7554 -1.7699 12 6 5.1465 -2.9372 -1.9358 13 6 5.5203 -2.9878 -3.4247 14 8 6.1534 -4.2584 -3.6593 15 6 5.6457 -5.1734 -2.6637 16 1 4.6534 -5.5310 -2.9385 17 6 6.6062 -6.3489 -2.4728 18 7 6.6514 -7.1468 -3.7007 19 6 7.4497 -8.2575 -3.7664 20 1 8.0457 -8.5455 -2.9129 21 6 7.4930 -9.0133 -4.9299 22 7 6.7663 -8.6627 -5.9698 23 14 8.5814 -10.5288 -5.0193 24 1 7.8125 -11.7176 -4.5710 25 1 9.0341 -10.7311 -6.4190 26 1 9.7627 -10.3425 -4.1389 27 6 5.5776 -4.3096 -1.3773 28 6 5.9115 -1.8228 -1.2313 29 6 5.5736 -1.8399 0.2638 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1277 1.4433 0.0704 35 1 1.7352 1.9357 -0.9231 36 1 1.6203 1.9763 0.8528 37 1 2.2336 -2.5353 -0.1493 38 1 3.4861 -3.7711 0.1281 39 1 3.3419 -1.7997 -2.1996 40 1 3.1196 -3.5641 -2.2808 41 1 4.6220 -2.9022 -4.0360 42 1 6.2092 -2.1772 -3.6621 43 1 7.6036 -5.9704 -2.2486 44 1 6.2596 -6.9711 -1.6477 45 1 6.1165 -6.8880 -4.4673 46 1 6.7969 -9.1906 -6.7829 47 1 4.8318 -4.7001 -0.6850 48 1 6.5549 -4.2463 -0.8986 49 1 6.9824 -1.9770 -1.3638 50 1 5.6270 -0.8608 -1.6574 51 1 6.0262 -0.9761 0.7507 52 1 5.9536 -2.7569 0.7141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755464096.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:06 Heat of formation + Delta-G solvation = -150.062725 kcal Electronic energy + Delta-G solvation = -31633.152664 eV Core-core repulsion = 27352.911413 eV Total energy + Delta-G solvation = -4280.241250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.90819 -41.92349 -40.48042 -37.97277 -36.63252 -36.37379 -34.37370 -33.49865 -32.41410 -30.98199 -29.49263 -28.15800 -27.85449 -27.03419 -24.59812 -24.42318 -24.10839 -22.13579 -21.87615 -21.02653 -19.31438 -19.17049 -18.70586 -17.83431 -17.45798 -17.18105 -16.63944 -16.57897 -16.47961 -15.95625 -15.80155 -15.62749 -15.24372 -15.07016 -14.88593 -14.70413 -14.65305 -14.32273 -14.03361 -13.94608 -13.71796 -13.52177 -13.36676 -13.16803 -13.12405 -13.01453 -12.95270 -12.75716 -12.47520 -12.25732 -12.20930 -12.17427 -12.01713 -11.94208 -11.87441 -11.70266 -11.50802 -11.39076 -11.27091 -10.96484 -10.70394 -10.48484 -9.75493 -8.99214 -7.93739 -5.22837 1.31830 1.47300 1.49738 1.58134 1.74057 2.56404 3.00198 3.12454 3.36773 3.39822 3.41558 3.56395 3.63492 3.67363 3.75719 3.91005 4.02907 4.05913 4.16106 4.22766 4.27947 4.31743 4.34887 4.46541 4.48480 4.52389 4.56804 4.65700 4.67406 4.75477 4.79166 4.81216 4.86410 4.86602 4.94739 4.97701 4.99860 5.02871 5.05398 5.09075 5.20064 5.27422 5.29251 5.34132 5.39306 5.47753 5.49134 6.14138 6.20544 6.28321 6.92890 7.34049 8.10575 8.33734 9.30064 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.002131 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.023670 B =13134.602744 C =13325.099362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.151 4.151 4 C 0.077 3.923 5 H 0.140 0.860 6 F -0.203 7.203 7 C 0.491 3.509 8 O -0.573 6.573 9 N -0.596 5.596 10 C 0.094 3.906 11 C -0.119 4.119 12 C -0.079 4.079 13 C 0.049 3.951 14 O -0.399 6.399 15 C 0.077 3.923 16 H 0.068 0.932 17 C 0.155 3.845 18 N -0.744 5.744 19 C -0.247 4.247 20 H 0.076 0.924 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.270 1.270 27 C -0.129 4.129 28 C -0.109 4.109 29 C 0.112 3.888 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.016 0.984 44 H 0.044 0.956 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.105 0.895 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.987 19.131 13.572 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.208 4.208 4 C 0.038 3.962 5 H 0.158 0.842 6 F -0.184 7.184 7 C 0.279 3.721 8 O -0.452 6.452 9 N -0.329 5.329 10 C -0.027 4.027 11 C -0.156 4.156 12 C -0.080 4.080 13 C -0.028 4.028 14 O -0.319 6.319 15 C 0.020 3.980 16 H 0.086 0.914 17 C 0.029 3.971 18 N -0.386 5.386 19 C -0.378 4.378 20 H 0.094 0.906 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.195 1.195 27 C -0.167 4.167 28 C -0.147 4.147 29 C -0.010 4.010 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.123 0.877 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.343 19.384 13.859 27.813 hybrid contribution 0.728 -0.604 -0.435 1.041 sum -13.616 18.780 13.424 26.801 Atomic orbital electron populations 1.21853 0.91782 1.03744 1.03012 1.21749 0.98717 0.96936 0.95671 1.21821 1.00156 0.95998 1.02859 1.21930 0.91010 0.98402 0.84824 0.84246 1.92829 1.91888 1.80525 1.53123 1.21413 0.91547 0.80137 0.79039 1.90727 1.65265 1.44224 1.44974 1.48136 1.07740 1.29889 1.47128 1.22267 0.96109 0.92504 0.91846 1.21920 0.93324 1.04317 0.96080 1.21405 0.97091 0.95126 0.94364 1.23356 0.97990 0.86232 0.95202 1.89058 1.66991 1.21202 1.54641 1.23320 0.96338 0.90074 0.88258 0.91406 1.20912 0.96544 0.90462 0.89217 1.42515 1.53277 1.29414 1.13393 1.19664 1.18043 1.01918 0.98213 0.90596 1.25620 1.02385 1.02990 0.96046 1.69839 1.45821 1.42253 1.04159 0.85104 0.78564 0.79397 0.76469 1.21020 1.22244 1.19519 1.23247 1.03393 0.93502 0.96578 1.21804 1.00564 0.98262 0.94105 1.21644 0.79649 1.03147 0.96546 0.92878 0.90561 0.90246 0.87017 0.94435 0.90304 0.92972 0.86747 0.89063 0.89702 0.88897 0.91599 0.89875 0.96639 0.93855 0.79417 0.94012 0.87707 0.90414 0.90350 0.90871 0.90501 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.11 71.98 0.66 -0.30 16 2 C -0.11 -1.07 2.48 -10.79 -0.03 -1.10 16 3 C -0.15 -2.10 8.84 71.98 0.64 -1.46 16 4 C 0.08 1.03 2.54 29.85 0.08 1.10 16 5 H 0.14 0.87 6.62 -2.39 -0.02 0.86 16 6 F -0.20 -4.15 15.80 44.97 0.71 -3.44 16 7 C 0.49 9.30 6.03 87.66 0.53 9.83 16 8 O -0.57 -16.45 15.81 -3.05 -0.05 -16.50 16 9 N -0.60 -8.42 2.96 -818.50 -2.43 -10.85 16 10 C 0.09 0.75 5.46 86.39 0.47 1.22 16 11 C -0.12 -1.18 4.67 30.50 0.14 -1.04 16 12 C -0.08 -1.27 0.63 -51.91 -0.03 -1.30 16 13 C 0.05 1.10 7.04 72.18 0.51 1.61 16 14 O -0.40 -13.80 11.21 -148.98 -1.67 -15.47 16 15 C 0.08 2.36 3.39 31.31 0.11 2.47 16 16 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 6.17 6.00 86.38 0.52 6.69 16 18 N -0.74 -39.06 5.58 -343.44 -1.92 -40.98 16 19 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 23 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 C -0.13 -2.54 4.55 31.76 0.14 -2.39 16 28 C -0.11 -1.66 4.54 30.50 0.14 -1.53 16 29 C 0.11 1.80 6.12 86.40 0.53 2.33 16 30 H 0.05 0.49 7.94 -2.38 -0.02 0.47 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.11 0.67 6.99 -2.39 -0.02 0.66 16 34 H 0.04 0.69 7.02 -2.38 -0.02 0.68 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.85 7.81 -2.38 -0.02 0.83 16 37 H 0.11 0.30 5.00 -2.39 -0.01 0.29 16 38 H 0.09 0.64 6.45 -2.39 -0.02 0.63 16 39 H 0.08 0.69 7.91 -2.39 -0.02 0.67 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.34 7.68 -2.39 -0.02 1.32 16 42 H 0.08 1.77 7.68 -2.39 -0.02 1.75 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.37 21.22 7.67 -92.71 -0.71 20.51 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.10 1.54 6.03 -2.39 -0.01 1.52 16 48 H 0.08 1.60 7.51 -2.38 -0.02 1.59 16 49 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.08 1.53 7.02 -2.39 -0.02 1.51 16 52 H 0.08 1.21 7.35 -2.39 -0.02 1.19 16 Total: -1.00 -78.71 398.26 2.87 -75.84 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.21 Total: 24.34 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.70 Total: -1.24 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.06 Total: -112.21 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.72 Total: -31.97 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.71 Total: -3.44 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.71 2.87 -75.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464096.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.222 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds