Wall clock time and date at job start Wed Apr 1 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47330 * 2 1 4 4 C 1.53004 * 109.47071 * 120.00340 * 2 1 3 5 5 H 1.09002 * 109.46848 * 184.99762 * 4 2 1 6 6 F 1.39898 * 109.46934 * 304.99592 * 4 2 1 7 7 C 1.50696 * 109.47145 * 64.99891 * 4 2 1 8 8 O 1.21287 * 120.00089 * 258.77877 * 7 4 2 9 9 N 1.34777 * 120.00132 * 78.78152 * 7 4 2 10 10 C 1.46931 * 120.56457 * 184.93434 * 9 7 4 11 11 C 1.52861 * 108.94832 * 234.10809 * 10 9 7 12 12 C 1.52411 * 109.45732 * 306.53122 * 11 10 9 13 13 C 1.53968 * 110.24644 * 297.32692 * 12 11 10 14 14 O 1.44549 * 104.69451 * 265.10598 * 13 12 11 15 15 C 1.44477 * 105.35901 * 319.97757 * 14 13 12 16 16 H 1.09001 * 110.36513 * 281.33279 * 15 14 13 17 17 C 1.52999 * 110.36546 * 159.12083 * 15 14 13 18 18 N 1.46501 * 109.47476 * 66.45397 * 17 15 14 19 19 C 1.36932 * 120.00363 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99785 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00413 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99841 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00554 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47236 * 89.99459 * 23 21 19 25 25 H 1.48499 * 109.47571 * 210.00023 * 23 21 19 26 26 H 1.48506 * 109.46738 * 329.99958 * 23 21 19 27 27 C 1.53990 * 110.27668 * 182.34484 * 12 11 10 28 28 C 1.52409 * 111.00406 * 59.80561 * 12 11 10 29 29 C 1.46922 * 120.56889 * 5.21230 * 9 7 4 30 30 H 1.09005 * 109.46603 * 299.99644 * 1 2 3 31 31 H 1.08995 * 109.46970 * 59.99591 * 1 2 3 32 32 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46830 * 239.99873 * 2 1 3 34 34 H 1.08996 * 109.47019 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46744 * 300.00405 * 3 2 1 36 36 H 1.08997 * 109.46811 * 60.00327 * 3 2 1 37 37 H 1.09000 * 109.59735 * 353.92636 * 10 9 7 38 38 H 1.08999 * 109.59172 * 114.38889 * 10 9 7 39 39 H 1.08998 * 109.55286 * 186.46978 * 11 10 9 40 40 H 1.09006 * 109.34494 * 66.46271 * 11 10 9 41 41 H 1.08998 * 110.39327 * 23.90765 * 13 12 11 42 42 H 1.08999 * 110.39557 * 146.29861 * 13 12 11 43 43 H 1.09005 * 109.46447 * 186.44941 * 17 15 14 44 44 H 1.08997 * 109.47464 * 306.44630 * 17 15 14 45 45 H 0.97004 * 119.99246 * 359.97438 * 18 17 15 46 46 H 0.96996 * 119.99859 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.54235 * 237.23926 * 27 12 11 48 48 H 1.09005 * 110.54154 * 0.03978 * 27 12 11 49 49 H 1.08995 * 109.48253 * 180.10563 * 28 12 11 50 50 H 1.09001 * 109.50146 * 60.06259 * 28 12 11 51 51 H 1.09002 * 109.59483 * 245.62220 * 29 9 7 52 52 H 1.09009 * 109.58959 * 5.92203 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 9 1.4823 -0.1316 2.3886 7 6 1.6414 -2.1734 1.1888 8 8 0.6920 -2.5688 1.8317 9 7 2.3398 -3.0326 0.4204 10 6 1.8990 -4.4258 0.2671 11 6 3.0552 -5.3556 0.6349 12 6 4.2888 -4.9772 -0.1763 13 6 4.0183 -5.1720 -1.6794 14 8 4.5244 -6.4934 -1.9748 15 6 5.7528 -6.6096 -1.2231 16 1 6.5605 -6.0843 -1.7328 17 6 6.1182 -8.0820 -1.0246 18 7 6.4456 -8.6829 -2.3199 19 6 6.8058 -10.0021 -2.3913 20 1 6.8490 -10.5994 -1.4925 21 6 7.1155 -10.5716 -3.6186 22 7 7.0623 -9.8438 -4.7140 23 14 7.6062 -12.3714 -3.7161 24 1 6.3935 -13.2051 -3.9150 25 1 8.5360 -12.5699 -4.8568 26 1 8.2793 -12.7699 -2.4537 27 6 5.4492 -5.9398 0.1368 28 6 4.7058 -3.5381 0.1028 29 6 3.5584 -2.5938 -0.2732 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 1.0536 -4.6166 0.9282 38 1 1.6048 -4.6043 -0.7671 39 1 2.7780 -6.3867 0.4157 40 1 3.2745 -5.2560 1.6981 41 1 2.9487 -5.1208 -1.8827 42 1 4.5528 -4.4216 -2.2619 43 1 6.9802 -8.1560 -0.3615 44 1 5.2733 -8.6096 -0.5823 45 1 6.4071 -8.1463 -3.1271 46 1 7.2783 -10.2419 -5.5717 47 1 6.3185 -5.3876 0.4938 48 1 5.1407 -6.6852 0.8699 49 1 5.5871 -3.2935 -0.4901 50 1 4.9374 -3.4253 1.1620 51 1 3.3971 -2.6253 -1.3508 52 1 3.8051 -1.5761 0.0298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755464097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:09 Heat of formation + Delta-G solvation = -150.129256 kcal Electronic energy + Delta-G solvation = -31380.580793 eV Core-core repulsion = 27100.336658 eV Total energy + Delta-G solvation = -4280.244135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.91207 -41.90996 -40.48398 -37.98479 -36.63329 -36.33894 -34.41453 -33.50684 -32.47762 -31.13508 -29.29668 -28.16311 -27.87968 -26.73203 -25.17859 -24.42321 -23.89182 -22.17201 -21.80879 -20.93432 -19.59555 -19.17414 -18.64526 -17.83990 -17.26006 -17.14956 -16.73398 -16.47656 -16.38691 -16.19042 -16.01726 -15.52195 -15.25992 -15.01097 -14.91042 -14.80655 -14.44030 -14.14189 -14.00799 -13.93834 -13.86095 -13.76278 -13.37120 -13.19066 -13.07085 -13.00740 -12.89383 -12.77454 -12.43715 -12.25200 -12.23951 -12.14915 -12.08556 -11.95376 -11.91061 -11.66732 -11.53691 -11.35148 -11.28996 -10.97596 -10.69968 -10.56520 -9.75722 -9.00544 -7.94645 -5.23950 1.32046 1.46409 1.49188 1.57393 1.72345 2.55578 3.00612 3.13075 3.37477 3.38635 3.46349 3.56993 3.60817 3.68116 3.78978 3.91145 4.01188 4.07314 4.14395 4.19697 4.22825 4.33591 4.36702 4.38911 4.49521 4.55787 4.56816 4.61160 4.67196 4.72928 4.76039 4.80662 4.86083 4.90374 4.96731 4.97974 4.99149 5.01246 5.08380 5.11520 5.19267 5.25082 5.28459 5.31359 5.39291 5.46120 5.47732 6.07404 6.20387 6.27192 6.92651 7.33004 8.09025 8.32803 9.29072 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.002003 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.337896 B =13978.626067 C =14173.338498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.079 3.921 5 H 0.143 0.857 6 F -0.203 7.203 7 C 0.490 3.510 8 O -0.574 6.574 9 N -0.597 5.597 10 C 0.110 3.890 11 C -0.111 4.111 12 C -0.081 4.081 13 C 0.044 3.956 14 O -0.395 6.395 15 C 0.076 3.924 16 H 0.065 0.935 17 C 0.155 3.845 18 N -0.743 5.743 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.977 3.023 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.267 1.267 27 C -0.128 4.128 28 C -0.117 4.117 29 C 0.093 3.907 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.016 0.984 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 26.542 11.105 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.040 3.960 5 H 0.160 0.840 6 F -0.184 7.184 7 C 0.278 3.722 8 O -0.454 6.454 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.150 4.150 12 C -0.081 4.081 13 C -0.032 4.032 14 O -0.314 6.314 15 C 0.018 3.982 16 H 0.083 0.917 17 C 0.028 3.972 18 N -0.386 5.386 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.805 3.195 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.192 1.192 27 C -0.166 4.166 28 C -0.155 4.155 29 C -0.029 4.029 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.120 0.880 48 H 0.093 0.907 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.111 0.889 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.156 26.020 11.420 29.563 hybrid contribution -0.025 -1.240 -0.285 1.273 sum -8.181 24.779 11.135 28.371 Atomic orbital electron populations 1.21829 0.95006 1.01288 1.02821 1.21742 0.96905 0.98716 0.95701 1.21848 1.02429 0.93062 1.02989 1.21940 1.01117 0.88136 0.84820 0.83977 1.92829 1.88102 1.84317 1.53139 1.21470 0.82750 0.89287 0.78725 1.90729 1.30552 1.79336 1.44738 1.48151 1.26794 1.10457 1.47528 1.21577 0.97385 0.79984 1.02246 1.21692 0.94041 0.99144 1.00075 1.21414 0.94876 0.96627 0.95181 1.23766 1.00325 0.84942 0.94204 1.89305 1.38705 1.34009 1.69431 1.23171 0.87350 0.95441 0.92231 0.91669 1.20929 0.96803 0.91350 0.88076 1.42507 1.82043 1.09159 1.04841 1.19659 1.36657 0.88223 0.93416 0.90659 1.25627 1.03577 1.02604 0.95228 1.69839 1.57101 1.37062 0.97999 0.85096 0.77394 0.79717 0.77277 1.21564 1.21928 1.19213 1.22962 0.99170 0.98442 0.96070 1.21929 0.98556 0.91367 1.03635 1.22296 0.82340 0.99804 0.98410 0.93092 0.90210 0.94534 0.86907 0.90080 0.90555 0.92942 0.90629 0.90098 0.91227 0.91239 0.88916 0.90720 0.94134 0.96641 0.79381 0.93982 0.87991 0.90744 0.87920 0.90179 0.88861 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.84 71.98 0.64 -1.49 16 2 C -0.11 -1.03 2.61 -10.79 -0.03 -1.05 16 3 C -0.15 -0.85 9.11 71.98 0.66 -0.19 16 4 C 0.08 1.02 2.56 29.85 0.08 1.10 16 5 H 0.14 0.77 6.39 -2.39 -0.02 0.76 16 6 F -0.20 -4.12 15.72 44.97 0.71 -3.42 16 7 C 0.49 9.45 6.03 87.66 0.53 9.97 16 8 O -0.57 -16.95 15.90 -3.05 -0.05 -17.00 16 9 N -0.60 -8.70 2.97 -819.33 -2.43 -11.14 16 10 C 0.11 1.97 6.11 86.25 0.53 2.50 16 11 C -0.11 -2.04 4.67 30.35 0.14 -1.90 16 12 C -0.08 -1.36 0.68 -51.91 -0.04 -1.39 16 13 C 0.04 0.94 5.63 72.31 0.41 1.35 16 14 O -0.39 -13.61 11.33 -148.98 -1.69 -15.30 16 15 C 0.08 2.39 3.33 31.14 0.10 2.49 16 16 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 17 C 0.15 6.34 5.88 86.38 0.51 6.84 16 18 N -0.74 -39.55 5.58 -343.45 -1.92 -41.47 16 19 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 23 Si 0.98 46.98 29.55 68.60 2.03 49.00 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C -0.13 -2.71 5.91 31.47 0.19 -2.52 16 28 C -0.12 -1.11 4.55 30.50 0.14 -0.97 16 29 C 0.09 0.68 5.35 86.40 0.46 1.14 16 30 H 0.05 0.85 7.69 -2.38 -0.02 0.83 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.68 7.21 -2.39 -0.02 0.66 16 33 H 0.11 0.61 7.44 -2.38 -0.02 0.59 16 34 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.05 0.45 7.93 -2.39 -0.02 0.43 16 37 H 0.08 1.68 6.99 -2.39 -0.02 1.66 16 38 H 0.08 1.34 6.44 -2.39 -0.02 1.33 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.09 1.84 6.00 -2.39 -0.01 1.83 16 42 H 0.07 1.33 7.70 -2.39 -0.02 1.31 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.37 21.42 7.67 -92.70 -0.71 20.71 16 46 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.10 1.66 7.71 -2.39 -0.02 1.64 16 48 H 0.07 1.66 7.45 -2.38 -0.02 1.65 16 49 H 0.10 0.70 8.12 -2.39 -0.02 0.68 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.09 0.50 7.45 -2.39 -0.02 0.49 16 52 H 0.12 0.16 5.36 -2.38 -0.01 0.15 16 Total: -1.00 -79.88 399.15 2.75 -77.13 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.20 Total: 24.54 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.61 Total: -1.76 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.07 Total: -113.20 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.74 Total: -32.30 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.71 Total: -3.42 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -79.88 2.75 -77.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755464097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.000 kcal (2) G-P(sol) polarization free energy of solvation -79.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds