Wall clock time and date at job start Wed Apr 1 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49531 * 2 1 4 4 C 1.53621 * 109.63354 * 239.90034 * 2 1 3 5 5 N 1.46926 * 108.54301 * 294.86815 * 4 2 1 6 6 C 1.34771 * 120.63441 * 126.36968 * 5 4 2 7 7 O 1.21515 * 120.00158 * 359.71823 * 6 5 4 8 8 O 1.34637 * 120.00399 * 179.71518 * 6 5 4 9 9 C 1.45194 * 117.00311 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46979 * 60.00565 * 9 8 6 11 11 C 1.52997 * 109.47240 * 300.00529 * 9 8 6 12 12 C 1.52999 * 109.47457 * 180.02562 * 9 8 6 13 13 C 1.46929 * 118.73494 * 306.08883 * 5 4 2 14 14 C 1.53192 * 108.77136 * 53.86544 * 13 5 4 15 15 C 1.53039 * 109.49899 * 120.06497 * 2 1 3 16 16 H 1.08991 * 109.44964 * 178.59839 * 15 2 1 17 17 N 1.46900 * 109.46070 * 298.56747 * 15 2 1 18 18 C 1.46895 * 111.00008 * 205.06763 * 17 15 2 19 19 C 1.53005 * 109.47373 * 179.97438 * 18 17 15 20 20 O 1.42904 * 109.46845 * 64.99718 * 19 18 17 21 21 C 1.42901 * 113.99816 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.47286 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99292 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00383 * 180.02562 * 22 21 20 25 25 N 1.31517 * 119.99502 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00216 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47201 * 90.00040 * 26 24 22 28 28 H 1.48497 * 109.47198 * 210.00138 * 26 24 22 29 29 H 1.48506 * 109.46986 * 329.99636 * 26 24 22 30 30 H 1.09000 * 109.46617 * 299.93683 * 1 2 3 31 31 H 1.09003 * 109.47055 * 59.93665 * 1 2 3 32 32 H 1.09001 * 109.47117 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.73885 * 175.12473 * 4 2 1 34 34 H 1.09002 * 109.66589 * 54.55655 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99655 * 10 9 8 36 36 H 1.08993 * 109.46955 * 60.00092 * 10 9 8 37 37 H 1.09000 * 109.47050 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47140 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.47230 * 299.99118 * 11 9 8 40 40 H 1.09001 * 109.47375 * 59.99957 * 11 9 8 41 41 H 1.09001 * 109.47362 * 300.00827 * 12 9 8 42 42 H 1.09002 * 109.46716 * 60.00187 * 12 9 8 43 43 H 1.09000 * 109.47486 * 180.02562 * 12 9 8 44 44 H 1.09001 * 109.58567 * 173.64911 * 13 5 4 45 45 H 1.08995 * 109.59052 * 294.07584 * 13 5 4 46 46 H 1.08999 * 109.49976 * 65.31555 * 14 13 5 47 47 H 1.09007 * 109.49437 * 185.37527 * 14 13 5 48 48 H 1.00900 * 111.00366 * 81.10957 * 17 15 2 49 49 H 1.08997 * 109.47114 * 299.99673 * 18 17 15 50 50 H 1.09001 * 109.47248 * 60.00087 * 18 17 15 51 51 H 1.08999 * 109.47373 * 184.99957 * 19 18 17 52 52 H 1.09006 * 109.46934 * 305.00362 * 19 18 17 53 53 H 1.08994 * 109.47494 * 300.00418 * 21 20 19 54 54 H 1.09008 * 109.46899 * 60.00370 * 21 20 19 55 55 H 0.97006 * 119.99431 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7256 -1.2518 5 7 1.6515 -2.1384 -1.1690 6 6 0.9747 -2.7226 -2.1775 7 8 0.6808 -2.0787 -3.1652 8 8 0.6243 -4.0197 -2.0907 9 6 -0.1034 -4.5825 -3.2140 10 6 0.7475 -4.4705 -4.4807 11 6 -1.4125 -3.8152 -3.4096 12 6 -0.4126 -6.0548 -2.9353 13 6 2.0140 -2.9040 0.0316 14 6 1.5030 -2.1554 1.2665 15 6 2.0409 -0.7227 1.2485 16 1 3.1305 -0.7441 1.2352 17 7 1.5799 -0.0118 2.4486 18 6 2.4732 -0.2659 3.5866 19 6 1.9622 0.4900 4.8149 20 8 0.6930 -0.0383 5.2052 21 6 0.1244 0.6011 6.3497 22 6 -1.2047 -0.0325 6.6706 23 1 -1.5777 -0.8427 6.0616 24 6 -1.9446 0.4221 7.7415 25 7 -1.4905 1.4091 8.4828 26 14 -3.5918 -0.3637 8.1397 27 1 -3.3864 -1.4944 9.0802 28 1 -4.4832 0.6454 8.7659 29 1 -4.2153 -0.8668 6.8893 30 1 -0.3632 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1327 -0.6518 -1.2983 34 1 1.6088 -0.2757 -2.1431 35 1 0.9674 -3.4215 -4.6791 36 1 1.6801 -5.0172 -4.3413 37 1 0.2014 -4.8935 -5.3238 38 1 -1.9587 -4.2374 -4.2531 39 1 -2.0188 -3.8951 -2.5073 40 1 -1.1927 -2.7662 -3.6080 41 1 0.5199 -6.6018 -2.7957 42 1 -1.0189 -6.1342 -2.0331 43 1 -0.9585 -6.4775 -3.7788 44 1 1.5554 -3.8918 -0.0127 45 1 3.0979 -3.0043 0.0876 46 1 0.4133 -2.1351 1.2546 47 1 1.8476 -2.6626 2.1678 48 1 0.6283 -0.2608 2.6732 49 1 2.4947 -1.3345 3.8002 50 1 3.4790 0.0762 3.3425 51 1 2.6716 0.3738 5.6342 52 1 1.8566 1.5475 4.5728 53 1 0.7958 0.4869 7.2007 54 1 -0.0191 1.6611 6.1399 55 1 -2.0108 1.7287 9.2365 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496304602.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:23 Heat of formation + Delta-G solvation = -157.779692 kcal Electronic energy + Delta-G solvation = -31477.924555 eV Core-core repulsion = 27320.808977 eV Total energy + Delta-G solvation = -4157.115578 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00712 -40.34518 -38.76380 -37.89282 -36.30418 -35.15032 -34.81453 -33.61406 -32.25661 -29.96342 -28.48819 -28.35701 -28.29259 -27.97416 -25.28018 -24.50891 -24.03775 -23.09303 -22.50003 -20.71289 -19.74523 -19.05196 -18.61224 -17.67446 -17.48293 -17.30023 -16.91127 -16.50554 -16.39215 -15.99840 -15.81357 -15.64027 -15.40742 -15.22290 -15.13053 -14.82786 -14.43441 -14.11071 -14.00877 -13.68433 -13.46394 -13.35445 -13.21981 -13.11781 -12.95163 -12.86413 -12.85341 -12.75689 -12.70773 -12.53603 -12.50842 -12.43402 -12.33899 -12.25082 -12.04830 -11.88082 -11.54094 -11.37454 -11.29298 -11.26310 -11.01448 -10.86541 -10.21633 -9.75953 -9.24610 -8.32485 -6.44566 1.15728 1.39212 1.41814 1.53732 1.77106 2.33868 2.82389 3.01434 3.17790 3.26169 3.70556 3.75336 3.80843 3.82861 3.95791 4.00680 4.07416 4.21647 4.26812 4.36802 4.39100 4.45131 4.54469 4.59150 4.61868 4.64330 4.69594 4.76784 4.76936 4.79005 4.81574 4.82977 4.87034 4.88248 4.88360 4.93805 4.99839 5.10234 5.13570 5.17020 5.19853 5.23056 5.28502 5.33052 5.38812 5.48616 5.54441 5.57885 5.96022 6.19155 6.31623 6.42380 6.54119 6.82473 7.27322 7.28865 8.79739 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002225 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.931628 B =12578.556056 C =13862.974067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.098 0.902 4 C 0.134 3.866 5 N -0.590 5.590 6 C 0.648 3.352 7 O -0.594 6.594 8 O -0.369 6.369 9 C 0.124 3.876 10 C -0.176 4.176 11 C -0.180 4.180 12 C -0.136 4.136 13 C 0.122 3.878 14 C -0.163 4.163 15 C 0.097 3.903 16 H 0.097 0.903 17 N -0.689 5.689 18 C 0.077 3.923 19 C 0.052 3.948 20 O -0.407 6.407 21 C 0.212 3.788 22 C -0.545 4.545 23 H 0.062 0.938 24 C 0.005 3.995 25 N -0.930 5.930 26 Si 0.982 3.018 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.265 1.265 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.342 0.658 49 H 0.037 0.963 50 H 0.107 0.893 51 H 0.047 0.953 52 H 0.041 0.959 53 H -0.015 1.015 54 H -0.017 1.017 55 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -12.626 -25.203 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.116 0.884 4 C 0.013 3.987 5 N -0.330 5.330 6 C 0.403 3.597 7 O -0.485 6.485 8 O -0.284 6.284 9 C 0.088 3.912 10 C -0.233 4.233 11 C -0.237 4.237 12 C -0.193 4.193 13 C -0.001 4.001 14 C -0.202 4.202 15 C -0.013 4.013 16 H 0.115 0.885 17 N -0.319 5.319 18 C -0.052 4.052 19 C -0.025 4.025 20 O -0.327 6.327 21 C 0.137 3.863 22 C -0.583 4.583 23 H 0.080 0.920 24 C -0.193 4.193 25 N -0.570 5.570 26 Si 0.805 3.195 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.189 1.189 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.160 0.840 49 H 0.055 0.945 50 H 0.125 0.875 51 H 0.065 0.935 52 H 0.059 0.941 53 H 0.003 0.997 54 H 0.001 0.999 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.167 -11.933 -25.640 29.730 hybrid contribution -1.059 -0.489 1.035 1.560 sum 8.107 -12.422 -24.605 28.730 Atomic orbital electron populations 1.21716 0.96034 1.00623 1.01223 1.21530 0.95643 1.00325 0.93048 0.88433 1.21887 1.00688 0.77440 0.98710 1.47078 1.56641 1.12162 1.17140 1.18162 0.77645 0.80997 0.82908 1.90869 1.60125 1.65150 1.32367 1.86302 1.70411 1.24274 1.47383 1.22379 0.90663 0.94415 0.83716 1.22441 1.00304 1.03619 0.96962 1.22468 0.96292 1.01973 1.02962 1.21879 1.03140 0.90433 1.03855 1.21716 1.01478 0.94770 0.82131 1.22649 1.01324 0.97781 0.98481 1.21597 1.00109 0.89975 0.89649 0.88462 1.60608 1.06497 1.60720 1.04080 1.21946 0.97060 0.97930 0.88282 1.22645 0.85684 0.97650 0.96538 1.87749 1.34792 1.61367 1.48833 1.19767 0.92638 0.91411 0.82499 1.21371 1.04021 1.19207 1.13697 0.92023 1.25959 1.02754 0.95437 0.95200 1.70075 1.40446 1.27688 1.18744 0.85202 0.77465 0.78188 0.78685 1.19248 1.20034 1.18916 0.93033 0.93192 0.94163 0.88596 0.89575 0.91871 0.91825 0.89240 0.89139 0.92672 0.91941 0.90992 0.91711 0.88028 0.89260 0.88865 0.92655 0.90282 0.83997 0.94513 0.87502 0.93511 0.94109 0.99745 0.99895 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.47 71.98 0.61 -2.68 16 2 C -0.09 -1.64 2.92 -10.57 -0.03 -1.67 16 3 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.13 2.34 5.87 86.51 0.51 2.84 16 5 N -0.59 -11.55 2.40 -948.42 -2.28 -13.82 16 6 C 0.65 15.38 7.74 129.79 1.00 16.38 16 7 O -0.59 -16.53 11.29 19.79 0.22 -16.31 16 8 O -0.37 -7.97 8.53 -55.46 -0.47 -8.45 16 9 C 0.12 2.16 1.13 -10.79 -0.01 2.14 16 10 C -0.18 -2.83 8.37 71.98 0.60 -2.22 16 11 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 12 C -0.14 -1.57 8.85 71.98 0.64 -0.94 16 13 C 0.12 1.98 6.44 86.36 0.56 2.53 16 14 C -0.16 -3.13 4.99 30.67 0.15 -2.98 16 15 C 0.10 1.87 2.13 44.94 0.10 1.96 16 16 H 0.10 1.53 7.80 -2.39 -0.02 1.51 16 17 N -0.69 -18.06 5.81 -491.45 -2.85 -20.91 16 18 C 0.08 2.02 5.90 86.31 0.51 2.53 16 19 C 0.05 1.87 6.28 71.98 0.45 2.32 16 20 O -0.41 -19.33 9.85 -148.98 -1.47 -20.79 16 21 C 0.21 11.90 5.69 71.24 0.41 12.31 16 22 C -0.55 -32.41 9.43 25.60 0.24 -32.16 16 23 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 24 C 0.00 0.29 5.46 84.65 0.46 0.75 16 25 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 26 Si 0.98 44.45 29.54 68.60 2.03 46.48 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 29 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.05 1.38 7.24 -2.39 -0.02 1.36 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.03 5.97 -2.39 -0.01 1.01 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.74 7.00 -2.39 -0.02 1.73 16 35 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 1.50 6.93 -2.39 -0.02 1.48 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.32 6.33 -2.39 -0.02 1.30 16 47 H 0.08 1.52 7.43 -2.38 -0.02 1.50 16 48 H 0.34 10.86 7.32 -89.69 -0.66 10.20 16 49 H 0.04 0.96 7.42 -2.39 -0.02 0.94 16 50 H 0.11 2.16 8.06 -2.39 -0.02 2.14 16 51 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 53 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 54 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 55 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -69.99 421.56 2.46 -67.53 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.20 Total: 23.69 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.80 Total: -1.57 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.84 Total: -90.58 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.72 Total: -45.55 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.99 2.46 -67.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496304602.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.254 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds