Wall clock time and date at job start Wed Apr 1 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47242 * 2 1 4 4 N 1.46907 * 109.46926 * 183.79993 * 3 2 1 5 5 C 1.46894 * 110.99837 * 296.96950 * 4 3 2 6 6 C 1.52997 * 109.47631 * 288.10807 * 5 4 3 7 7 H 1.09001 * 109.47218 * 58.56253 * 6 5 4 8 8 O 1.42901 * 109.46903 * 298.56422 * 6 5 4 9 9 C 1.50703 * 109.47327 * 178.56223 * 6 5 4 10 10 H 1.08000 * 119.99921 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00031 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99860 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00068 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47043 * 89.99746 * 13 11 9 15 15 H 1.48500 * 109.46865 * 209.99817 * 13 11 9 16 16 H 1.48503 * 109.46985 * 329.99460 * 13 11 9 17 17 C 1.46901 * 110.99992 * 60.92771 * 4 3 2 18 18 H 1.08999 * 110.77727 * 292.80604 * 17 4 3 19 19 C 1.55153 * 110.71794 * 56.04683 * 17 4 3 20 20 C 1.54916 * 101.58021 * 153.86350 * 19 17 4 21 21 N 1.47427 * 104.83241 * 322.98921 * 20 19 17 22 22 C 1.34768 * 125.64890 * 204.09476 * 21 20 19 23 23 O 1.21516 * 120.00422 * 180.02562 * 22 21 20 24 24 O 1.34633 * 120.00179 * 0.29553 * 22 21 20 25 25 C 1.45201 * 117.00427 * 179.72880 * 24 22 21 26 26 C 1.52995 * 109.47240 * 59.99585 * 25 24 22 27 27 C 1.52996 * 109.47253 * 180.02562 * 25 24 22 28 28 C 1.53005 * 109.46815 * 299.99847 * 25 24 22 29 29 C 1.47027 * 108.70226 * 24.35497 * 21 20 19 30 30 H 1.08998 * 109.47074 * 300.00591 * 1 2 3 31 31 H 1.09007 * 109.46877 * 59.99783 * 1 2 3 32 32 H 1.08992 * 109.47426 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47299 * 240.00130 * 2 1 3 34 34 H 1.08997 * 109.47355 * 119.99964 * 2 1 3 35 35 H 1.08996 * 109.46967 * 63.79952 * 3 2 1 36 36 H 1.09000 * 109.46963 * 303.79559 * 3 2 1 37 37 H 1.09002 * 109.47380 * 48.11215 * 5 4 3 38 38 H 1.09002 * 109.47124 * 168.10437 * 5 4 3 39 39 H 0.96699 * 113.99784 * 299.99248 * 8 6 5 40 40 H 0.97007 * 120.00111 * 180.02562 * 12 11 9 41 41 H 1.09000 * 111.00883 * 35.79060 * 19 17 4 42 42 H 1.08998 * 111.03612 * 271.94387 * 19 17 4 43 43 H 1.09000 * 110.36839 * 204.14635 * 20 19 17 44 44 H 1.09002 * 110.36738 * 81.82737 * 20 19 17 45 45 H 1.09005 * 109.47133 * 60.00677 * 26 25 24 46 46 H 1.08997 * 109.47126 * 180.02562 * 26 25 24 47 47 H 1.08994 * 109.47335 * 300.00631 * 26 25 24 48 48 H 1.09000 * 109.47479 * 59.99607 * 27 25 24 49 49 H 1.09004 * 109.47351 * 179.97438 * 27 25 24 50 50 H 1.08997 * 109.47412 * 299.99548 * 27 25 24 51 51 H 1.08994 * 109.46867 * 59.99915 * 28 25 24 52 52 H 1.08997 * 109.47136 * 179.97438 * 28 25 24 53 53 H 1.09000 * 109.46973 * 299.99815 * 28 25 24 54 54 H 1.08998 * 109.88133 * 118.13167 * 29 21 20 55 55 H 1.09002 * 109.88304 * 239.29944 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5062 1.4435 -0.0918 5 6 4.1074 0.7950 1.0811 6 6 3.9472 1.7014 2.3033 7 1 2.8886 1.8981 2.4735 8 8 4.6300 2.9355 2.0738 9 6 4.5326 1.0208 3.5137 10 1 4.9744 0.0398 3.4207 11 6 4.5032 1.6503 4.7401 12 7 3.9648 2.8448 4.8534 13 14 5.2295 0.8070 6.2404 14 1 6.6639 1.1703 6.3665 15 1 4.4991 1.2454 7.4567 16 1 5.1029 -0.6650 6.0906 17 6 3.9562 0.8041 -1.3354 18 1 3.7267 -0.2615 -1.3273 19 6 3.3174 1.4939 -2.5696 20 6 4.3643 1.1923 -3.6710 21 7 5.6677 1.2840 -2.9880 22 6 6.8481 1.5505 -3.5811 23 8 7.8642 1.6015 -2.9166 24 8 6.9009 1.7657 -4.9091 25 6 8.2051 2.0531 -5.4790 26 6 9.1474 0.8769 -5.2153 27 6 8.0664 2.2679 -6.9875 28 6 8.7757 3.3181 -4.8346 29 6 5.4672 1.0304 -1.5538 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.7333 1.9363 0.9220 36 1 1.6222 1.9756 -0.8540 37 1 3.6083 -0.1561 1.2663 38 1 5.1671 0.6191 0.8957 39 1 5.5787 2.8364 1.9146 40 1 3.9445 3.2878 5.7162 41 1 3.2175 2.5674 -2.4091 42 1 2.3541 1.0460 -2.8133 43 1 4.3007 1.9332 -4.4680 44 1 4.2156 0.1895 -4.0714 45 1 8.7409 -0.0243 -5.6744 46 1 10.1265 1.0929 -5.6428 47 1 9.2461 0.7243 -4.1406 48 1 7.3952 3.1060 -7.1750 49 1 9.0454 2.4841 -7.4153 50 1 7.6597 1.3670 -7.4469 51 1 8.8745 3.1655 -3.7600 52 1 9.7549 3.5336 -5.2621 53 1 8.1044 4.1560 -5.0225 54 1 6.0242 0.1431 -1.2529 55 1 5.7985 1.8926 -0.9750 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929524452.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:15 Heat of formation + Delta-G solvation = -148.504915 kcal Electronic energy + Delta-G solvation = -32140.384289 eV Core-core repulsion = 27983.670895 eV Total energy + Delta-G solvation = -4156.713394 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90322 -40.52473 -38.64708 -37.51347 -36.69686 -35.03648 -34.21290 -33.59568 -31.96740 -30.11803 -29.50908 -28.36223 -28.27280 -27.10576 -25.71963 -24.49668 -23.37851 -22.44000 -22.05460 -20.39408 -20.21684 -19.06964 -18.88083 -17.99432 -17.48613 -17.04670 -16.65710 -16.46786 -16.33522 -16.03195 -15.69967 -15.37091 -15.10241 -15.02850 -14.80989 -14.62226 -14.36989 -14.24289 -13.86708 -13.68101 -13.32724 -13.26054 -13.08276 -12.95218 -12.87635 -12.86882 -12.85193 -12.80312 -12.64569 -12.50428 -12.44619 -12.36030 -12.28097 -12.22201 -11.98523 -11.96947 -11.68544 -11.39063 -11.30450 -11.11441 -10.94645 -10.67973 -10.07079 -9.81206 -8.99552 -8.11908 -6.37149 1.01199 1.39196 1.40012 1.50147 1.72804 2.38203 2.83622 3.07875 3.14535 3.48324 3.62592 3.76953 3.80753 3.95864 3.99440 4.12192 4.19298 4.25708 4.31086 4.34927 4.44677 4.46629 4.50802 4.59782 4.61624 4.61980 4.71820 4.76967 4.77600 4.80403 4.83922 4.85208 4.89546 4.90553 4.97237 5.05626 5.07516 5.12823 5.17960 5.22604 5.28970 5.29361 5.34872 5.36646 5.45780 5.48088 5.62006 5.79950 6.03663 6.22890 6.34772 6.41483 6.76604 7.23980 7.36434 7.63040 8.92225 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.002860 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.758978 B = 9787.626042 C =11532.723467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 C 0.060 3.940 4 N -0.527 5.527 5 C 0.045 3.955 6 C 0.242 3.758 7 H 0.022 0.978 8 O -0.571 6.571 9 C -0.587 4.587 10 H 0.056 0.944 11 C 0.027 3.973 12 N -0.898 5.898 13 Si 0.955 3.045 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.075 3.925 18 H 0.070 0.930 19 C -0.114 4.114 20 C 0.107 3.893 21 N -0.603 5.603 22 C 0.661 3.339 23 O -0.597 6.597 24 O -0.361 6.361 25 C 0.123 3.877 26 C -0.179 4.179 27 C -0.132 4.132 28 C -0.181 4.181 29 C 0.139 3.861 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.348 0.652 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.054 0.946 52 H 0.092 0.908 53 H 0.061 0.939 54 H 0.059 0.941 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -5.197 -25.718 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C -0.067 4.067 4 N -0.250 5.250 5 C -0.083 4.083 6 C 0.184 3.816 7 H 0.040 0.960 8 O -0.374 6.374 9 C -0.625 4.625 10 H 0.074 0.926 11 C -0.176 4.176 12 N -0.535 5.535 13 Si 0.780 3.220 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.189 1.189 17 C -0.034 4.034 18 H 0.088 0.912 19 C -0.152 4.152 20 C -0.015 4.015 21 N -0.344 5.344 22 C 0.416 3.584 23 O -0.489 6.489 24 O -0.276 6.276 25 C 0.087 3.913 26 C -0.237 4.237 27 C -0.189 4.189 28 C -0.239 4.239 29 C 0.016 3.984 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.133 0.867 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.091 0.909 51 H 0.073 0.927 52 H 0.111 0.889 53 H 0.080 0.920 54 H 0.077 0.923 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.403 -4.261 -25.444 25.801 hybrid contribution 0.890 -1.240 1.672 2.263 sum 1.292 -5.500 -23.772 24.434 Atomic orbital electron populations 1.21639 0.94198 1.02070 1.02067 1.22123 0.97734 0.98036 1.01713 1.22207 0.86185 0.96151 1.02201 1.62161 1.08085 1.54082 1.00681 1.22724 0.98272 0.96142 0.91192 1.19126 0.91848 0.81415 0.89216 0.96034 1.86510 1.22685 1.34138 1.94019 1.22069 1.41398 1.03985 0.95069 0.92570 1.25853 0.94751 0.95104 1.01844 1.70220 1.43791 1.14541 1.24948 0.85629 0.78485 0.79114 0.78762 1.20104 1.20821 1.18902 1.22599 0.92229 0.97584 0.90973 0.91213 1.22888 0.98758 1.02037 0.91554 1.22549 0.79795 1.03372 0.95788 1.47161 1.06014 1.72157 1.09116 1.17653 0.82817 0.76491 0.81412 1.90908 1.33989 1.58363 1.65605 1.86296 1.37633 1.83341 1.20307 1.22456 0.78556 0.95429 0.94839 1.22467 1.00387 0.97552 1.03253 1.21865 1.04602 1.03504 0.88940 1.22485 1.02595 0.96538 1.02247 1.21782 0.97050 1.00613 0.78931 0.93930 0.90989 0.92027 0.90387 0.93861 0.93462 0.88793 0.94408 0.92237 0.80810 0.93100 0.90361 0.86739 0.88936 0.89197 0.91668 0.88943 0.92577 0.91135 0.87890 0.90873 0.92675 0.88884 0.92018 0.92261 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.16 -3.92 5.30 30.59 0.16 -3.75 16 3 C 0.06 1.78 4.93 86.30 0.43 2.21 16 4 N -0.53 -17.36 4.38 -864.02 -3.79 -21.15 16 5 C 0.04 1.78 4.33 86.30 0.37 2.15 16 6 C 0.24 12.40 2.83 29.85 0.08 12.49 16 7 H 0.02 1.25 6.65 -2.39 -0.02 1.23 16 8 O -0.57 -30.85 12.62 -148.98 -1.88 -32.73 16 9 C -0.59 -32.58 8.76 25.60 0.22 -32.36 16 10 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 11 C 0.03 1.53 5.40 84.66 0.46 1.99 16 12 N -0.90 -54.56 12.84 21.45 0.28 -54.29 16 13 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.08 1.91 2.00 46.11 0.09 2.01 16 18 H 0.07 1.63 6.72 -2.39 -0.02 1.61 16 19 C -0.11 -2.14 5.19 31.99 0.17 -1.98 16 20 C 0.11 1.95 6.92 86.86 0.60 2.55 16 21 N -0.60 -16.21 3.33 -942.05 -3.13 -19.34 16 22 C 0.66 19.85 7.93 129.79 1.03 20.88 16 23 O -0.60 -21.58 12.21 19.79 0.24 -21.34 16 24 O -0.36 -8.90 9.41 -55.42 -0.52 -9.43 16 25 C 0.12 2.43 1.13 -10.79 -0.01 2.42 16 26 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 27 C -0.13 -1.57 8.85 71.98 0.64 -0.93 16 28 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 29 C 0.14 4.13 5.35 86.73 0.46 4.59 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.61 6.40 -2.39 -0.02 1.60 16 34 H 0.04 1.31 6.42 -2.39 -0.02 1.29 16 35 H 0.05 1.76 6.57 -2.39 -0.02 1.74 16 36 H 0.09 2.28 6.93 -2.39 -0.02 2.26 16 37 H 0.04 1.48 5.96 -2.39 -0.01 1.47 16 38 H 0.06 2.38 6.98 -2.39 -0.02 2.36 16 39 H 0.35 17.35 9.04 -74.06 -0.67 16.68 16 40 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 41 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 52 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 54 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 55 H 0.06 2.05 8.02 -2.39 -0.02 2.03 16 Total: -1.00 -72.22 420.66 0.04 -72.18 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.19 Total: 36.01 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.62 Total: 3.91 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -6.65 Total: -94.77 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -2.16 Total: -63.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.22 0.04 -72.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929524452.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.327 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds