Wall clock time and date at job start Wed Apr 1 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46162 * 2 1 4 4 C 1.53048 * 109.45672 * 240.03031 * 2 1 3 5 5 C 1.53189 * 109.31248 * 178.61331 * 4 2 1 6 6 N 1.46930 * 108.77774 * 54.63291 * 5 4 2 7 7 C 1.34771 * 120.63030 * 126.36376 * 6 5 4 8 8 O 1.21511 * 119.99962 * 174.33739 * 7 6 5 9 9 O 1.34645 * 120.00281 * 354.34048 * 7 6 5 10 10 C 1.45198 * 117.00133 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47109 * 59.99619 * 10 9 7 12 12 C 1.52999 * 109.46955 * 299.99821 * 10 9 7 13 13 C 1.53000 * 109.47205 * 179.97438 * 10 9 7 14 14 C 1.46927 * 118.73753 * 306.64621 * 6 5 4 15 15 H 1.09001 * 109.58578 * 293.56370 * 14 6 5 16 16 C 1.53002 * 109.58574 * 173.13904 * 14 6 5 17 17 C 1.52762 * 109.01034 * 53.30675 * 14 6 5 18 18 H 1.09001 * 109.35858 * 65.49504 * 17 14 6 19 19 N 1.46897 * 109.56542 * 185.55302 * 17 14 6 20 20 C 1.46899 * 111.00058 * 260.34610 * 19 17 14 21 21 C 1.52995 * 109.47355 * 174.71953 * 20 19 17 22 22 H 1.09005 * 109.47107 * 60.00230 * 21 20 19 23 23 O 1.42903 * 109.47125 * 300.00481 * 21 20 19 24 24 C 1.50696 * 109.47539 * 180.02562 * 21 20 19 25 25 H 1.08004 * 119.99883 * 0.02562 * 24 21 20 26 26 C 1.37871 * 120.00473 * 180.02562 * 24 21 20 27 27 N 1.31519 * 119.99999 * 359.97438 * 26 24 21 28 28 Si 1.86804 * 120.00263 * 180.02562 * 26 24 21 29 29 H 1.48502 * 109.47006 * 59.99855 * 28 26 24 30 30 H 1.48500 * 109.47141 * 180.02562 * 28 26 24 31 31 H 1.48503 * 109.47083 * 299.99820 * 28 26 24 32 32 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46552 * 299.97306 * 1 2 3 34 34 H 1.09003 * 109.47375 * 59.96535 * 1 2 3 35 35 H 1.08998 * 109.49933 * 58.66640 * 4 2 1 36 36 H 1.09000 * 109.49754 * 298.56550 * 4 2 1 37 37 H 1.08998 * 109.58759 * 294.84902 * 5 4 2 38 38 H 1.08995 * 109.58678 * 174.42098 * 5 4 2 39 39 H 1.09000 * 109.47039 * 299.99697 * 11 10 9 40 40 H 1.08996 * 109.47259 * 60.00210 * 11 10 9 41 41 H 1.09007 * 109.46844 * 180.02562 * 11 10 9 42 42 H 1.09007 * 109.47220 * 180.02562 * 12 10 9 43 43 H 1.08999 * 109.47316 * 299.99825 * 12 10 9 44 44 H 1.09000 * 109.47659 * 60.00017 * 12 10 9 45 45 H 1.09003 * 109.46621 * 300.00258 * 13 10 9 46 46 H 1.09003 * 109.46954 * 59.99377 * 13 10 9 47 47 H 1.08993 * 109.47279 * 179.97438 * 13 10 9 48 48 H 1.08996 * 109.47001 * 67.60471 * 16 14 6 49 49 H 1.08997 * 109.46967 * 187.60525 * 16 14 6 50 50 H 1.09006 * 109.47305 * 307.60457 * 16 14 6 51 51 H 1.00900 * 110.99804 * 24.29821 * 19 17 14 52 52 H 1.09005 * 109.47278 * 294.72454 * 20 19 17 53 53 H 1.09005 * 109.46825 * 54.72011 * 20 19 17 54 54 H 0.96707 * 113.99762 * 299.99584 * 23 21 20 55 55 H 0.96996 * 119.99828 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5712 -0.6887 -1.2644 6 7 4.0679 -1.2488 -0.0001 7 6 4.9613 -2.2579 -0.0001 8 8 5.4421 -2.6436 1.0471 9 8 5.3212 -2.8385 -1.1604 10 6 6.2885 -3.9187 -1.0847 11 6 5.7264 -5.0469 -0.2174 12 6 7.5871 -3.3980 -0.4655 13 6 6.5709 -4.4498 -2.4915 14 6 3.5672 -0.6922 1.2641 15 1 3.9098 0.3370 1.3714 16 6 4.0831 -1.5322 2.4343 17 6 2.0399 -0.7207 1.2501 18 1 1.6979 -1.7556 1.2384 19 7 1.5243 -0.0467 2.4492 20 6 1.1399 -1.0227 3.4775 21 6 0.7335 -0.2848 4.7546 22 1 -0.1110 0.3709 4.5423 23 8 1.8349 0.4945 5.2255 24 6 0.3398 -1.2861 5.8098 25 1 0.3762 -2.3432 5.5914 26 6 -0.0669 -0.8528 7.0538 27 7 -0.1108 0.4344 7.3199 28 14 -0.5543 -2.0941 8.3620 29 1 0.5972 -2.9861 8.6515 30 1 -0.9500 -1.3778 9.6011 31 1 -1.6981 -2.9053 7.8730 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3632 0.5134 0.8903 34 1 -0.3634 0.5144 -0.8897 35 1 1.6572 -0.2209 -2.1399 36 1 1.6977 -1.7557 -1.2383 37 1 3.9142 0.3408 -1.3676 38 1 3.9415 -1.2847 -2.0985 39 1 5.5250 -4.6687 0.7849 40 1 4.8013 -5.4178 -0.6585 41 1 6.4528 -5.8576 -0.1603 42 1 8.3135 -4.2088 -0.4091 43 1 7.9876 -2.5942 -1.0833 44 1 7.3857 -3.0198 0.5368 45 1 5.6456 -4.8208 -2.9323 46 1 6.9711 -3.6462 -3.1097 47 1 7.2974 -5.2604 -2.4348 48 1 5.1627 -1.4101 2.5210 49 1 3.6049 -1.2026 3.3567 50 1 3.8491 -2.5823 2.2589 51 1 2.1967 0.6132 2.8104 52 1 0.2998 -1.6172 3.1183 53 1 1.9845 -1.6784 3.6898 54 1 2.6233 -0.0250 5.4347 55 1 -0.3973 0.7392 8.1951 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930475575.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:52 Heat of formation + Delta-G solvation = -146.366522 kcal Electronic energy + Delta-G solvation = -32883.781874 eV Core-core repulsion = 28727.161209 eV Total energy + Delta-G solvation = -4156.620666 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18621 -40.42898 -38.35818 -37.74611 -36.07455 -34.87337 -34.68135 -34.22667 -32.11535 -29.75681 -29.50443 -28.35292 -28.27278 -27.48505 -25.53274 -24.60952 -23.33735 -22.52198 -22.03818 -21.06576 -20.27601 -19.04362 -18.50543 -17.63810 -17.41108 -16.99607 -16.67453 -16.48050 -16.24265 -15.78791 -15.65212 -15.44749 -15.34689 -15.03165 -14.61684 -14.54207 -14.34031 -14.27625 -13.82711 -13.49702 -13.36265 -13.24801 -13.19090 -13.08902 -12.97813 -12.92709 -12.82396 -12.76848 -12.72081 -12.68070 -12.48217 -12.42273 -12.09877 -12.08110 -12.01840 -11.80261 -11.47372 -11.41026 -11.31902 -10.97145 -10.70396 -10.43276 -10.12444 -9.88213 -9.08946 -8.13412 -6.38731 1.10629 1.39676 1.40907 1.49048 1.78878 2.38135 2.79944 3.12171 3.30961 3.61918 3.74706 3.78569 3.82190 3.96162 3.97252 4.01756 4.15240 4.27710 4.28563 4.44447 4.48612 4.54128 4.55666 4.58995 4.62162 4.67880 4.71312 4.76433 4.77414 4.84802 4.88403 4.89846 4.93597 4.99887 5.05330 5.09400 5.11634 5.14217 5.25603 5.28281 5.29729 5.35197 5.46400 5.50483 5.52620 5.61740 5.63397 5.76384 6.03514 6.22408 6.39474 6.54622 6.74580 7.32851 7.33276 7.53963 8.90714 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.002921 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.264589 B = 9584.952083 C =10846.476600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 H 0.078 0.922 4 C -0.122 4.122 5 C 0.110 3.890 6 N -0.590 5.590 7 C 0.645 3.355 8 O -0.581 6.581 9 O -0.367 6.367 10 C 0.127 3.873 11 C -0.180 4.180 12 C -0.178 4.178 13 C -0.133 4.133 14 C 0.144 3.856 15 H 0.084 0.916 16 C -0.131 4.131 17 C 0.088 3.912 18 H 0.054 0.946 19 N -0.668 5.668 20 C 0.053 3.947 21 C 0.236 3.764 22 H 0.025 0.975 23 O -0.575 6.575 24 C -0.588 4.588 25 H 0.055 0.945 26 C 0.028 3.972 27 N -0.896 5.896 28 Si 0.956 3.044 29 H -0.269 1.269 30 H -0.283 1.283 31 H -0.269 1.269 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.047 0.953 50 H 0.046 0.954 51 H 0.343 0.657 52 H 0.055 0.945 53 H 0.030 0.970 54 H 0.352 0.648 55 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -6.404 -24.313 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.012 4.012 6 N -0.331 5.331 7 C 0.400 3.600 8 O -0.472 6.472 9 O -0.282 6.282 10 C 0.090 3.910 11 C -0.238 4.238 12 C -0.235 4.235 13 C -0.190 4.190 14 C 0.041 3.959 15 H 0.102 0.898 16 C -0.188 4.188 17 C -0.024 4.024 18 H 0.072 0.928 19 N -0.299 5.299 20 C -0.077 4.077 21 C 0.178 3.822 22 H 0.042 0.958 23 O -0.378 6.378 24 C -0.626 4.626 25 H 0.073 0.927 26 C -0.175 4.175 27 N -0.533 5.533 28 Si 0.781 3.219 29 H -0.194 1.194 30 H -0.209 1.209 31 H -0.194 1.194 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.163 0.837 52 H 0.073 0.927 53 H 0.048 0.952 54 H 0.196 0.804 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.696 -5.882 -24.245 27.554 hybrid contribution 0.692 -1.348 1.755 2.319 sum 12.388 -7.231 -22.489 26.674 Atomic orbital electron populations 1.21607 0.94659 1.00873 1.01749 1.21097 0.96405 0.99561 0.92304 0.90358 1.21988 0.94281 1.01141 0.98605 1.21966 0.94670 1.00261 0.84259 1.47149 1.43117 1.34101 1.08706 1.18285 0.79564 0.79840 0.82316 1.90966 1.58080 1.66481 1.31709 1.86291 1.59809 1.49433 1.32627 1.22347 0.86328 0.83686 0.98613 1.22474 1.02003 0.98468 1.00808 1.22450 0.96435 1.02629 1.02002 1.21862 1.03271 1.02023 0.91888 1.21871 0.94330 0.97449 0.82276 0.89793 1.22183 1.01648 0.98988 0.95981 1.21939 0.90840 0.97470 0.92109 0.92768 1.60623 1.45806 1.17334 1.06157 1.22595 0.98622 0.93974 0.92470 1.19184 0.85335 0.89224 0.88470 0.95754 1.86522 1.24335 1.38856 1.88096 1.21978 1.47846 0.93680 0.99089 0.92706 1.25853 0.94168 0.96728 1.00737 1.70203 1.45613 1.15095 1.22418 0.85669 0.78951 0.79082 0.78203 1.19428 1.20866 1.19429 0.94273 0.93320 0.91478 0.87593 0.92439 0.89530 0.88116 0.92344 0.92337 0.89317 0.89397 0.91821 0.92198 0.91291 0.90908 0.88224 0.91331 0.93427 0.93467 0.83695 0.92654 0.95197 0.80368 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.02 71.98 0.65 -2.46 16 2 C -0.07 -1.63 2.41 -10.77 -0.03 -1.66 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -2.00 5.36 30.67 0.16 -1.84 16 5 C 0.11 1.83 6.46 86.36 0.56 2.39 16 6 N -0.59 -13.98 2.98 -926.03 -2.76 -16.74 16 7 C 0.64 17.14 7.53 129.79 0.98 18.11 16 8 O -0.58 -18.11 7.46 19.80 0.15 -17.96 16 9 O -0.37 -8.21 8.53 -55.54 -0.47 -8.68 16 10 C 0.13 2.31 1.13 -10.79 -0.01 2.30 16 11 C -0.18 -3.56 8.37 71.98 0.60 -2.96 16 12 C -0.18 -3.25 8.37 71.98 0.60 -2.64 16 13 C -0.13 -1.50 8.85 71.98 0.64 -0.87 16 14 C 0.14 3.83 2.80 44.83 0.13 3.96 16 15 H 0.08 2.13 8.02 -2.39 -0.02 2.11 16 16 C -0.13 -4.11 6.92 71.98 0.50 -3.61 16 17 C 0.09 2.43 1.68 44.85 0.08 2.51 16 18 H 0.05 1.71 7.66 -2.39 -0.02 1.70 16 19 N -0.67 -22.68 5.29 -491.91 -2.60 -25.28 16 20 C 0.05 2.16 4.64 86.30 0.40 2.56 16 21 C 0.24 12.05 3.09 29.85 0.09 12.14 16 22 H 0.02 1.43 8.14 -2.38 -0.02 1.41 16 23 O -0.57 -29.20 11.98 -148.98 -1.79 -30.99 16 24 C -0.59 -32.68 8.76 25.60 0.22 -32.46 16 25 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 26 C 0.03 1.58 5.40 84.65 0.46 2.03 16 27 N -0.90 -54.02 12.84 21.45 0.28 -53.75 16 28 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 31 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.43 7.57 -2.39 -0.02 1.41 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.50 6.92 -2.39 -0.02 1.48 16 39 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 2.24 6.67 -2.39 -0.02 2.22 16 49 H 0.05 1.60 5.50 -2.39 -0.01 1.58 16 50 H 0.05 1.63 6.83 -2.38 -0.02 1.62 16 51 H 0.34 11.92 7.38 -89.69 -0.66 11.26 16 52 H 0.05 2.33 8.14 -2.38 -0.02 2.32 16 53 H 0.03 1.22 5.59 -2.38 -0.01 1.21 16 54 H 0.35 16.04 9.04 -74.05 -0.67 15.37 16 55 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.06 411.86 0.40 -66.66 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.45 Total: 43.18 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.03 Total: -2.49 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -5.09 Total: -95.77 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -2.11 Total: -57.64 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.06 0.40 -66.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930475575.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.706 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds