Wall clock time and date at job start Wed Apr 1 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00240 * 2 1 4 4 C 1.53000 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46702 * 305.00073 * 4 3 2 6 6 C 1.52998 * 109.47061 * 64.99889 * 4 3 2 7 7 C 1.52994 * 109.47042 * 184.99893 * 4 3 2 8 8 H 1.08997 * 109.47519 * 299.99680 * 7 4 3 9 9 C 1.52998 * 109.47195 * 60.00078 * 7 4 3 10 10 C 1.50709 * 109.46927 * 179.97438 * 7 4 3 11 11 O 1.21280 * 119.99581 * 328.99939 * 10 7 4 12 12 N 1.34770 * 119.99778 * 149.27368 * 10 7 4 13 13 C 1.46931 * 120.63442 * 4.20708 * 12 10 7 14 14 C 1.53621 * 108.54204 * 126.36623 * 13 12 10 15 15 C 1.53046 * 109.24336 * 54.85915 * 14 13 12 16 16 N 1.46497 * 109.45955 * 178.48654 * 15 14 13 17 17 C 1.36941 * 120.00001 * 58.75254 * 16 15 14 18 18 H 1.07995 * 119.99708 * 321.70245 * 17 16 15 19 19 C 1.38805 * 119.99934 * 141.70473 * 17 16 15 20 20 N 1.31619 * 120.00404 * 338.47557 * 19 17 16 21 21 Si 1.86801 * 120.00026 * 158.47558 * 19 17 16 22 22 H 1.48498 * 109.47235 * 89.99590 * 21 19 17 23 23 H 1.48497 * 109.47101 * 210.00134 * 21 19 17 24 24 H 1.48498 * 109.46919 * 329.99827 * 21 19 17 25 25 C 1.46499 * 119.99928 * 238.74362 * 16 15 14 26 26 C 1.53004 * 109.46722 * 90.00804 * 25 16 15 27 27 O 1.42902 * 109.47413 * 64.99708 * 26 25 16 28 28 C 1.53038 * 109.53745 * 298.51076 * 15 14 13 29 29 C 1.46926 * 120.63005 * 184.48651 * 12 10 7 30 30 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46837 * 300.00154 * 1 2 3 32 32 H 1.08994 * 109.47303 * 59.99706 * 1 2 3 33 33 H 1.09002 * 109.46907 * 59.99880 * 3 2 1 34 34 H 1.09004 * 109.47176 * 300.00225 * 3 2 1 35 35 H 1.09009 * 109.47186 * 300.00529 * 6 4 3 36 36 H 1.08998 * 109.47471 * 59.99759 * 6 4 3 37 37 H 1.09000 * 109.47467 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46994 * 53.63869 * 9 7 4 39 39 H 1.09002 * 109.46949 * 173.63483 * 9 7 4 40 40 H 1.08996 * 109.47446 * 293.63501 * 9 7 4 41 41 H 1.09000 * 109.58829 * 246.19926 * 13 12 10 42 42 H 1.09005 * 109.58442 * 6.62634 * 13 12 10 43 43 H 1.09000 * 109.63599 * 294.87010 * 14 13 12 44 44 H 1.09003 * 109.43294 * 174.72371 * 14 13 12 45 45 H 1.08998 * 109.44456 * 58.52169 * 15 14 13 46 46 H 0.97003 * 120.00494 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47030 * 210.00188 * 25 16 15 48 48 H 1.09000 * 109.47529 * 330.01117 * 25 16 15 49 49 H 1.09000 * 109.46921 * 184.99791 * 26 25 16 50 50 H 1.09002 * 109.46592 * 304.99439 * 26 25 16 51 51 H 0.96702 * 113.99672 * 180.02562 * 27 26 25 52 52 H 1.09006 * 109.49731 * 301.41134 * 28 15 14 53 53 H 1.08998 * 109.52662 * 181.33353 * 28 15 14 54 54 H 1.09000 * 109.58433 * 353.37812 * 29 12 10 55 55 H 1.08997 * 109.58826 * 113.65482 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5681 0.8409 6 6 3.9952 0.5368 -1.3083 7 6 4.1574 2.5768 0.1250 8 1 3.8415 3.1932 -0.7165 9 6 3.6977 3.2246 1.4327 10 6 5.6598 2.4577 0.1250 11 8 6.1896 1.4687 0.5855 12 7 6.4145 3.4526 -0.3816 13 6 5.7934 4.6979 -0.8532 14 6 6.4765 5.8811 -0.1508 15 6 7.9867 5.8040 -0.3865 16 7 8.6393 6.9502 0.2510 17 6 8.5034 7.1532 1.5984 18 1 7.5581 6.9553 2.0816 19 6 9.5806 7.6135 2.3431 20 7 10.8071 7.4588 1.8913 21 14 9.2896 8.4526 3.9864 22 1 9.2944 7.4361 5.0690 23 1 10.3670 9.4442 4.2336 24 1 7.9759 9.1446 3.9631 25 6 9.4375 7.8791 -0.5529 26 6 8.5406 9.0046 -1.0721 27 8 8.0584 9.7763 0.0297 28 6 8.5330 4.5069 0.2144 29 6 7.8737 3.3103 -0.4786 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.5521 -0.4551 -1.3979 36 1 3.6792 1.1532 -2.1499 37 1 5.0818 0.4503 -1.3086 38 1 3.9133 2.5549 2.2653 39 1 4.2271 4.1663 1.5774 40 1 2.6253 3.4140 1.3870 41 1 5.9232 4.7853 -1.9319 42 1 4.7308 4.6909 -0.6102 43 1 6.2728 5.8391 0.9192 44 1 6.0920 6.8160 -0.5585 45 1 8.1881 5.8210 -1.4576 46 1 11.5599 7.7801 2.4119 47 1 10.2318 8.3019 0.0622 48 1 9.8760 7.3456 -1.3963 49 1 9.1135 9.6461 -1.7418 50 1 7.6966 8.5764 -1.6129 51 1 7.4815 10.5091 -0.2259 52 1 8.3099 4.4779 1.2810 53 1 9.6121 4.4634 0.0673 54 1 8.1841 2.3875 0.0115 55 1 8.1694 3.2843 -1.5274 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098390344.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:46 Heat of formation + Delta-G solvation = -139.689265 kcal Electronic energy + Delta-G solvation = -32362.771730 eV Core-core repulsion = 28206.440612 eV Total energy + Delta-G solvation = -4156.331118 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52247 -39.45634 -38.80577 -37.63704 -36.36902 -36.17980 -33.76693 -32.46032 -31.83867 -31.20176 -29.37145 -28.34176 -26.79759 -26.26573 -25.44220 -24.58697 -23.87476 -22.43081 -21.85220 -21.01292 -19.64725 -18.64978 -18.13362 -17.90570 -17.47582 -16.88265 -16.72012 -16.48611 -16.30024 -16.03875 -15.78766 -15.54590 -15.14162 -15.01213 -14.67190 -14.65465 -14.50803 -14.29952 -14.04810 -13.82949 -13.42311 -13.29722 -13.22799 -13.09345 -13.01998 -12.96064 -12.71166 -12.55720 -12.54033 -12.37806 -12.34833 -12.09869 -11.85822 -11.80312 -11.77654 -11.61869 -11.54545 -11.42763 -11.10859 -10.66311 -10.55750 -10.46776 -10.36041 -9.57461 -8.41605 -7.71375 -5.29205 1.42912 1.46347 1.55075 1.65274 2.03498 2.57582 2.89870 3.38358 3.46832 3.59189 3.77302 3.87988 3.92078 3.98956 4.11017 4.20134 4.27312 4.31022 4.34695 4.44820 4.48544 4.48839 4.54431 4.59694 4.62104 4.65324 4.67863 4.74748 4.80712 4.82046 4.83958 4.85348 4.90175 4.91025 4.93164 4.96517 5.05129 5.11033 5.15537 5.22899 5.28573 5.32953 5.36092 5.51244 5.64361 5.70288 5.77708 5.88022 6.30799 6.50894 6.57821 7.22934 7.25865 7.33190 8.01057 8.49539 9.24682 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.002659 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.994122 B =10526.025056 C =10726.281207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.068 3.932 4 C -0.071 4.071 5 H 0.058 0.942 6 C -0.140 4.140 7 C -0.096 4.096 8 H 0.125 0.875 9 C -0.145 4.145 10 C 0.516 3.484 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.111 3.889 14 C -0.127 4.127 15 C 0.172 3.828 16 N -0.584 5.584 17 C -0.215 4.215 18 H 0.043 0.957 19 C -0.034 4.034 20 N -0.922 5.922 21 Si 0.940 3.060 22 H -0.294 1.294 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.136 3.864 26 C 0.071 3.929 27 O -0.575 6.575 28 C -0.120 4.120 29 C 0.122 3.878 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.243 0.757 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.043 0.957 50 H 0.044 0.956 51 H 0.373 0.627 52 H 0.028 0.972 53 H 0.046 0.954 54 H 0.064 0.936 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.314 -6.171 -11.825 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.008 4.008 4 C -0.090 4.090 5 H 0.077 0.923 6 C -0.197 4.197 7 C -0.117 4.117 8 H 0.143 0.857 9 C -0.202 4.202 10 C 0.306 3.694 11 O -0.469 6.469 12 N -0.338 5.338 13 C -0.011 4.011 14 C -0.167 4.167 15 C 0.066 3.934 16 N -0.304 5.304 17 C -0.346 4.346 18 H 0.060 0.940 19 C -0.230 4.230 20 N -0.568 5.568 21 Si 0.770 3.230 22 H -0.222 1.222 23 H -0.224 1.224 24 H -0.200 1.200 25 C 0.010 3.990 26 C -0.008 4.008 27 O -0.380 6.380 28 C -0.160 4.160 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.219 0.781 52 H 0.047 0.953 53 H 0.064 0.936 54 H 0.083 0.917 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.401 -7.219 -11.192 23.532 hybrid contribution 0.419 1.102 1.171 1.662 sum -18.982 -6.117 -10.021 22.320 Atomic orbital electron populations 1.22905 0.79552 1.03595 1.00965 1.87846 1.21330 1.28848 1.95626 1.22654 0.91764 0.84571 1.01847 1.20853 0.94058 0.94575 0.99471 0.92319 1.21741 1.00126 1.01278 0.96562 1.21339 0.89444 0.98566 1.02330 0.85688 1.21844 1.03404 1.00265 0.94722 1.21123 0.90635 0.81744 0.75895 1.90649 1.75491 1.33041 1.47761 1.48262 1.07088 1.16943 1.61500 1.22133 0.98229 0.81128 0.99625 1.22238 0.96434 0.97960 1.00049 1.20554 0.91879 0.85772 0.95212 1.43905 1.58229 1.24476 1.03771 1.18691 0.92881 1.38290 0.84713 0.93972 1.25549 0.95040 1.02720 0.99715 1.70092 0.97658 1.49197 1.39836 0.85714 0.77065 0.78452 0.81738 1.22178 1.22438 1.20040 1.20976 0.94309 0.89914 0.93798 1.22846 0.97036 0.93185 0.87783 1.86801 1.69475 1.46850 1.34882 1.22106 0.98921 0.95872 0.99124 1.21504 0.79645 0.98041 1.00964 0.89041 0.93274 0.92792 0.91698 0.91073 0.92325 0.91015 0.94537 0.93463 0.92292 0.88177 0.88732 0.87255 0.94230 0.90470 0.91351 0.94737 0.92538 0.93226 0.93938 0.93743 0.78052 0.95326 0.93573 0.91720 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.96 10.24 -148.98 -1.53 -9.48 16 3 C 0.07 1.06 5.10 71.98 0.37 1.43 16 4 C -0.07 -1.48 1.87 -10.80 -0.02 -1.50 16 5 H 0.06 1.61 7.85 -2.39 -0.02 1.59 16 6 C -0.14 -2.97 8.82 71.98 0.63 -2.34 16 7 C -0.10 -1.92 1.48 -11.54 -0.02 -1.94 16 8 H 0.13 1.69 6.36 -2.39 -0.02 1.68 16 9 C -0.14 -2.75 8.45 71.98 0.61 -2.14 16 10 C 0.52 15.13 5.79 87.66 0.51 15.63 16 11 O -0.59 -22.50 14.85 -3.03 -0.04 -22.55 16 12 N -0.61 -16.90 2.97 -818.06 -2.43 -19.32 16 13 C 0.11 2.38 6.19 86.51 0.54 2.91 16 14 C -0.13 -3.84 5.29 30.82 0.16 -3.67 16 15 C 0.17 6.32 2.59 45.02 0.12 6.44 16 16 N -0.58 -26.83 2.34 -677.89 -1.58 -28.42 16 17 C -0.21 -11.46 7.75 84.03 0.65 -10.81 16 18 H 0.04 2.33 6.86 -2.91 -0.02 2.31 16 19 C -0.03 -1.94 4.94 84.86 0.42 -1.53 16 20 N -0.92 -54.80 11.53 21.65 0.25 -54.55 16 21 Si 0.94 47.06 29.61 68.60 2.03 49.09 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 C 0.14 6.01 5.69 86.38 0.49 6.50 16 26 C 0.07 2.50 7.39 71.98 0.53 3.03 16 27 O -0.58 -22.41 13.13 -148.98 -1.96 -24.37 16 28 C -0.12 -4.72 5.33 30.67 0.16 -4.56 16 29 C 0.12 3.88 6.44 86.36 0.56 4.44 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.86 6.32 -2.39 -0.02 0.85 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.28 7.82 -2.38 -0.02 1.26 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 0.95 6.68 -2.39 -0.02 0.94 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.23 7.90 -2.39 -0.02 1.22 16 40 H 0.10 1.23 6.67 -2.39 -0.02 1.22 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 1.71 5.27 -2.38 -0.01 1.70 16 43 H 0.04 1.44 7.02 -2.39 -0.02 1.42 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 2.22 7.80 -2.39 -0.02 2.20 16 46 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.06 3.04 5.58 -2.39 -0.01 3.03 16 48 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 49 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.37 10.04 9.12 -74.06 -0.68 9.37 16 52 H 0.03 1.33 7.73 -2.38 -0.02 1.32 16 53 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 54 H 0.06 2.32 7.00 -2.39 -0.02 2.30 16 55 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -75.82 420.03 1.89 -73.93 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.19 Total: 22.23 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.96 Total: 13.44 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -3.76 Total: -102.29 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -3.53 Total: -56.40 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -75.82 1.89 -73.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098390344.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.759 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds