Wall clock time and date at job start Wed Apr 1 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.52996 * 109.47499 * 120.00486 * 2 1 3 5 5 C 1.52992 * 109.47341 * 65.00051 * 4 2 1 6 6 O 1.42898 * 109.47408 * 180.02562 * 5 4 2 7 7 C 1.42904 * 114.00169 * 180.02562 * 6 5 4 8 8 H 1.08993 * 109.47349 * 29.99786 * 7 6 5 9 9 C 1.52999 * 109.46680 * 269.99762 * 7 6 5 10 10 C 1.50701 * 109.47320 * 150.00244 * 7 6 5 11 11 O 1.21276 * 119.99925 * 4.99349 * 10 7 6 12 12 N 1.34777 * 120.00071 * 184.99942 * 10 7 6 13 13 C 1.46492 * 120.00139 * 179.97438 * 12 10 7 14 14 C 1.53002 * 109.47311 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.40442 * 305.00327 * 14 13 12 16 16 C 1.54295 * 109.40322 * 185.16387 * 14 13 12 17 17 N 1.48185 * 110.69098 * 200.49124 * 16 14 13 18 18 C 1.36941 * 118.50961 * 138.77187 * 17 16 14 19 19 H 1.07989 * 120.00279 * 319.23422 * 18 17 16 20 20 C 1.38814 * 119.99520 * 139.23742 * 18 17 16 21 21 N 1.31613 * 120.00144 * 156.53944 * 20 18 17 22 22 Si 1.86801 * 120.00128 * 336.53533 * 20 18 17 23 23 H 1.48502 * 109.47170 * 95.52029 * 22 20 18 24 24 H 1.48494 * 109.47380 * 215.52419 * 22 20 18 25 25 H 1.48504 * 109.46803 * 335.52375 * 22 20 18 26 26 C 1.44461 * 122.97298 * 318.80259 * 17 16 14 27 27 C 1.54864 * 109.33214 * 88.91084 * 26 17 16 28 28 C 1.47696 * 109.67934 * 290.10110 * 27 26 17 29 29 O 1.40522 * 109.40096 * 64.84053 * 14 13 12 30 30 H 1.08994 * 109.47807 * 59.99534 * 1 2 3 31 31 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46855 * 299.99023 * 1 2 3 33 33 H 1.09003 * 109.46855 * 240.00977 * 2 1 3 34 34 H 1.09005 * 109.46758 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47420 * 300.00258 * 3 2 1 36 36 H 1.09000 * 109.47270 * 60.01054 * 3 2 1 37 37 H 1.09001 * 109.46980 * 185.00078 * 4 2 1 38 38 H 1.09002 * 109.47071 * 304.99874 * 4 2 1 39 39 H 1.09001 * 109.47105 * 299.99949 * 5 4 2 40 40 H 1.09002 * 109.47183 * 59.99891 * 5 4 2 41 41 H 1.09002 * 109.47546 * 59.99894 * 9 7 6 42 42 H 1.09002 * 109.47317 * 180.02562 * 9 7 6 43 43 H 1.09001 * 109.47385 * 299.99451 * 9 7 6 44 44 H 0.97003 * 119.99528 * 359.97438 * 12 10 7 45 45 H 1.09006 * 109.47293 * 300.00317 * 13 12 10 46 46 H 1.09004 * 109.46975 * 60.00040 * 13 12 10 47 47 H 1.08996 * 109.23678 * 320.80482 * 16 14 13 48 48 H 1.09000 * 109.23299 * 80.22232 * 16 14 13 49 49 H 0.97001 * 120.00329 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.48899 * 208.86705 * 26 17 16 51 51 H 1.08999 * 109.49074 * 328.94732 * 26 17 16 52 52 H 1.08998 * 109.44145 * 50.16282 * 27 26 17 53 53 H 1.09004 * 109.43895 * 170.03988 * 27 26 17 54 54 H 1.08998 * 108.64187 * 181.88106 * 28 27 26 55 55 H 1.08993 * 108.64259 * 299.71876 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6354 -2.1955 1.1878 6 8 2.1113 -2.8691 2.3547 7 6 1.7854 -4.2598 2.3967 8 1 1.7269 -4.6501 1.3807 9 6 0.4360 -4.4465 3.0932 10 6 2.8516 -5.0029 3.1597 11 8 3.7490 -4.3910 3.6991 12 7 2.8078 -6.3474 3.2425 13 6 3.8445 -7.0697 3.9837 14 6 3.5616 -8.5722 3.9233 15 1 2.5522 -8.7655 4.2864 16 6 4.5778 -9.3212 4.8103 17 7 4.6672 -10.7466 4.4151 18 6 5.9018 -11.3378 4.3759 19 1 6.7477 -10.7958 3.9799 20 6 6.0658 -12.6339 4.8451 21 7 7.0701 -13.3675 4.4147 22 14 4.8610 -13.3369 6.0876 23 1 3.8156 -14.1164 5.3771 24 1 5.5853 -14.2254 7.0314 25 1 4.2242 -12.2274 6.8419 26 6 3.5111 -11.5404 4.0686 27 6 3.2308 -11.4032 2.5517 28 6 2.7415 -10.0410 2.2576 29 8 3.6725 -9.0149 2.5942 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.1264 -0.6443 1.2950 38 1 1.6055 -0.2619 2.1369 39 1 0.5491 -2.2725 1.1419 40 1 2.0700 -2.6549 0.3000 41 1 -0.3353 -3.9091 2.5414 42 1 0.1875 -5.5074 3.1257 43 1 0.4945 -4.0563 4.1093 44 1 2.0898 -6.8367 2.8112 45 1 4.8185 -6.8648 3.5393 46 1 3.8432 -6.7417 5.0232 47 1 5.5582 -8.8569 4.7039 48 1 4.2614 -9.2571 5.8514 49 1 7.1845 -14.2733 4.7423 50 1 3.7022 -12.5860 4.3101 51 1 2.6465 -11.1888 4.6316 52 1 4.1497 -11.5865 1.9950 53 1 2.4762 -12.1316 2.2549 54 1 2.5181 -9.9734 1.1929 55 1 1.8201 -9.8737 2.8153 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150830726.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:07 Heat of formation + Delta-G solvation = -140.884188 kcal Electronic energy + Delta-G solvation = -30808.569991 eV Core-core repulsion = 26652.187057 eV Total energy + Delta-G solvation = -4156.382934 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.18946 -40.35492 -39.02510 -37.17028 -37.02295 -35.97482 -33.98426 -33.76826 -32.59833 -30.50911 -29.91890 -28.00512 -27.58529 -27.06251 -25.38907 -24.13715 -23.57863 -22.55457 -21.90387 -21.29200 -20.77272 -18.74144 -18.47500 -18.12124 -17.80643 -17.41716 -17.00078 -16.71503 -16.46856 -16.11230 -15.77263 -15.63355 -15.22483 -15.18148 -14.97001 -14.74650 -14.54512 -14.23893 -14.11296 -14.08083 -13.77497 -13.57703 -13.51543 -13.29492 -13.24161 -13.07153 -12.76843 -12.69565 -12.66444 -12.39576 -12.28168 -12.27475 -11.89644 -11.81546 -11.70369 -11.56542 -11.51320 -11.50047 -11.37551 -10.99338 -10.63368 -10.51397 -10.33562 -10.15934 -8.68214 -8.20944 -5.60457 1.29666 1.41329 1.52742 1.55961 1.80503 2.41395 2.83626 2.88092 3.04769 3.31156 3.64703 3.89443 3.92091 3.99390 4.00180 4.03803 4.06006 4.10391 4.11755 4.17978 4.31743 4.33784 4.44262 4.52985 4.54953 4.57739 4.62478 4.69105 4.75212 4.76530 4.78930 4.83255 4.83779 4.93495 5.00967 5.02173 5.02859 5.09174 5.12596 5.12770 5.17508 5.21723 5.31757 5.35137 5.45786 5.48564 5.50313 5.96577 6.12200 6.17572 6.52316 6.54567 7.05048 7.20882 7.66127 8.00819 8.99171 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.001821 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.709695 B =15375.657295 C =15568.328936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.074 3.926 8 H 0.113 0.887 9 C -0.163 4.163 10 C 0.507 3.493 11 O -0.577 6.577 12 N -0.704 5.704 13 C 0.132 3.868 14 C 0.081 3.919 15 H 0.090 0.910 16 C 0.122 3.878 17 N -0.607 5.607 18 C -0.263 4.263 19 H 0.025 0.975 20 C -0.019 4.019 21 N -0.948 5.948 22 Si 0.949 3.051 23 H -0.269 1.269 24 H -0.309 1.309 25 H -0.258 1.258 26 C 0.134 3.866 27 C -0.172 4.172 28 C 0.072 3.928 29 O -0.377 6.377 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.416 0.584 45 H 0.051 0.949 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.263 0.737 50 H 0.032 0.968 51 H 0.066 0.934 52 H 0.034 0.966 53 H 0.091 0.909 54 H 0.096 0.904 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.181 22.362 -8.974 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.021 4.021 6 O -0.310 6.310 7 C 0.013 3.987 8 H 0.130 0.870 9 C -0.221 4.221 10 C 0.294 3.706 11 O -0.456 6.456 12 N -0.358 5.358 13 C 0.007 3.993 14 C 0.021 3.979 15 H 0.108 0.892 16 C -0.003 4.003 17 N -0.331 5.331 18 C -0.393 4.393 19 H 0.043 0.957 20 C -0.215 4.215 21 N -0.592 5.592 22 Si 0.776 3.224 23 H -0.196 1.196 24 H -0.237 1.237 25 H -0.182 1.182 26 C 0.009 3.991 27 C -0.212 4.212 28 C -0.004 4.004 29 O -0.296 6.296 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.253 0.747 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.050 0.950 51 H 0.084 0.916 52 H 0.053 0.947 53 H 0.110 0.890 54 H 0.114 0.886 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.248 22.860 -8.557 33.027 hybrid contribution 0.263 -1.328 0.464 1.431 sum -21.986 21.533 -8.093 31.820 Atomic orbital electron populations 1.21921 0.94216 1.02333 1.02242 1.21040 0.96690 0.96336 0.96930 1.21836 1.00904 0.95524 1.02267 1.21569 1.01108 0.93196 0.99177 1.22880 0.99404 0.93092 0.86740 1.88012 1.79299 1.20028 1.43683 1.21999 0.93088 0.82956 1.00658 0.86957 1.22229 0.94070 1.04498 1.01305 1.21105 0.86412 0.82491 0.80622 1.90707 1.38158 1.68602 1.48105 1.45654 1.29446 1.05692 1.54967 1.21314 0.91404 0.89384 0.97151 1.22599 0.99680 0.91509 0.84069 0.89198 1.22034 0.98584 0.83748 0.95983 1.43871 1.02972 1.07620 1.78653 1.18608 0.87835 0.97914 1.34970 0.95727 1.26171 0.98423 0.97489 0.99453 1.70035 1.35346 1.09345 1.44475 0.85771 0.78682 0.77939 0.79977 1.19602 1.23712 1.18191 1.21262 0.89102 0.94494 0.94253 1.22099 1.01155 0.99304 0.98679 1.21557 0.90719 0.86437 1.01692 1.87489 1.60931 1.54029 1.27126 0.91887 0.91949 0.92648 0.90718 0.93049 0.91633 0.92641 0.92671 0.91602 0.90771 0.92651 0.89236 0.88717 0.92668 0.74651 0.93006 0.89718 0.93791 0.93783 0.92818 0.94978 0.91569 0.94665 0.89037 0.88565 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 71.98 0.64 -0.57 16 2 C -0.09 -0.96 2.92 -10.80 -0.03 -0.99 16 3 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 4 C -0.11 -1.67 5.05 30.59 0.15 -1.51 16 5 C 0.05 0.80 5.50 71.98 0.40 1.20 16 6 O -0.39 -8.79 9.53 -129.99 -1.24 -10.03 16 7 C 0.07 1.29 3.13 29.85 0.09 1.38 16 8 H 0.11 1.32 7.79 -2.39 -0.02 1.30 16 9 C -0.16 -1.83 9.48 71.98 0.68 -1.15 16 10 C 0.51 12.98 7.18 87.66 0.63 13.61 16 11 O -0.58 -21.21 16.51 15.97 0.26 -20.94 16 12 N -0.70 -14.97 5.46 -463.07 -2.53 -17.49 16 13 C 0.13 3.55 5.24 86.38 0.45 4.01 16 14 C 0.08 2.29 2.35 31.03 0.07 2.36 16 15 H 0.09 1.96 7.20 -2.39 -0.02 1.94 16 16 C 0.12 4.62 6.12 86.49 0.53 5.15 16 17 N -0.61 -27.93 2.11 -696.47 -1.47 -29.40 16 18 C -0.26 -15.18 9.67 84.03 0.81 -14.36 16 19 H 0.03 1.64 8.06 -2.92 -0.02 1.61 16 20 C -0.02 -1.10 5.20 84.86 0.44 -0.66 16 21 N -0.95 -59.88 13.97 21.65 0.30 -59.58 16 22 Si 0.95 45.54 25.27 68.60 1.73 47.27 16 23 H -0.27 -12.07 6.71 99.48 0.67 -11.40 16 24 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 26 C 0.13 5.28 4.47 87.40 0.39 5.67 16 27 C -0.17 -5.72 6.03 29.57 0.18 -5.54 16 28 C 0.07 1.82 6.04 70.32 0.42 2.25 16 29 O -0.38 -11.77 9.77 -144.89 -1.42 -13.19 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.43 6.56 -2.39 -0.02 0.41 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.74 6.29 -2.39 -0.02 0.73 16 40 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 41 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 42 H 0.09 0.63 7.92 -2.39 -0.02 0.61 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.42 5.96 8.24 -92.71 -0.76 5.19 16 45 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.04 1.84 7.75 -2.39 -0.02 1.82 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.03 1.42 3.66 -2.39 -0.01 1.42 16 51 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 52 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 54 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 55 H 0.08 1.37 7.27 -2.39 -0.02 1.35 16 Total: -1.00 -80.39 425.30 2.23 -78.16 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.04 Total: 15.22 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.53 Total: 9.99 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.69 Total: -106.48 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.39 Total: -44.16 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.73 Total: 47.27 kcal Total: -80.39 2.23 -78.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150830726.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.724 kcal (2) G-P(sol) polarization free energy of solvation -80.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds