Wall clock time and date at job start Wed Apr 1 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99380 * 2 1 4 4 C 1.53005 * 109.46882 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47018 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47099 * 54.99665 * 5 4 3 7 7 C 1.53005 * 109.46906 * 294.99943 * 5 4 3 8 8 C 1.50700 * 109.46847 * 174.99998 * 5 4 3 9 9 O 1.21274 * 120.00302 * 359.97438 * 8 5 4 10 10 N 1.34773 * 119.99546 * 179.97438 * 8 5 4 11 11 C 1.46501 * 119.99923 * 180.02562 * 10 8 5 12 12 C 1.53000 * 109.47223 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46069 * 60.02345 * 12 11 10 14 14 O 1.42896 * 109.47513 * 299.97254 * 13 12 11 15 15 C 1.42896 * 114.00119 * 180.02562 * 14 13 12 16 16 C 1.53045 * 109.45877 * 180.02562 * 12 11 10 17 17 C 1.53189 * 109.31558 * 58.65342 * 16 12 11 18 18 N 1.46927 * 108.77596 * 54.63264 * 17 16 12 19 19 C 1.36937 * 120.62634 * 126.37089 * 18 17 16 20 20 H 1.07997 * 120.00342 * 332.15811 * 19 18 17 21 21 C 1.38808 * 119.99653 * 151.89331 * 19 18 17 22 22 N 1.31615 * 119.99878 * 343.01147 * 21 19 18 23 23 Si 1.86804 * 120.00113 * 163.02023 * 21 19 18 24 24 H 1.48499 * 109.47394 * 94.07396 * 23 21 19 25 25 H 1.48497 * 109.47180 * 214.07698 * 23 21 19 26 26 H 1.48498 * 109.46774 * 334.07706 * 23 21 19 27 27 C 1.46921 * 118.74117 * 306.64796 * 18 17 16 28 28 C 1.52764 * 109.00826 * 53.30371 * 27 18 17 29 29 H 1.08995 * 109.47238 * 60.00192 * 1 2 3 30 30 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47298 * 299.99554 * 1 2 3 32 32 H 1.09000 * 109.46869 * 60.00260 * 3 2 1 33 33 H 1.08993 * 109.47235 * 300.00073 * 3 2 1 34 34 H 1.08998 * 109.46804 * 59.99745 * 4 3 2 35 35 H 1.09000 * 109.46892 * 299.99928 * 4 3 2 36 36 H 1.08999 * 109.46892 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.46716 * 299.99995 * 7 5 4 38 38 H 1.08994 * 109.47049 * 59.99918 * 7 5 4 39 39 H 0.97008 * 120.00555 * 359.97438 * 10 8 5 40 40 H 1.09003 * 109.47480 * 59.99824 * 11 10 8 41 41 H 1.09004 * 109.46824 * 299.99803 * 11 10 8 42 42 H 1.09001 * 109.47147 * 59.97862 * 13 12 11 43 43 H 1.09003 * 109.46672 * 179.97438 * 13 12 11 44 44 H 1.09003 * 109.46745 * 180.02562 * 15 14 13 45 45 H 1.09005 * 109.47033 * 299.99899 * 15 14 13 46 46 H 1.08992 * 109.47199 * 60.00286 * 15 14 13 47 47 H 1.09006 * 109.49266 * 298.70016 * 16 12 11 48 48 H 1.09003 * 109.52173 * 178.62451 * 16 12 11 49 49 H 1.09002 * 109.58362 * 294.84721 * 17 16 12 50 50 H 1.09000 * 109.70426 * 174.49640 * 17 16 12 51 51 H 0.97005 * 120.00167 * 180.02562 * 22 21 19 52 52 H 1.08997 * 109.58753 * 173.14526 * 27 18 17 53 53 H 1.09000 * 109.58571 * 293.56740 * 27 18 17 54 54 H 1.09002 * 109.56043 * 185.55481 * 28 27 18 55 55 H 1.08997 * 109.38623 * 65.52180 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 6 4.1576 2.5827 0.0000 6 1 3.7671 3.1538 0.8423 7 6 3.8075 3.2973 -1.3068 8 6 5.6550 2.4658 0.1232 9 8 6.1734 1.3724 0.2031 10 7 6.4180 3.5766 0.1446 11 6 7.8737 3.4631 0.2638 12 6 8.4959 4.8609 0.2645 13 6 7.9486 5.6618 1.4477 14 8 6.5287 5.7730 1.3316 15 6 5.9146 6.5076 2.3923 16 6 10.0167 4.7420 0.3884 17 6 10.5568 3.9108 -0.7796 18 7 10.0992 4.5124 -2.0395 19 6 10.9952 4.8412 -3.0214 20 1 12.0128 5.0932 -2.7616 21 6 10.5971 4.8454 -4.3512 22 7 9.4919 4.2269 -4.7091 23 14 11.6301 5.7287 -5.6327 24 1 12.5662 4.7644 -6.2643 25 1 10.7410 6.3083 -6.6714 26 1 12.4041 6.8156 -4.9811 27 6 8.6627 4.7601 -2.2234 28 6 8.1433 5.5766 -1.0414 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8566 0.6441 -0.8908 35 1 3.8574 0.6438 0.8891 36 1 4.2512 4.2929 -1.3066 37 1 4.1980 2.7261 -2.1490 38 1 2.7245 3.3817 -1.3959 39 1 6.0034 4.4513 0.0803 40 1 8.2639 2.8918 -0.5786 41 1 8.1234 2.9542 1.1948 42 1 8.1983 5.1520 2.3782 43 1 8.3921 6.6575 1.4486 44 1 4.8372 6.5463 2.2312 45 1 6.1221 6.0156 3.3427 46 1 6.3159 7.5208 2.4124 47 1 10.2678 4.2530 1.3297 48 1 10.4630 5.7362 0.3645 49 1 10.1826 2.8897 -0.7051 50 1 11.6464 3.9035 -0.7525 51 1 9.2138 4.2294 -5.6384 52 1 8.5031 5.3153 -3.1477 53 1 8.1310 3.8097 -2.2691 54 1 7.0611 5.6817 -1.1179 55 1 8.6063 6.5633 -1.0520 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162604513.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:39 Heat of formation + Delta-G solvation = -138.892759 kcal Electronic energy + Delta-G solvation = -32511.636639 eV Core-core repulsion = 28355.340060 eV Total energy + Delta-G solvation = -4156.296579 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41471 -40.15420 -38.83937 -38.26238 -36.10504 -35.79678 -34.52570 -32.68427 -31.63098 -30.25389 -28.94938 -27.61375 -27.19946 -26.87177 -25.48589 -25.39006 -23.89358 -22.63362 -22.46061 -20.80553 -19.82073 -18.74727 -17.91003 -17.40979 -17.13587 -17.03614 -16.90113 -16.81575 -16.63262 -16.18404 -15.96651 -15.75902 -15.34748 -15.31199 -15.12729 -14.86412 -14.57206 -14.34136 -14.10151 -13.92869 -13.64176 -13.49955 -13.26517 -13.05016 -12.94736 -12.75002 -12.62692 -12.56601 -12.52564 -12.28444 -12.26678 -12.19533 -11.97945 -11.89239 -11.83638 -11.82202 -11.42603 -11.20708 -11.09479 -10.70212 -10.54859 -10.52467 -10.45457 -9.85641 -8.63866 -7.85423 -5.30772 1.46041 1.46999 1.57336 1.74927 2.23896 2.51970 2.79948 3.00119 3.29266 3.68012 3.71992 3.75657 3.90711 3.96613 4.00761 4.04545 4.27911 4.30309 4.34077 4.45907 4.48988 4.50036 4.53068 4.57028 4.58113 4.59625 4.64865 4.69368 4.72672 4.76041 4.84486 4.86637 4.89202 4.91784 4.93863 4.97778 5.02381 5.04864 5.18273 5.25506 5.27141 5.29890 5.33134 5.38094 5.50301 5.65376 5.69758 5.80862 6.28176 6.28998 6.40564 6.80488 7.16910 7.44450 7.88806 8.40567 9.20636 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.003047 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.608577 B = 9187.159459 C =10653.308914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.065 3.935 4 C -0.096 4.096 5 C -0.093 4.093 6 H 0.130 0.870 7 C -0.145 4.145 8 C 0.502 3.498 9 O -0.600 6.600 10 N -0.697 5.697 11 C 0.140 3.860 12 C -0.051 4.051 13 C 0.082 3.918 14 O -0.407 6.407 15 C 0.029 3.971 16 C -0.108 4.108 17 C 0.137 3.863 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.184 3.816 28 C -0.109 4.109 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.418 0.582 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.006 0.994 50 H 0.056 0.944 51 H 0.248 0.752 52 H 0.047 0.953 53 H -0.012 1.012 54 H 0.067 0.933 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.688 4.971 16.557 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.011 4.011 4 C -0.135 4.135 5 C -0.114 4.114 6 H 0.148 0.852 7 C -0.203 4.203 8 C 0.289 3.711 9 O -0.481 6.481 10 N -0.353 5.353 11 C 0.015 3.985 12 C -0.052 4.052 13 C 0.005 3.995 14 O -0.327 6.327 15 C -0.067 4.067 16 C -0.148 4.148 17 C 0.012 3.988 18 N -0.332 5.332 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.249 4.249 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.058 3.942 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.024 0.976 50 H 0.075 0.925 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.006 0.994 54 H 0.086 0.914 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.360 4.000 16.316 23.449 hybrid contribution 0.619 0.470 -1.107 1.353 sum -15.741 4.470 15.209 22.340 Atomic orbital electron populations 1.22926 0.79314 1.03701 1.01108 1.87855 1.21701 1.29243 1.95674 1.22629 0.92134 0.84410 1.01937 1.21197 0.94126 0.95573 1.02572 1.21149 0.89527 0.98237 1.02455 0.85211 1.21873 1.03850 1.00186 0.94363 1.21267 0.90881 0.83730 0.75180 1.90662 1.76217 1.28813 1.52434 1.46175 1.06702 1.09900 1.72520 1.21199 0.80538 0.96754 0.99988 1.20691 0.95728 0.93399 0.95392 1.22545 0.80966 0.99355 0.96596 1.87498 1.20335 1.75772 1.49060 1.22907 0.99185 0.95117 0.89508 1.21843 0.92667 1.01582 0.98671 1.21081 0.97683 0.93780 0.86277 1.44299 1.03196 1.70974 1.14719 1.19524 0.94229 1.38765 0.86526 0.91439 1.25821 0.99320 1.00583 0.99127 1.70223 1.26781 1.44875 1.16257 0.85283 0.77859 0.78582 0.78837 1.21613 1.21947 1.19152 1.20412 0.83009 0.94876 0.95886 1.21854 0.99976 0.98601 0.94328 0.93028 0.88999 0.92669 0.91052 0.91430 0.93234 0.92210 0.91193 0.94155 0.88481 0.73894 0.94619 0.92396 0.91930 0.91775 0.88131 0.93584 0.93335 0.89491 0.90772 0.97612 0.92515 0.94334 0.93444 0.99433 0.91414 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.54 10.70 -148.98 -1.59 -11.13 16 3 C 0.06 1.20 5.69 71.98 0.41 1.60 16 4 C -0.10 -2.41 4.40 30.60 0.13 -2.27 16 5 C -0.09 -2.09 2.72 -11.54 -0.03 -2.12 16 6 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 7 C -0.15 -2.94 8.84 71.98 0.64 -2.31 16 8 C 0.50 16.39 7.15 87.66 0.63 17.02 16 9 O -0.60 -25.46 15.92 -3.01 -0.05 -25.51 16 10 N -0.70 -21.21 4.52 -463.06 -2.09 -23.30 16 11 C 0.14 4.79 3.80 86.38 0.33 5.12 16 12 C -0.05 -1.54 0.51 -52.15 -0.03 -1.57 16 13 C 0.08 1.78 4.80 71.98 0.35 2.13 16 14 O -0.41 -8.24 6.73 -148.98 -1.00 -9.24 16 15 C 0.03 0.37 11.01 113.37 1.25 1.62 16 16 C -0.11 -3.33 4.91 30.67 0.15 -3.18 16 17 C 0.14 5.71 6.05 86.36 0.52 6.23 16 18 N -0.61 -30.76 3.00 -699.94 -2.10 -32.86 16 19 C -0.26 -14.45 9.58 84.03 0.80 -13.64 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 21 C -0.05 -3.03 4.91 84.86 0.42 -2.62 16 22 N -0.94 -56.87 11.22 21.65 0.24 -56.62 16 23 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.18 8.93 4.81 86.22 0.41 9.34 16 28 C -0.11 -3.89 4.57 30.53 0.14 -3.75 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.03 6.56 -2.39 -0.02 1.01 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 36 H 0.07 1.35 7.56 -2.39 -0.02 1.33 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.34 6.56 -2.39 -0.02 1.33 16 39 H 0.42 10.96 4.12 -92.70 -0.38 10.58 16 40 H 0.04 1.58 4.99 -2.39 -0.01 1.56 16 41 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.01 0.27 6.69 -2.39 -0.02 0.25 16 50 H 0.06 2.29 7.93 -2.39 -0.02 2.28 16 51 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 52 H 0.05 2.64 6.08 -2.39 -0.01 2.62 16 53 H -0.01 -0.67 6.70 -2.39 -0.02 -0.69 16 54 H 0.07 2.22 6.49 -2.39 -0.02 2.21 16 55 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -76.36 415.90 3.28 -73.08 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.47 Total: 24.84 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 7.37 Total: 13.21 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.95 Total: -112.79 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.65 Total: -45.88 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -76.36 3.28 -73.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162604513.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.808 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds